Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F18 I0 R1
|
274 |
115.5 |
2655328 |
86.7% |
2302169 |
226.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
825,248 |
G→C |
20.2% |
G287G (GGC→GGG) |
ybhR ← |
putative ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 825,248 | 0 | G | C | 20.2%
| 111.6
/ 3.4
| 62 | G287G (GGC→GGG) | ybhR | putative ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (21/25); new base C (11/2); total (35/27) |
| Fisher's exact test for biased strand distribution p-value = 2.49e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
ACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAACC > NC_000913/825014‑825482
|
aCGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGGGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCACCTTCAAACCAAA‑AACGccca > 2:442325/1‑237 (MQ=255)
aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACGATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAGAAAAA‑CAACGCGATaaaag > 2:1170016/1‑236 (MQ=255)
aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGATCATAAAGAAAAA‑AACGCCGATAAACg > 2:932817/1‑238 (MQ=255)
aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑AACGcccgaaaaag > 2:616357/1‑230 (MQ=255)
aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGGTAATCCAAGTTCGG‑TTTTGCAGCCCTACCGGCCGGGTTTCCACCGGAGAA‑ACGTAACCGGAAAGGGGAAAGGCGGGCATCCTAAAGAAAAA‑AACGCCCAGaaaaa > 1:919682/1‑236 (MQ=255)
aCATCGGGTACCCCTCTGCCCCTGTCGTGGCCGTTACCACCAGTAGCGGCCACAACCTATCCCAAACAATACCCAGACTCGCATCCTTCAAATAAAT‑CTGTTTG‑GTAATGTCCGTAAAGG‑GGCAAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGAAAAA‑CACGCCGATAAACGcc < 2:586059/239‑1 (MQ=255)
cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCGTCATAAAGAAAAA‑AAACCCGATAAAAGCct > 2:260705/1‑236 (MQ=255)
cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAGACCAA‑AACACCCGTAAACGCccgct > 2:170512/1‑239 (MQ=255)
cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCCATCAACGCct > 2:148078/1‑236 (MQ=255)
cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGAATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGATCATAAAGAGCAA‑AACCCCGATAAAAGccc > 2:937052/1‑235 (MQ=255)
gcgTACGCCGCTGACCCTTCCTTGGCCTTAACCCCAAGTAGCGGCCAAAAACTATCCCACAAAATATCCAGCCTCGCTTCCTTCAAATAAAC‑CTGTTGG‑GTAATGTCCGTAAAGT‑GGCAAATAGGGTTAACCCACTTAAGG‑TTTGGCAGCCATACCGGCATGTTTTCCACCGGAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCctgctg < 2:620549/239‑1 (MQ=255)
cgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCGGTAAACGCCTGCcgt > 2:1166454/1‑239 (MQ=255)
cgTACGCCGCTGACCCTGTCGTGGCAGTTATCACCAGTAGCGGCCACAACCTATTCCACATACTATCCAGACTCGCATGCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGACTAGGGTTAATCCACGTCTGG‑TTTTCCAGCCATACCGGCTTGTTTTCCACAGGAGGC‑ACACAACCCGAAAGGTGAAGTGCGGGCCACCTACAGACACA‑CACAccctacaaacccccatcg > 1:988821/1‑223 (MQ=255)
gTACCCCGCTGCCCCTGTGGTGGCCGTTATCACGAGTAGGGGCAAAAAATTTTTCCCCACAATACCAAGACTCCCATCCTTAAAAAAAAT‑CTGTTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAACCCACGTAAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAAAA‑ACGTAACCGGAAGGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCtgtt < 2:389140/239‑1 (MQ=255)
cccTTTGGTGCCCGTTTCCCCCAGTAGCGCCCACAAACTTTCCCCAACAATACCAGGCCCCGAATCTTTAAAAAAATT‑CTGCTTG‑GTAAGGCACGAAAAGG‑GGCAAATGGGGTTAACCCAGGTCAGG‑TTTTGCAGCCATCCCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACaga < 1:1166454/239‑1 (MQ=255)
ccgtgccttttacccccATTACCGGCCACAAAATGTTCCACACAATACCCAGACCGGCACACTAAAAATAAAC‑CTGCTGG‑TTAATGTCCGAAAAGG‑GGCGAATAGGGTAAATCCCCGAAGGG‑TTTTGCAGCCATCCGGGCATGTTTTCCACCGGAGAA‑ACGTAACGGAAAGGGAGAAGGGGGGGCATCAAAAAAACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGtga‑t < 1:670728/224‑1 (MQ=255)
ggCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAAACAAA‑CACGCCGATAAACGCCCGCTGGTGGG‑GTGAACaagagggttgaa > 2:1247951/1‑228 (MQ=255)
gCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCTTAAAGACAAA‑CACGCCGCTAAAAGCCCGCCGTTGTG‑TTTAACAGAGGGA‑TGAAAt > 2:762030/1‑239 (MQ=255)
ccGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGA‑GGCGAATAGGGTTAATCCACTTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGTGGTCATCATAAAGACAAA‑CACCTCGATTACAGCCTCGCGTTGTGTTTGAAAagagagtaaaaac > 2:694743/1‑230 (MQ=255)
tttATCCCCATTGCCGCCCACAATTTGTTCCACACAATACCAAGACT‑GCATCCCTAAAAAAAATCCTGC‑TG‑GGAATGTTCCTAAAATGGGGGAATAGGGTAAACCCCCGTCAGT‑TTTGGAAGCCATACCGGCATTTTTCCCACGGGAAAA‑ACTTAACGGAAAAGGAGATTGGGGGGAAACAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCaa < 1:585749/238‑1 (MQ=255)
gCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGAGCCTAAAAACAAA‑AACCCCGCAAAAACCCCGCTGTTGTG‑TTGAACAACATGA‑TGAAAACAAAAAAACGAAAaccacc > 1:1014227/1‑239 (MQ=255)
gCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑AACGCCGATAAACGCCCGCTGTTGTG‑TTTAACAGCGGGG‑TGAAAACCACAGACCGAATCccac > 2:459423/1‑238 (MQ=255)
cacaAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATCGGGTTAATCCACGTCAGG‑TTTTGCAGCCAAACCGGCATGGTTTCCACCGGAGAC‑AACTAACCGGAAAGGAGAATAGCGGGGATCGCGAAAACAAA‑CAACCCGAAAAAAACCACCTGTTGTG‑TGGCAAAGAGAGA‑TGAAAACACAAGACCGAAACCCCCCAg > 1:833023/1‑239 (MQ=255)
acaATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGGATCCTAAAGACAAA‑CACACCGATAAACGCCTGCTGTTGGT‑TTGAAAAAATGGA‑TGAAATCAAAAAACCGAATCCCCCCAGCGATAAACCATaaa > 2:114765/1‑238 (MQ=255)
tatCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCGATAAACGCCGGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAAAAGACCGAATCCCACCACCGGTAAACCATAAATCAcc > 2:749689/1‑239 (MQ=255)
tatCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATAACGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGAATCTTAAAGACAAA‑ACAGCCCAGAAACGCCACCTTGTGGG‑TTGTACAGAGGGT‑TGAAAACAAACAACCGAACCCCACCACCCGTAAAcacaaaaaaaca > 1:984217/1‑228 (MQ=255)
cAGACTCGCATCCTTCAAATAAAT‑CTGTTTG‑GTAATGTCCGTAAAGG‑GGCAAATGGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCg < 2:856289/239‑1 (MQ=255)
gtccccatgcttaaataaat‑CTGTTTGTGTAGTGTCCGAAAGGT‑GGGGTAGGAGTTTAGTCCCGGTCAGT‑TTTGGCAGCCATCCCGGGA‑GTTTTCCCCCAGAAAACCCGTCACCGAAAAGGAGATTGGCGGGCATCAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTa < 1:1156007/226‑1 (MQ=255)
cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGCA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAAACAAA‑CAACACGCTAAAAGACAGCTGGTGTG‑TTTAACAAAAGGA‑GTAAAACCACAGAACGACTACCACCACAGAGAAAcacaaaataacaaacagaaaaaaa > 1:1016939/1‑216 (MQ=255)
cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGGACAA‑CAACCCGATAAACGCCCGCTGTTTGG‑TTGAACAGAGGGA‑ATAAATAAACAAACCCAAACCACCCCACGATAAAAAAAAAAACACCAACCTaaaaaaa > 1:1188282/1‑235 (MQ=255)
cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAAACGAATCCCACCACCGATAAACCATAAATCACCATCTTaaaagag > 2:812194/1‑235 (MQ=255)
cATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCCGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCCCCACCGAGAAACCAAAAATCACCCCCGTAAAgaaa > 2:367521/1‑236 (MQ=255)
tcttttttgttgtggcctaaaaGT‑GGCGAATAGGTTTAACCCACGGTAGT‑TTTTCACACCATCCCGGAATGTTTTCCACCGGAGAA‑CCGTAACCGGAAAGGAAAATGGCGGGAAACAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGAt < 1:932817/220‑1 (MQ=255)
cTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGGTAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAACCGAAACCCACCAGCGCTAAACCCTAAATAACCATCGTAAAGTAGAAAAGAGCCAGCGactcg > 2:520897/1‑234 (MQ=255)
cTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTTAACAGAGTGA‑TGAAATCAACAGACCCAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCgg > 2:126388/1‑239 (MQ=255)
tGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATTATAAAGACCAA‑CAAGCCGGTAAAACCACGCTGTTGGG‑GTTGACAAAGGGAGTGAAAT‑AACAAAACGAATTCCACCACCAGTAAACCAAAAAACACACCCGTCAACAAGAAAAACGCCGCCCAACCGGGGAAgggg > 1:754882/1‑239 (MQ=255)
atggggCGAA‑AGGGTTAAACCCCATTCGGTTTTTGCAGCCATACCGGCATTTTTTCCACCGGAAAA‑ACGTAACGGGAAAGGAGAATGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATa < 2:984217/235‑1 (MQ=255)
gcgatgaggttaaacccccgagaGG‑TTTGGCAGCAATGCGGGAATGTTTTCCACGGGAAAA‑ACGTAACGGGAAAGGAAAAGGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGcc < 2:746306/216‑1 (MQ=255)
gggTTATCCCACTTCAGA‑TTTGGAGCCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATAc < 2:20950/238‑1 (MQ=255)
gTTAACCCGCGTCAGG‑TTTTGCAGCCATCCCGGAATGTTTTCCACCGGAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGAATCAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCa < 2:1014227/238‑1 (MQ=255)
ctccgccgaaGG‑TTTTGCAGCCATCCCGGCATGTTTCCCACGGGAAAA‑TCGTAACCGGAAAGGAGAATGGCGGTCATCAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGc < 2:1230393/230‑1 (MQ=255)
acccccGTCAGG‑TTTGCCACCCATCCCGGCTTTTTTCCCCCGGGAAAA‑CCGTAACCGGAAAGGATAATGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGc < 2:1074978/234‑1 (MQ=255)
aTCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCCGCTGTTGTG‑GTGAACAGAGAGA‑TGAAATCAACAGACCGAATCCCACCAACGGTCAACCATAAATACCAATCGTAAAGAAGAACACCGACAAGGATCCGGGGAAGGGGAGTTggaacaacaaaaaacaaacacc > 1:407605/1‑218 (MQ=255)
ccggTCAGG‑TTTTGCAGCCATCCCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAg < 2:112457/236‑1 (MQ=255)
ggttaGG‑TTTGGCGGCCATCCCGGCATGTTTTCCACCGAAAAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATAAAAAAGCAAAC‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTAGATA‑CGCCCAGATACCAATCGCCAGca < 2:405762/235‑1 (MQ=255)
cGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGGTAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAGGGGGATTTGAAA‑GCCCCCGAAACCACTccccccca > 2:898513/1‑235 (MQ=255)
cGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAAAAGCGCCAACGAACCGGGGAAGGGGAATTGAAACCGCCCA‑AAACCAATCGCCAGcc > 2:434764/1‑238 (MQ=255)
cGTCAGG‑ATTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGACTGCTGTTGTG‑TTGAACAGAAGGA‑GGTAATCACAAGACCGAACCCCACCCGCGATTAACCCAAAATCACCACATAAAAGAAGAAAAGACACACCGATCCCGCCCAGGGGGCTTTATA‑AGCCCacaaaaaaaaacccaac > 1:20950/1‑222 (MQ=255)
cACGGGAAAA‑ACGAACCCGAAAAGGAGATTGGGGGGAAAAAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGGG‑TTGAACAGAGTGA‑TGAAAGCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACg < 1:434764/239‑1 (MQ=255)
cACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGGGGCCTGGAAGGGGGCGACAATTaaa > 2:1094314/1‑237 (MQ=255)
cccGAAAAGGAGAATGGCGGCAAACATAAAGACAAC‑CTCGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGc < 2:964620/238‑1 (MQ=255)
aCCGAAAAGGAGAATGGCGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGc < 2:527361/239‑1 (MQ=255)
cgaagaggggtaTGGGGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCGTCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCCCCAGCGATAAACCATAAATTCCCATCGTAAAGTAGAACAGCGCCAGCTATCCGGGGAAGGGGATTTGATT‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCg < 1:204276/228‑1 (MQ=255)
aagggAGAGTGGCGGTAATAATAAGGCACAA‑CACCCCGTAAAACGACCGCTGTGGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGGGATAAACCATAAATCACCAGCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGAt < 1:613985/235‑1 (MQ=255)
aGGAGAATGGGGGGCAT‑AAAAAAACAAACCACCCCGATAAACGCCTGTTGCTGTG‑TTGAACAGGGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGaa < 1:749689/239‑1 (MQ=255)
aGGAGAATGGCGGATATAAAAAAGAAAAA‑CACGCCGATAAACGCCTGGTGTTGTG‑TTGAACAGAGTGA‑TGAAAGCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCCCAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGaa < 2:545955/239‑1 (MQ=255)
catAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGTGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGGGGCTGCAATTAACGCCGGTACGGCTTTGCCGATGAAGGTCTGCCAGGGGGGGa > 1:1030022/1‑239 (MQ=255)
aaagcaaaccacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAgcg < 2:754882/230‑1 (MQ=255)
aa‑CACGCCGATAAACGCCTGCTGTTGGG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CCCCAAGATCCCAACCCCCAGCACCATGGGCGCCTGGAAGGGCGCGCGATTTACACCCGGAACGGGCTTCCCGTGGAATATCGGCAAGGGGGGGAGCGGGGaaaa > 1:1033805/1‑238 (MQ=255)
accacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAAc < 2:1279645/237‑1 (MQ=255)
accacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTACCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAAc < 2:749693/237‑1 (MQ=255)
a‑cacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCCCAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGGGAAAcc > 2:844732/1‑239 (MQ=255)
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ACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTG‑GTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAA‑ACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAACC > NC_000913/825014‑825482
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
