Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,077,484 T→C 11.0% intergenic (+4/‑85) cbeA → / → cbtA CP4‑44 prophage, cytoskeleton bundling‑enhancing factor A, CbtA antitoxin/CP4‑44 prophage, toxin of the YeeV‑YeeU toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,077,4840TC11.0% 256.3 / 3.0 103intergenic (+4/‑85)cbeA/cbtACP4‑44 prophage, cytoskeleton bundling‑enhancing factor A, CbtA antitoxin/CP4‑44 prophage, toxin of the YeeV‑YeeU toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base T (49/38);  new base C (2/11);  total (53/50)
Fisher's exact test for biased strand distribution p-value = 7.08e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 105 total aligned reads displayed.

GACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCA  >  NC_000913/2077247‑2077720
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
gccgcggcCGGTACCAGGGGCCTGTTCAGGGAGGCAGGTGCGTACCCCCTGGCCCGGGCCTTTCCGCTGGTGATGAAACAACCGGAACTCATGCTCCCGAGCGGGGAAC‑TGAACCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACtctc                                                                                                                                                                                                                                              <  1:58009/233‑1 (MQ=255)
   cgcgCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTTTCCaa                                                                                                                                                                                                                                           >  2:223092/1‑238 (MQ=255)
     ggcCGGTACCAGAGGACTGGTCAGCGATGCAAATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGaa                                                                                                                                                                                                                                         <  2:466926/238‑1 (MQ=255)
          ttttCAGGGCCCTTTTCAGGGAGCCAGATGCGTCCCCCCTGGACCAGGCTTTTCGGCTGCTGAGGAAACAACGGGAACCCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGcc                                                                                                                                                                                                                                    <  1:1252870/236‑1 (MQ=255)
           taaaagagaaaggTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGGGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGcc                                                                                                                                                                                                                                    <  2:952824/226‑1 (MQ=255)
            acccgggtcccttgtagagATGCATGTGCGTCCCACCGGGACCAGGCCTTCCCGCTGCTGATAAAACAACTGGACCTCCTGCTCCCCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCtt                                                                                                                                                                                                                                  <  1:190956/221‑1 (MQ=255)
                   gCCTGTTCAGGGATGCAGATGCGTACCCCCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATa                                                                                                                                                                                                                                       <  2:1203191/227‑1 (MQ=255)
                   gCCTGTTCAGGCATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTa                                                                                                                                                                                                                            <  2:362271/238‑1 (MQ=255)
                    ccTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTTCAGCATAACCTTCTGCTAc                                                                                                                                                                                                                           >  2:237405/1‑238 (MQ=255)
                     cTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACg                                                                                                                                                                                                                          >  2:1293789/1‑238 (MQ=255)
                      ttttccgtaatgcaattccGTCCCCCCTGGCCCGGGCTTTCCCCCTCCCGAGGAAACACCTGGACATCATGCTCACCAGCGGTGAAC‑GGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGc                                                                                                                                                                                                                        <  1:90766/221‑1 (MQ=255)
                        ttCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTTAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCGCCAGAATATCATTTTGCTCCgc                                                                                                                                                                                                                         >  2:83525/1‑235 (MQ=255)
                        ttCAGCGATGAATGTGCGTCCCACCTGTCACAGGCCTTTCAGCTGGAGAAGAAACACCTAGAACTCATGCTCACCGGGGGGGAAC‑GGAACCCCCGCCATCAGCATACCGTCACGCTGTATGAAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCt                                                                                                                                                                                                                      <  1:366451/239‑1 (MQ=255)
                         ccAGCGATGAAGATGCGTCCCACCGGGACCAGGCCTTGCCGCTGCTGATGAAACAACGGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGAACTGCAAAGCCGATGCCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCt                                                                                                                                                                                                                      <  2:758207/237‑1 (MQ=255)
                             cGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGCAACCCTCAGCCGTTGTTATTCCGTTTT‑TCTGGCTGTTTATCCGACCCCCGAAATGAAAAATTAACACTCCCGAATAGCCTTCTTCTACTGctcctaat                                                                                                                                                                                                                 >  1:1203191/1‑232 (MQ=255)
                             cGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGgtgt                                                                                                                                                                                                                 >  2:805094/1‑239 (MQ=255)
                             cGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTAACCAGAGGTGAAC‑TAAATCCCCGCCATAAGCATACCGGCACGCTGAATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCCATTGGGAATACGTTTA‑TCTGGCTGGTGACTCGACGCCCGCAATAAAAAATTAACTCTCCAGAAAGGCACTCTGCTACGGCCCGgtgt                                                                                                                                                                                                                 >  1:176798/1‑239 (MQ=255)
                                tGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCGGGGGtttt                                                                                                                                                                                                              >  1:686039/1‑239 (MQ=255)
                                  cAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCCGCAGTTGTGATTACGTTTA‑TCTGGCGGTTTTTCCGACGCCCGCATTGAAAAATTAACCCCCCCAAAAACCCTTCTTCTatgcctttccctttaa                                                                                                                                                                                                             >  1:952824/1‑223 (MQ=255)
                                  cAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAACTTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGGGTTTTc                                                                                                                                                                                                             >  2:950900/1‑238 (MQ=255)
                                      tGCGTACCACCTGGCCCCGGCTTTCCCGCTGTGGATAAAACAACTGGAACTCATGCTCACCGGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTcacca                                                                                                                                                                                                         <  2:415794/238‑1 (MQ=255)
                                          tACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGGTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACTGCCTGGTGTTTTAACCACGcc                                                                                                                                                                                                     >  2:365993/1‑238 (MQ=255)
                                                       aGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCCGAAAAGCCTTTTTCCACGCCCTGGTGGTTTCCCCCACCCCCTTTTCCCttttt                                                                                                                                                                                       >  1:1136710/1‑239 (MQ=255)
                                                        ggCTTTTTCGCTGGTGAGGAAAATACGGTAACCCATGCCCACCAGCGGTAAAC‑TAAACCCCCGCAATCCGGTAACCGTCCGGCTGGATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGCCGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTta                                                                                                                                                                                      <  1:171540/239‑1 (MQ=255)
                                                          cttttCCGCTGCTGATGAAACAACTGGAACCCAGGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTtat                                                                                                                                                                                     <  2:505910/236‑1 (MQ=255)
                                                          ccTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGACATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGGGTTTTCACCACGCCACTTTTCCATTTTtata                                                                                                                                                                                    >  2:575152/1‑239 (MQ=255)
                                                              tccccggcgcagcaaaCACCTGGACTCCTTGCCCCCCAGCGGAGAAC‑TGACCCCCCGGACACAGCAACCCGTCACCGTTTATGCAAAGGGGCTTCTCTGCAAAGCCGATACCCCCAGAAGTTGGTATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCCCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTg                                                                                                                                                                                <  1:301457/226‑1 (MQ=255)
                                                              tCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGGGTTTTCACCACGCCACTTTTCCATTTTTATATCTg                                                                                                                                                                                >  2:617428/1‑239 (MQ=255)
                                                              tCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCATCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTACCTCTCCCAAATAGCCTTCTGCGCAGGCCTGGTGGTTTCACCCCACCACTTTTCCATTTTTATATCta                                                                                                                                                                                >  1:493618/1‑238 (MQ=255)
                                                                  ctgctgATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTTTGCTACGGCCTGGTGTTTTCACCACGCCCCTTTTCCATTTTtttacttccaaa                                                                                                                                                                            >  1:1273800/1‑231 (MQ=255)
                                                                   tgctgATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGACAAATTAACTCTCCAGAATAGCCTTCTGCTCCAGCCTGGTGTTTTCACCACCCCCCTTTTCCATTTTTATATCTGCata                                                                                                                                                                            >  2:1231996/1‑238 (MQ=255)
                                                                   tgctgATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCata                                                                                                                                                                            >  2:1325014/1‑238 (MQ=255)
                                                                     ctgATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGGGTTTTCACCACGCCACTTTTCAATTTTTATATCTGCATATCa                                                                                                                                                                         >  2:660665/1‑239 (MQ=255)
                                                                               ccgtgaaaCTCGTGCCCCCCAG‑GGTGAACATGAACCCCCCCAATCGGCTTCCCGTCACGCTTTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGGTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCtt                                                                                                                                                               <  1:237405/233‑1 (MQ=255)
                                                                                  tGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCtt                                                                                                                                                                                                                                  <  2:709057/169‑1 (MQ=255)
                                                                                  tGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCACCGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCtt                                                                                                                                                                                                                                  >  1:709057/1‑169 (MQ=255)
                                                                                  tGGAACTCATGCTCACCAGCGGGGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAg                                                                                                                                                            <  2:1071613/239‑1 (MQ=255)
                                                                                      acgcgtgctacccgggtgTGAAC‑GGAATCCCCGGCATCAGCAAACCGTCACGCTGTAGGCAAAAGGGCGGACATGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGCCGCCCGAAATGAAAAATTAACTCTCAAGAATAGCCTTGTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATg                                                                                                                                                        <  2:1061456/222‑1 (MQ=255)
                                                                                      acccATGCCCACCAGGGGGGAAC‑TGAATCCCCGCCAACAGCATTCCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTGTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATg                                                                                                                                                        <  2:1136710/236‑1 (MQ=255)
                                                                                         cATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCATTCTGCTACGGCCTGGTGTTTTCACCGCGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑aaa                                                                                                                                                    >  2:595630/1‑239 (MQ=255)
                                                                                           tGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGAGTTTTCACCACGCCACTTTTCCATTTTTTTATCTGCAAATCCGGAAAATCTTCAGTATT‑AAAAc                                                                                                                                                  >  2:868745/1‑239 (MQ=255)
                                                                                            gCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGCGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACa                                                                                                                                                 >  2:280977/1‑239 (MQ=255)
                                                                                             ccccaccctgggttaatggAACCCCCCCCATAAGCATCCCGTCACGTTGTATGCAAAAGGGCTGCCCTGCAAAGCCGATCCCCATAGTAGTTGTGATTACGTTTA‑GCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACa                                                                                                                                                 <  1:223092/221‑1 (MQ=255)
                                                                                                cccggctgTGCAC‑TGAACCCCCCCCAACAGCAACCCGTCCGGCTTGTGGCAAAAGGGCTGCCCTGCAAAGCCGATTCCCTAAGCAGTTGTGATTTCGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTAc                                                                                                                                             <  1:1291951/232‑1 (MQ=255)
                                                                                                cccggCGGTGAAC‑TGAATCCCCGCCATCGGCATACCGTCACGTTGTATGCAAAAGGTCTGACCGTCAAATCCGATGCCCGCAGCAGTTGTGATTGCGTTTA‑CCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTAc                                                                                                                                             <  1:987924/235‑1 (MQ=255)
                                                                                                     cGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGGGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGCCCTGGGGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAAAATAACCTGTa                                                                                                                                        >  2:356882/1‑239 (MQ=255)
                                                                                                               gaatcaacgcagacAGCATACCGTTAGGCTGGATGAAAAAGGGCGGAGGTGCAAAGCAGATGCCCTCAGCAGTTGGGATTACGTTTA‑TCTGGATGGTTATCCGACGCCCGAAAGGAAAAATTAACTTTCCAGAATAGACTTGTGCTACGGCCTGGTGTTTTAACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACAATACCTGTATTACCCggg                                                                                                                               <  2:1247298/226‑1 (MQ=255)
                                                                                                                aaTCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCCAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTACCCACGCCCCTTTTCCCTTTTTCTAACTGCCTTTCAGGGAAAAACTCAGGATT‑AAAAAATTACCCATTTTACCCGGGc                                                                                                                              >  1:1172469/1‑239 (MQ=255)
                                                                                                                aaTCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAACCTTCTGCTACGGCCTGGGGTTTTCACCCCGCCACTTTTCCATTTTTTATTTTGCCAATCCGGAAAAACTCTAGTATGCAAAACTTTACCT‑AATTAccc                                                                                                                                  >  2:1291951/1‑235 (MQ=255)
                                                                                                                       gCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGAATG‑AAAAAATTACCTTTATTACCCGGCCAgggggc                                                                                                                       >  1:641631/1‑239 (MQ=255)
                                                                                                                       gCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCACTTTTTATATCTGAATATCCGGAAAATCTTCAGAATC‑ACAACATTAACTGGTATACCCGGGCAgagagc                                                                                                                       >  1:320629/1‑234 (MQ=255)
                                                                                                                               cATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTtct                                                                                                                >  2:166845/1‑238 (MQ=255)
                                                                                                                                aTACCGTCACGCTGTATGCAAAAGGGCTGACTTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTACCTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGtt                                                                                                                  <  2:414844/235‑1 (MQ=255)
                                                                                                                                  aCCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGc                                                                                                             >  2:439563/1‑238 (MQ=255)
                                                                                                                                      tCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGt                                                                                                         >  1:306640/1‑238 (MQ=255)
                                                                                                                                            tttttgtaaaaGGGTTTGCTTGCAAAGCCGATGCCCTCGGCAGTTGTTATTGCGTTTA‑TCCTGTTGTTTTTCCGACGCCCGGAATGAAAAATTAACTCCCCATAATAGCCTTCTGCTACGGCCTGGGGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGt                                                                                                  <  1:64981/232‑1 (MQ=255)
                                                                                                                                                tGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑GAAAc                                                                                                                                                  >  2:459973/1‑187 (MQ=255)
                                                                                                                                                tGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑GAAAc                                                                                                                                                  <  1:459973/187‑1 (MQ=255)
                                                                                                                                                   aaaagggtgtgccTGCACAGCCGAGACCCTCCGCAGTTTGGATTGCGTTTG‑TATGGCTGTTGATGCGACGCCCTAAATTAAAAATTAACCTGCCAGAATAGCCTTCTGCTACGGCCTTGTTGTTTCACGACGGCTCTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGCATTTCCCGGGCAGGCGGCCAGTTCTCGCCCTTCCCCTTTTGTAAt                                                                                            <  1:83525/227‑1 (MQ=255)
                                                                                                                                                   aaaaGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAAt                                                                                            <  2:1273800/238‑1 (MQ=255)
                                                                                                                                                   aaaaGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCCCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAAt                                                                                            <  2:686039/238‑1 (MQ=255)
                                                                                                                                                     aaGGGCTGTCCTGCATAGCCGATACCCTCCGCAGTTGTGATTACGTTTA‑TCTGGCTGATTATCCGACGCCCGAAATGAAAAATTAACTCCCGAGAATAGCCTTCTCCTACGGCCTGGTGTTTTCACCACGCCACCTTTCCATTTTTATATCTCCATATTCGGAAAATCTTCCGTATG‑AAACACTTACTAGTCTTACCCGTGCAAGCGGCCATTTCTCGCCACGCACCCGTTGaaaccag                                                                                         >  1:315215/1‑235 (MQ=255)
                                                                                                                                                        ggCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTTTG‑AAACCATTACCTGTTTTACCCGGCCGGGCGGGCAGTTTTCGCCCGGCACCGTTTGAAACTTGGcg                                                                                      >  1:1146545/1‑238 (MQ=255)
                                                                                                                                                        ggCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGGATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCCCCTGTTGAAATATGGCa                                                                                      >  1:765438/1‑239 (MQ=255)
                                                                                                                                                        ggCTGACCTGCAAAGCCGAGACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGGGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGAATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCa                                                                                      >  2:594358/1‑239 (MQ=255)
                                                                                                                                                        ggCTGAACTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCATGATGGTTTCACCACACCACTTTTCCATTTTTATAGATCAATACCAGGAAAAACTTAAGTATA‑AACACATAGCCTTTACTACCCGGGCAGCCGACAAAGTCTCGCCCACCTCACGTTGACATATGTCa                                                                                      >  1:74567/1‑239 (MQ=255)
                                                                                                                                                          cTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGACATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGa                                                                                    >  1:1091652/1‑239 (MQ=255)
                                                                                                                                                           tGACCTGCAAAGCCGATACCCTAGGCAGTTTTAATTCAGGTTC‑TCTGGCGTTTTTCCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGa                                                                                    <  1:805094/238‑1 (MQ=255)
                                                                                                                                                            gACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCCCCCCCCTTTGAAATCTGGCAAAt                                                                                   >  1:1292697/1‑238 (MQ=255)
                                                                                                                                                             aCCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGTGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAgtt                                                                                   >  2:70426/1‑235 (MQ=255)
                                                                                                                                                             aCCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTTTCGCCCCTCTCCCGTTTAAAACTGGCAGaa                                                                                   >  1:1150979/1‑236 (MQ=255)
                                                                                                                                                               cgtccaaGCCGATTCCCTCAGACGTTGGTATTACGTTTA‑GCTGGCTGTTTACCCGACGACCGAAATTAAAAATTAACTCCCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGAAGATActg                                                                               <  1:890320/234‑1 (MQ=255)
                                                                                                                                                                 gCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTAGCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATActgct                                                                             <  2:328303/239‑1 (MQ=255)
                                                                                                                                                                       ccGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCCCTTTTCCATTTTTATATCTGCATATCCGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCTGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTAGCAAATACTGTCGTCCCg                                                                       >  1:331516/1‑239 (MQ=255)
                                                                                                                                                                         gATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTccc                                                                        >  2:246342/1‑236 (MQ=255)
                                                                                                                                                                                 cagcagTTTTGATTACGTTTA‑TTGGGTTGTTAACCCGACCCCCGAAATGAAAAATTAACCCTCCAGAAGAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGAc                                                             <  2:97349/239‑1 (MQ=255)
                                                                                                                                                                                 acggtgTTGTGATTGTGTTTA‑TCTGGCTTGTTATCCGGACCCCTAATTGAAAAATTAACGCCCCATAATAGCCTTCAGCTACGGCCTGGTGTTTTCACCCCGCCACTTTTCCATTTTGATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGAc                                                             <  1:762885/234‑1 (MQ=255)
                                                                                                                                                                                     agTTGTTATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAg                                                          <  2:554566/238‑1 (MQ=255)
                                                                                                                                                                                     agTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAg                                                          <  2:1150979/238‑1 (MQ=255)
                                                                                                                                                                                       ttGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCCCTTTTCCATTTTTATATCTGCATATCAGGATAATCTTCAGTTTG‑AAAAAATTCCCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTTAAATCTGCCAGTAACTGCTGTCCCACCTGCGGGCCCacacc                                                       >  1:644356/1‑235 (MQ=255)
                                                                                                                                                                                       ttGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGAATTACCCAGGCAGTCGGCCAGTTCTCGCCCGTCCCCTGTTGAAATATGACAGATACTGCTTACCCGCCTGCTGAACCAGCAc                                                       >  1:322374/1‑239 (MQ=255)
                                                                                                                                                                                        tgtgATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGACAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCACCACt                                                      >  1:994004/1‑239 (MQ=255)
                                                                                                                                                                                        tgtgATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑CAAACATTACCTGTATTACCCGGGCAGGCGGCAAGTTCTCGCGCGTCTCCTTTTGAAATCTGGCAGATACTCCTGTCCCGACTGCTGGACCGGCACt                                                      >  1:97349/1‑239 (MQ=255)
                                                                                                                                                                                         tttattctttttt‑TCTGGCTGTTTTTCGGACGCCCGAAATGAAAAATTAACTCCCCAGAATTGCCTTTTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAACTCTTCAGTATG‑AAAACATTCCCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTa                                                     <  1:280977/230‑1 (MQ=255)
                                                                                                                                                                                         gtgATTTCGTTTACTCT‑GCTTGTTACCCGGCCGCCCAAATGAAAAATTAACTCCCCAAAATAACCTTCTGCTACGGCCTGGTTTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTa                                                     <  2:787864/239‑1 (MQ=255)
                                                                                                                                                                                         gtgATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCt                                                                                                                                                                                                                      <  1:1157309/79‑1 (MQ=255)
                                                                                                                                                                                         gtgATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCt                                                                                                                                                                                                                      >  2:1157309/1‑79 (MQ=255)
                                                                                                                                                                                         gtgATTACGTTGA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCCCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTa                                                     <  2:792037/239‑1 (MQ=255)
                                                                                                                                                                                                             gttttaccccgcccccGAAATGAAAAATTAACCGCCCAAGATAACCTTCTGCTACGGCGTGGAGTTTTCTACACTCCACTTTTCCATTTTTAATTCTGCATATCAGTAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGATGAAATCTGGCAGATACTGCTGTCCCGACTGGTGGACCAGCACTATGGCCTCGCACTGAATgtc                                  <  1:1231996/226‑3 (MQ=255)
                                                                                                                                                                                                                ttATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTcc                                                                                                                                                                                             >  1:1146633/1‑82 (MQ=255)
                                                                                                                                                                                                                ttATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTcc                                                                                                                                                                                             <  2:1146633/82‑1 (MQ=255)
                                                                                                                                                                                                                        cccccGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGc                       <  1:1293789/237‑1 (MQ=255)
                                                                                                                                                                                                                         gCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCCCACTGAATGACACACCTTTTGcc                      >  2:463241/1‑239 (MQ=255)
                                                                                                                                                                                                                               aaTGAAAAATTAACCCCCCATAATAGCCTTCTGGTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTGCCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAATTCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGa                 <  2:176798/238‑1 (MQ=255)
                                                                                                                                                                                                                                 ttaaaaaTTTACTCTCCAAAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACg              <  1:1325014/237‑1 (MQ=255)
                                                                                                                                                                                                                                 tGAAAAATTAACTCTCCAGAATAGCCTTCTGCTCCGGCCTGGGTTTTTCCCCACGCCACTTTTCCATTTGTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACg              <  1:480246/239‑1 (MQ=255)
                                                                                                                                                                                                                                 tGAAAAATTAACTCCCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACg              <  2:1121559/239‑1 (MQ=255)
                                                                                                                                                                                                                                      aaTTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGa         <  2:298782/239‑1 (MQ=255)
                                                                                                                                                                                                                                        ttAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAtt       <  2:644356/239‑1 (MQ=255)
                                                                                                                                                                                                                                             tctcCAGAATAGCCTTCTGCGACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGagca  <  2:468754/239‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
GACCGCGCCGGTATCAGAGGCCTGTTCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGTGAAC‑TGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTGTGATTACGTTTA‑TCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAACTCTCCAGAATAGCCTTCTGCTACGGCCTGGTGTTTTCACCACGCCACTTTTCCATTTTTATATCTGCATATCAGGAAAATCTTCAGTATG‑AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCA  >  NC_000913/2077247‑2077720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A