Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,976,685 T→C 15.9% E152G (GAG→GGG)  motA ← proton conductor component of flagella motor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,976,6850TC15.9% 224.0 / 3.8 101E152G (GAG→GGG) motAproton conductor component of flagella motor
Reads supporting (aligned to +/- strand):  ref base T (41/40);  new base C (6/13);  total (47/54)
Fisher's exact test for biased strand distribution p-value = 2.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

CTTTTCTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACA  >  NC_000913/1976448‑1976919
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                          
cTTTTCTGGCGAAAAACGGTCGCAAATGGGGAAAAAACACCGTAAGCCAATAAAAGGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCTCACCCAGCCCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATCCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGtctc                                                                                                                                                                                                                                           <  1:181826/239‑1 (MQ=255)
 ttttttGACTGAAAAAAGGCAATAAGGGGTAAAAACATACCTCAGCCCATAAAATGCGGATGACAGTCCCCACCAGCGCAGGTGCGATCAGCGCACCCAGCGCGGCGGCAGGCCGATCGGCTGAACCGACCCGGT‑GAACGACCACCATTACCGC‑CGCAACAATCCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCa                                                                                                                                                                                                                                          <  1:203876/239‑1 (MQ=255)
 ttttCTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGGGAGTCCCCGACCAGCGCCAGCCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCa                                                                                                                                                                                                                                          >  2:1248108/1‑239 (MQ=255)
  tttCTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTCCAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCCCTTTCGTGCGTCTCaa                                                                                                                                                                                                                                         >  2:1238378/1‑239 (MQ=255)
          gaaacccactCGCTAATCGGGAAATATATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCAGCGGCTGTGCGATAACGGCACCGAGCCCGGGGGCAGGACGATCGGCTGAACCGAACGCGT‑GAACGGCCCCCATAACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTca                                                                                                                                                                                                                                 <  1:418279/230‑1 (MQ=255)
          gTAAAACAGGCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTca                                                                                                                                                                                                                                 <  2:1123826/239‑1 (MQ=255)
             aaaCAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCCTTACACC‑CGCAACAATCCCAAACCCCGGAAGTGAGCCCCCCACCAACCCCAGACATTTCACCCGGCCCTCCACCTCCCTTTCGGGCGCCCCAACCCCTTccccc                                                                                                                                                                                                                              >  1:341495/1‑235 (MQ=255)
             aaaCAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCCGCGCCAGACTGTTCGCCGGGCATTCTGCCTCCCTTCCGTGCGTCTCAATCTTTtcctcc                                                                                                                                                                                                                              >  2:979333/1‑239 (MQ=255)
                  gTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAACCTCTTCATCCCTCag                                                                                                                                                                                                                         >  2:957502/1‑239 (MQ=255)
                   tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGCAGGGAGACCCCGACCCGGCCCACACTGTTCCCCGGTACTTTGGCCCAGCTTTCGGGCGGCCAAAACTCttaccccccaggc                                                                                                                                                                                                                        >  1:81355/1‑228 (MQ=255)
                   tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCaga                                                                                                                                                                                                                        >  2:526385/1‑239 (MQ=255)
                   tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGATCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGGGAGTCCCCGACCAGCGCCAGCCTGTTCGCCGGGACTTCTGACTCGCTTTCGTGCGTCCCAATCTCTTCATCCATCag                                                                                                                                                                                                                         >  2:419865/1‑238 (MQ=255)
                    cGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGGGCGCCTCAATCTCTTCTTCCCTCagg                                                                                                                                                                                                                        >  2:146441/1‑237 (MQ=255)
                        aaTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCCCTTCTTCCATCAGAGCTTc                                                                                                                                                                                                                   >  2:560451/1‑239 (MQ=255)
                           ggggAAATAAACCCGTAGGCCAAAAAAATGCCGAGGAAAGCCCCCACCACGGCCTGTGCGATAAGCGCACCCAGCCCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGGAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGAt                                                                                                                                                                                                                <  1:533098/239‑1 (MQ=255)
                            aaaaaaaaaacCCGGAAGCCAATAAAATGCCGAGGAAAGGCCCCCCCACCGAATGTGCGATAGGCGCCCCCAGCTCGGCGGCAGGACGATCGGCCGAACCTACCCGGT‑GAACGACCCCCATTCCAGC‑CGCAACAATACCAAGCGCCGGGAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGa                                                                                                                                                                                                                 <  1:752374/234‑1 (MQ=255)
                               aaataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTTCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACTCGT‑GAACGAACCCCAGTACAGC‑TGCAACAATACAAAACGCCGGAAGTGCGGCCCCACCCGGCGCCAGACTGCTCGCCGGGACTTCTACCTCGCTCTCGTTCGTATCAACCCCTTCATCCATCACGTCTTCCATTTca                                                                                                                                                                                                            >  1:812240/1‑238 (MQ=255)
                                aataaatCCGTAAGCCAAAAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa                                                                                                                                                                                                           <  2:741525/239‑1 (MQ=255)
                                aataaaccctgaacacAAAAAAATCCAGAGGAAAGTCCCCAACATCCCATGGGCGATAAGCCCCCCAAGCTCGGCGGCAGGACGATCGGCTAAACCAAACGCGT‑GAACGACCCCAATTACAGC‑CGCAACAATACCAAACGCCGCAAGTGAGTCCCCGACCAGCGCCAGACTTTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa                                                                                                                                                                                                           <  1:271572/224‑1 (MQ=255)
                                aataaacCCGTAACCCAATAAAATGCCGGGGAAAGGCCCCACCATCGCATTTGCGATAAGCCCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGCCCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa                                                                                                                                                                                                           <  1:1148102/239‑1 (MQ=255)
                                  taaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGGGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAg                                                                                                                                                                                                         <  2:508720/239‑1 (MQ=255)
                                  taaaccccaaacccAAAAAAAAGCCCGGGAAAGCCCCCCCCACCGGATGGGCGAAAAGCGCACCCAGCCCGGCGGCAGGACGACCGGCTGAACCTAAC‑CGTGGAACGCCCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAg                                                                                                                                                                                                         <  1:1280528/227‑1 (MQ=255)
                                          tAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGACGTGAGTCCCCGACCAGCGCCATACTGTTCGCCGGGACTTCTGCCTCGCTTTCCTGCGTCTCAATCTCTTCATCCATCCAAGCTTCGATTTCGaatgcgctct                                                                                                                                                                                                  >  2:752374/1‑230 (MQ=255)
                                          tAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATCTCTTCATCCATCCGAGCTTCGATTTCGCAGGGGTTCAt                                                                                                                                                                                                 >  2:1254859/1‑239 (MQ=255)
                                               ccaaaaaaccccGGGGAAACTCCCCGCCATCGCATGTGAGAAAAGCGACCCCATCCCGGGGGCAGGACGACCGTCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                            <  1:1248108/229‑1 (MQ=255)
                                               ccaTAAAATGCCGAGGAAAGTCCCCCCCATCGCTTCGGCGATAGGGGCACCCAACTCGGGTGCAGGGCCGTCGGCTAAACCTAACGCGT‑GGACGACCCCCATTACGGC‑CGCCACAATACCAAACGCCGGAGGTGAGTCCCCGACCCGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                            <  1:372700/237‑1 (MQ=255)
                                               cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                            <  2:981949/239‑1 (MQ=255)
                                               cAAAAAAAGCCCGAGAAAACGCCCCCCCCTCCGTTGTGCGAAAAGCCCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCCAACGCGT‑GAACCCCCCCCATTACCGC‑CGGAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                            <  1:1238378/239‑1 (MQ=255)
                                                  tAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCATGTGAcc                                                                                                                                                                                           >  2:878641/1‑237 (MQ=255)
                                                  tAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGGGCGTCTCAAtc                                                                                                                                                                                                                                       >  2:398960/1‑193 (MQ=255)
                                                    aaaGGCCGAGGAAAGGCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTg                                                                                                                                                                                       <  2:143654/239‑1 (MQ=255)
                                                         ccGAGGAAAGCCCCCCCCATCGCATGTGCAAAAAGCGCCCCCGGCTCGGGGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATTCCAAACGCCGGAAGTTAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAAt                                                                                                                                                                                  <  1:1045637/239‑1 (MQ=255)
                                                          cGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAAt                                                                                                                                                                                  <  2:486107/238‑1 (MQ=255)
                                                              gAAAGTCCCCACCATCGCATGGGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTCCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAgg                                                                                                                                                                              <  2:967029/238‑1 (MQ=255)
                                                                aaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCCCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGgcg                                                                                                                                                                            <  2:604581/238‑1 (MQ=255)
                                                                   tCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCATGTGACCGCTGATAATCAGGCGCAGa                                                                                                                                                                        >  2:244016/1‑239 (MQ=255)
                                                                              gcaagggcaaaaaGCGGACCCAGCACGGCGGCAGGACGACCGGCTAAACCTAACGCTT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAATCGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGAt                                                                                                                                                             <  2:7565/228‑1 (MQ=255)
                                                                                 tgagCGATAAGCGCACCCAGATCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTCCTGCCTCGCTTTCGTGCGTACCAATCTCTTCATCCATCAGAGCTTCAGTTTCGTGGGGGGTCATGTGACCGCCTCAAATCAGgccacagcacaccagagaaaa                                                                                                                                                          >  1:387595/4‑220 (MQ=255)
                                                                                  gtgCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACCGC‑CGCAACAATACCAAACGCCGGAAGTGCGTCCCCGACCAGCGCCAGCCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATCTCTCCATCCATCACGGCTTCGATTTCGACGGGGTTCGTTGGACCCCCGTTAATAACGCACAGAAACTCGACGaaaaaa                                                                                                                                                         >  1:687774/1‑239 (MQ=255)
                                                                                   tgCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCCGATAATCGACGATAAAAt                                                                                                                                                        >  2:113805/1‑239 (MQ=255)
                                                                                          aGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGGCTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCAAGTGACCCACGCTAATCAGGCGCAAGAAACCGACAAAAAAATAAAACaa                                                                                                                                                 >  1:347388/1‑238 (MQ=255)
                                                                                              cACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGAGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACCATAAAATCAAACATGAc                                                                                                                                              >  2:250623/1‑238 (MQ=255)
                                                                                                  catctcggctcagggccgctCGGCTAAACCTAACGCGT‑GAACGACCCCCATTA‑AGCGCGCAAATAGACCAATCCCCGGACGTCAGTCCCCGGCCAGCGCCAGTCTGTTCGCCGGGACTTCGGCCTCGCTTTCCTGCGCCTCAATCCCCTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTAt                                                                                                                                         <  1:272146/220‑1 (MQ=255)
                                                                                                  cacgccggcggCAGGCGCATCGGCTGACCCTACCGGGT‑TAACGCCCCCAATTACGGC‑CGCAAAAATACCCAACGCCGGAAGGGAGTCCCCGCCCAGGGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTAt                                                                                                                                         <  1:268233/234‑1 (MQ=255)
                                                                                                     cTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGGGCAGATAATCGACGATAAAATCAAGCATAACGCAATcc                                                                                                                                       >  2:961469/1‑238 (MQ=255)
                                                                                                       cggcggCAGGACGATCGGCTGAACCTAACGCGG‑TAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCcgcg                                                                                                                                    <  2:387595/239‑1 (MQ=255)
                                                                                                             caggccgtcgggCGGACCCCAAGGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGCCCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCTTCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGAt                                                                                                                               <  1:560451/228‑1 (MQ=255)
                                                                                                               ggACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGTAAAAATCAAGCATGACGCTATCCGCGAGGATGCg                                                                                                                            >  2:826006/1‑239 (MQ=255)
                                                                                                                                   cgcgT‑TACCGACCCCCATTACAGC‑CGAAACAATGCCAACCGCCGGAAGTGGGTCCCCGACCGGCGCCAGCCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAAGCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGAtct                                                                                                        <  1:113805/239‑1 (MQ=255)
                                                                                                                                            cgccccccATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCa                                                                                                <  2:1185141/236‑1 (MQ=255)
                                                                                                                                            cGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGGTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCAACAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCa                                                                                                <  2:423117/239‑1 (MQ=255)
                                                                                                                                               cccccATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACgg                                                                                             <  2:559010/239‑1 (MQ=255)
                                                                                                                                               cccccATTACAGC‑CGCAACAATACCAAACCCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATCTCTTCATCCATCAGAGCTTCGATTGCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACgg                                                                                             <  2:415460/239‑1 (MQ=255)
                                                                                                                                                  ccctttaccgcccccaaatgcccAAACGCCGGAGAGGAGGCCCCGCACAGCTCCATACTGTTCGCCGGTGCTTCTGCCTCGCTTTCGCGCGTCCTAATCTCGTCATCCATCAGACTTTAGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACgggg                                                                                           <  1:1216987/218‑1 (MQ=255)
                                                                                                                                                    aTTACAGC‑CCCAACAACACCAAACGCCGGAAGTGAGGCCCCGGCCAGCGCCAGACTGTTCGCCGGGACTTTTGCCTCGCTTTCGTGCGTCACAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGAtt                                                                                        <  2:812240/239‑1 (MQ=255)
                                                                                                                                                      tACCGC‑CGCAACAACACCAAACCCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTCCGCCGGGGATTCTGCCTCGCTTTCGTGCGTCTCAAACTCTTCATCCATCAGGGCTTCGATTTCGAAGGTGTTAATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGAtttt                                                                                      <  1:1136819/239‑1 (MQ=255)
                                                                                                                                                         aGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCTTGTGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTc                                                                                     >  2:848647/1‑237 (MQ=255)
                                                                                                                                                         aGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAAACCTCGCTCTCACGGGGATTTTaaa                                                                                   >  1:392708/1‑239 (MQ=255)
                                                                                                                                                          gC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAAATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGAGGCGGGGTGAGCTGGCGAAGATCTCGCTCCCAAGGGGATTTTAAat                                                                                  >  1:69816/1‑239 (MQ=255)
                                                                                                                                                              gCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAatat                                                                                >  2:1187349/1‑238 (MQ=255)
                                                                                                                                                               caacaaTACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCCGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGAAGCTGGCCAAGATGTCGCCCCCCCGGGGATTTTCAattta                                                                               >  1:269205/1‑235 (MQ=255)
                                                                                                                                                                   aaTACCAAACGCCGAACGTGCGCCCCCGCCCCTCGCAAGACTGTTCGCCGGGACTTCTGCCCTGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGGGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGtt                                                                          <  1:878641/239‑1 (MQ=255)
                                                                                                                                                                            cGCCGGAAGGGGGTCCCCGACCACCGCCCGCTTGTTCGTCGGGACTTCGGCCTCGCTTTCGTGCGTGCCAATCTCATCCACCATCAGAGGTTCGAATTCGAAGGTGTTCAGGTGACCGCTGATATGCAGGCGCAGATAATCGACGATAAAATGAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGaaa                                                                 <  1:979333/239‑1 (MQ=255)
                                                                                                                                                                               cGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATc                                                                                                                                                       <  2:143638/150‑1 (MQ=255)
                                                                                                                                                                               cGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATc                                                                                                                                                       >  1:143638/1‑150 (MQ=255)
                                                                                                                                                                               cGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCCCGAGGATGCGTGGGTAGCTGGCGAACAACTCGCTCGCACGGGGATTTTCAATATCCCGTGCCAACCaaaaaa                                                              >  1:743848/1‑237 (MQ=255)
                                                                                                                                                                                       aGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCGAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCGGGCGAAGATCTCGCTCTCACGGGGATTTTCCATATCACGTTCCAGCAAAAACACCCCCATc                                                      >  1:178064/1‑239 (MQ=255)
                                                                                                                                                                                         tCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCctct                                                     >  2:1018787/1‑238 (MQ=255)
                                                                                                                                                                                             cGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCcgc                                                >  2:952414/1‑239 (MQ=255)
                                                                                                                                                                                               aCCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAAAATCACGTTCCAGCGAAAACATCCCAAACTCCCGCGa                                              >  2:711437/1‑239 (MQ=255)
                                                                                                                                                                                                   gcgcCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAACCATCCCCATCTGCCGCGAttt                                           >  2:223329/1‑238 (MQ=255)
                                                                                                                                                                                                           cTGTTCGGCGGGACTTCTGCCTCGCTTTCGTGCGTCCAAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCa                                   <  2:913670/238‑1 (MQ=255)
                                                                                                                                                                                                           cTGTTCCCCGGGACTTTCGCCCCCCTTTCGTGCGTCCCAATCCCTTCATCCAACAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCa                                   <  2:269205/238‑1 (MQ=255)
                                                                                                                                                                                                              ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCATCGGAAACATCCCCATCTCCCGCGATTTCCGCATGAACCg                               >  2:97930/1‑239 (MQ=255)
                                                                                                                                                                                                              ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCg                               >  2:630511/1‑239 (MQ=255)
                                                                                                                                                                                                                     ggACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGGGCTTCGATTTCGAAGGTTTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGc                        <  2:392708/239‑1 (MQ=255)
                                                                                                                                                                                                                      gACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCa                       >  2:882640/1‑239 (MQ=255)
                                                                                                                                                                                                                        cTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCag                      >  2:32978/1‑238 (MQ=255)
                                                                                                                                                                                                                             gCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGGGCca                 >  2:929830/1‑238 (MQ=255)
                                                                                                                                                                                                                               tgcgttttagggCGTCCCAATCTATCCATCCATGAGAGTTGCAATGTCGAAGGTGGTGAGTGGACCGCAGAAAATCAGGGGCAGATAATCGATGATAAAAACAAGCCTGACGCTAGCAGCGAGGATGCGGGTGTAGCTGGGGAAGGTCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCAGCAACCGATAAAGCAGAGCcagca              <  1:438294/228‑1 (MQ=255)
                                                                                                                                                                                                                               ctgtcTTTTGTGCGTCCCAATCCCTGTATCCATCAGGGAGTCGATTTCGAAGGTGTTCAAGTGACCGCTGATAATCAGGCGGAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  1:1254859/235‑1 (MQ=255)
                                                                                                                                                                                                                               ctgtcTTTCGGGCGTCTCAATTTCTTCATCCATCAGAGCTTCGATTACGAAGGTGTTCATGTGACCTCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  2:74930/235‑1 (MQ=255)
                                                                                                                                                                                                                               ctctttttgcgtcGTCTCAACCCCTTCAGGCATCAGGGCTTCGTTTGCGAAGGGGTTCGTGTGACCGCTGATAAGCAGGCGCAGATAATCGACGATAAAATCAAGCATGGCGCTATCCGCGAGGATGCGTGGGTAGCGGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  1:781812/227‑1 (MQ=255)
                                                                                                                                                                                                                               ctctctttgtttcGTCCCAAACCCTTCATCCACCAACGCCTAGATTTACAAGGTGTTCATGGGACCGCTGATAATCAGGCGCAGATAAGCGGAGATAAAATCAAGCATGGCCCTATCCGCGAGGATGCTTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  1:468898/227‑1 (MQ=255)
                                                                                                                                                                                                                               caccttttGGTGGGTCTCAATCTCTTCATCGAACAGGCTTTGGATTTCAGAGGTGTGCATGTGACCGATGATAATCAGGCGCATATAATCGGCGATAAAATCAAGCATGACGCTTTCCGCGAGGATGCGGGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  1:711437/234‑1 (MQ=255)
                                                                                                                                                                                                                               cTCGTTTTTGGGCGTCCAAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  2:958410/239‑1 (MQ=255)
                                                                                                                                                                                                                               cTCGGTTTCGTGCGTCCCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGGGACCGCGGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  2:743848/239‑1 (MQ=255)
                                                                                                                                                                                                                               cTCGGTTTCGTGCGTCCAAATCTCTTCACCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  1:995879/239‑1 (MQ=255)
                                                                                                                                                                                                                               cTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  2:1024243/239‑1 (MQ=255)
                                                                                                                                                                                                                               cTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  2:454207/239‑1 (MQ=255)
                                                                                                                                                                                                                                tCGCTTTGCGGCGTCCCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGA‑TTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGa            <  2:466735/239‑1 (MQ=255)
                                                                                                                                                                                                                                tCGCTTTCGGGCGTCTCAATCCCTTCATCCAACAGAGGTTCGATTTCGAAGGTGTTCATGTGACCGCTGAGAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca              <  2:341495/238‑1 (MQ=255)
                                                                                                                                                                                                                                 cGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagccg             >  2:48261/1‑236 (MQ=255)
                                                                                                                                                                                                                                 cGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCACCTGCCGCGATTTCGCCTTCAACCGATAAAGcctgtcccttata            >  2:256744/1‑227 (MQ=255)
                                                                                                                                                                                                                                   cTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCCCGTTCCAGCGAAAACCTCCCCTCCCCCCGGGATTTCGCCCTCAACCgcaaaaaaaaaaccaacaaaac          >  1:313564/1‑218 (MQ=255)
                                                                                                                                                                                                                                   cTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGCCGAACATCTCGCTCTCACGGGGCTTTTCAATATCACCGTCCACCAAAAACATCCCCACCTCCCCCGATTTCCCACTCCACCGCAAAAGCacaacaaacacaac          >  1:426728/1‑226 (MQ=255)
                                                                                                                                                                                                                                      tccggCGTCTCACTTTCTTCATCCACCAGGGCTTCGATTTCGAAGGTGTTCATTGGACCGCTGATAATCAGGGCCAGGTAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCat       <  1:961469/235‑1 (MQ=255)
                                                                                                                                                                                                                                           cGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCAaataaa  >  2:789807/1‑237 (MQ=255)
                                                                                                                                                                                                                                           cGTCTCAATCCCTTCAGCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACa  <  2:408223/239‑1 (MQ=255)
                                                                                                                                                                                                                                           cGTCCCAATCTCTGCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACa  <  2:347388/239‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                          
CTTTTCTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGT‑GAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACA  >  NC_000913/1976448‑1976919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A