Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,219,304 A→C 15.5% V59G (GTG→GGG)  osmF ← putative ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,219,3040AC15.5% 245.1 / 2.8 102V59G (GTG→GGG) osmFputative ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base A (38/43);  new base C (8/11);  total (46/56)
Fisher's exact test for biased strand distribution p-value = 8.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

CATCCTGACGCACGGCGATAGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCAT  >  NC_000913/2219068‑2219532
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                      
cttCCTGACGCCTGGCGTTTGTCCGGTTTTTATTTTCAGGCGCTGGCGTCAGCCAGATTAACTTGTTGGGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGGAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACt                                                                                                                                                                                                                                      <  1:168561/237‑1 (MQ=255)
       aCGCACGGCGATAGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGCT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCCCAGGAGTCGTTCCGAGTTG‑CCCTTTAtta                                                                                                                                                                                                                                >  2:165857/1‑237 (MQ=255)
        tcccccggcttttgtccggTTTTTTTTGGGGGGGCGGGCGTCAGCCAGATTAACGTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCAc                                                                                                                                                                                                                              <  1:728930/222‑1 (MQ=255)
         acACGGCGATGGTCCTGGTTTTTTTTGCAGGTGGCGGCGCTCGCCTGAATATCTTTGTGTGCCCCGAAATGTACTTGTTTCCTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCAACGTTTTCATCTTTAAATAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCCC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCAcc                                                                                                                                                                                                                             <  1:896565/238‑1 (MQ=255)
               cGATAGTCCAGGTGGTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGGGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCgg                                                                                                                                                                                                                        <  2:179437/238‑1 (MQ=255)
                   aggcccggttgtttttGCAGGCGCGGGCCGCCGGCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGc                                                                                                                                                                                                                   <  2:635757/226‑1 (MQ=255)
                         ggggtTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCCCGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTTAC‑AGGCAGGAATTCCCCC‑AGGCCCGCAAGGAGTCGTTCCGACTTT‑CACTTTTTTCAACCTCGGTACGCCCTgac                                                                                                                                                                                                             >  1:1137560/4‑237 (MQ=255)
                         ggTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGCCGTTCCGAGTTG‑CACTTTATTCACCGTCGGAACCCCGTg                                                                                                                                                                                                               >  2:498500/1‑237 (MQ=255)
                           tgtTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTgg                                                                                                                                                                                                              <  2:1000966/236‑1 (MQ=255)
                               aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGACGTAATCGCCCC‑GCGCACCACAGGAGCCGTTCGGCGTTG‑CACTTTATTCACCGTCGGtgaccgcgggctttcca                                                                                                                                                                                                       >  2:1276603/1‑223 (MQ=255)
                               aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGCCGGAACCCCGTGGCTTTcc                                                                                                                                                                                                        >  2:704809/1‑238 (MQ=255)
                               aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATAGCCCC‑GCGCACCACAGGGGTCTTTCCGGGTTC‑GCCTTTATTTACCCCCGGGACGCCCGGGGTTTccc                                                                                                                                                                                                       >  1:1139823/1‑238 (MQ=255)
                               aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGCATATTCCGGTT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTAGTTCCGAGTTG‑CACTTTATTCACCCCCGGTACCCCCGGGCTTTCCa                                                                                                                                                                                                       >  1:1051003/1‑239 (MQ=255)
                                 ttGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGc                                                                                                                                                                                                     <  2:320594/239‑1 (MQ=255)
                                  ttctgtgtctgtgctccgCCAGATTAAGTTGTTGTGTCCCGGATCGGGCTTTTTGCCTTTCTCGTAACCTTCCTGCGCGATTTGCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCa                                                                                                                                                                                                    <  1:983242/222‑1 (MQ=255)
                                   gCAGGCGGGGGCGTCAGCCAGATTAACTTGGTGTTCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCAc                                                                                                                                                                                                   <  2:436364/239‑1 (MQ=255)
                                     aGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGGATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGCGTCGTTCCGAGTTG‑CACTTTATTAACCGTCGGTACGCCGTGGCTTTCCAGCAcc                                                                                                                                                                                                  >  2:1265732/1‑238 (MQ=255)
                                       gcgcGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCCCCGGAGTCGTTCAGAGTTG‑CACTTTATTAACCGTCGGGACGCCGTGGCTTTCCAGCACCTGc                                                                                                                                                                                               >  2:789038/1‑239 (MQ=255)
                                          cgGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGATGCGCGTTTTTCCACGCTGCCTCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACGCAAGGAAGCGTTCCGGGTTT‑CCCTTTATTAACCGCAGGCGCCCACGGGGTTTCCAGCACCTGCcaa                                                                                                                                                                                            >  1:1149922/1‑239 (MQ=255)
                                            ggCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGCAGTAATCGCCCC‑GCGCACCACAGGAGGCGTTCCGAGTCG‑CCCTTTATTCACCGACGGAAACCCGGGGCTTTCACACACCTGCaaaaa                                                                                                                                                                                          >  1:1109205/1‑238 (MQ=255)
                                                 cAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCTTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGat‑a                                                                                                                                                                                     <  2:746118/238‑1 (MQ=255)
                                                        aTTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCg                                                                                                                                                                                                                 <  2:740294/204‑1 (MQ=255)
                                                        aTTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGAAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CCCTTTATTCACCGTCGGTACGCCg                                                                                                                                                                                                                 >  1:740294/1‑204 (MQ=255)
                                                         ttAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGATTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAg                                                                                                                                                                             <  2:1149922/238‑1 (MQ=255)
                                                                  tgtgCTCCGAATCGAGCTTTTTGTCTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATAGTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCt                                                                                                                                                                   <  2:720176/239‑1 (MQ=255)
                                                                  tgtgCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CCCTTTATTCACCGTCGGAACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCgaggagggaccc                                                                                                                                                                    >  1:1321789/1‑232 (MQ=255)
                                                                   ttcttCCGCATCCAGCTTTTTTTTTTTCTGGTAACCTTGGTGTGCCTTTTTCCAGGCTGCATCGTTGTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGGTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCtt                                                                                                                                                                  <  1:704809/235‑1 (MQ=255)
                                                                   gtgCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCtt                                                                                                                                                                  <  2:1321789/239‑1 (MQ=255)
                                                                      cTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTC‑CACTTTATTCACCGTCGGTACGCCGCGGCTTTCCAGCACCTGCAAAATGAT‑ATTTCCCGGCAGCGCACCTTCgg                                                                                                                                                               >  1:274517/1‑239 (MQ=255)
                                                                           aaTCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCGGTTCAC‑CGGAAGTAATCGCCCC‑GCACACCACAGAAGTCGTTCCGACTTG‑GCCTGTATTCACCGTCGGTACGCAGTGGCTTTCCAGCACCCGCAAAAGGTT‑ATTGCCGAGGAGCGCAACTTAGGGATcc                                                                                                                                                          >  1:1018869/1‑238 (MQ=255)
                                                                           aaTCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCTCCCC‑GCGAACCACAGGAGTCGTTCCGGGTTG‑CACTTTATTCACCGCCGGTACGCCGTGGCTTTCCAGCACCTGCAAAA‑GATAATTGCCGAGTAggaccccgtcggagacg                                                                                                                                                          >  1:654684/1‑223 (MQ=255)
                                                                           aaTCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTAAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCg                                                                                                                                                          >  2:46959/1‑239 (MQ=255)
                                                                                    ttttGTCTTTTTCGTAACCTTGCGGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGaa                                                                                                                                                 <  1:1281106/239‑1 (MQ=255)
                                                                                     tttGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAAGGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGaa                                                                                                                                                 >  2:1031082/1‑238 (MQ=255)
                                                                                                    aCCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACggggg                                                                                                                                 <  2:274517/239‑1 (MQ=255)
                                                                                                       tggcttcGCGTTTTTCCACGCTGCATCGTTTCCATCTTTAAAGAAGAAAGCGCCATTCCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAg                                                                                                                              <  2:1139823/237‑1 (MQ=255)
                                                                                                        tgctgcGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCCAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAg                                                                                                                              >  2:939278/1‑238 (MQ=255)
                                                                                                        tgctgcGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAg                                                                                                                              >  2:1299498/1‑238 (MQ=255)
                                                                                                        tgctgcGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAg                                                                                                                              >  2:1082302/1‑238 (MQ=255)
                                                                                                        tgctgcGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGAACGCCGTGGCTTTCCAGAACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTCTCGATTTTTGAACCGACTTTAACGGGGGAAg                                                                                                                              >  2:768337/1‑238 (MQ=255)
                                                                                                         gctgcGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGAACCTGCAAAATGAT‑ATTCCCGAGTAGCGACCCTTCGGTTTCGCTTTTTGAACCGACTTTAACGGGGGCAgc                                                                                                                             >  2:1231929/1‑238 (MQ=255)
                                                                                                         gctgcGAGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATCTTCCGGAT‑AGATATCAAGTTCAC‑CGGAAGTACTCGCCCC‑GGGCACCACAGGTGTCGTTCCGCGTTG‑CACTTTATTCACCCTCGGTACCACTTGGCTTTCCGGCACCTCCAAAATGAC‑ATTGCCGAGTCGAGCACCCTCGGTATCGATTTTTAAACCGACTTGAACGGGGGagacc                                                                                                                            >  1:569534/1‑235 (MQ=255)
                                                                                                               cgTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGATGTAATCGCCCC‑GCGCACCACAGGAGCCGTTCCGAGTTG‑CCCTTTATTCAACGTCGGTCCGCCGTGGCTTTCACGCACCTGCCAAATGAT‑ATTCACTGGCAGCGCACCTTCGGTATCGATTTTTGAACACCCTTTAACGGGGAAAgccgcccg                                                                                                                       >  1:1172473/1‑236 (MQ=255)
                                                                                                                     tccccttcgcctCGTTTTCCTCTTTAAAGAACAAAGCTCCATTGCCGGTTTATTCCGGAT‑AGATGTCCAGTTCAC‑CGGAAGTAACCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCTCCTGCAAAATGAC‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGc                                                                                                                <  1:498519/228‑1 (MQ=255)
                                                                                                                          gCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGCCTTTAACGGGGGAAGCCCCCTGTAGCGCCAGGc                                                                                                            >  2:1182139/1‑238 (MQ=255)
                                                                                                                          atgatcgttttttCACTTTTAAAGAAGAAGCCGCCGTTGCCGGTTTTATCCGGTT‑AGATCTCCAGTCCAC‑CGGAAGTCATCCCCCC‑GCGCACCACAGGAGTCGTGCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGGGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCt                                                                                                           <  1:312163/230‑1 (MQ=255)
                                                                                                                            tggaTCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCa                                                                                                         <  2:543817/236‑1 (MQ=255)
                                                                                                                              cATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACg                                                                                                       >  2:687741/1‑239 (MQ=255)
                                                                                                                                  ttttttctCTTTAAATAAAAAAGCGCCTTTGCCGTGTGATTCCGGGA‑CGTTATCCTGTCCAC‑CGGAAGTAATGGCCCC‑GCGCACCCCAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGATTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTg                                                                                                   <  1:687741/232‑1 (MQ=255)
                                                                                                                                  gTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATTTCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTg                                                                                                   <  2:1137560/239‑1 (MQ=255)
                                                                                                                                  cttttTATCTTTAAAGAAGAAAGCGGCATTGCCGGTATTATCCGGAT‑GGATGTCCCG‑TCACACGTAAGTAATCGCCCC‑CGGCACCACAGGAGCGCTTCCGAGTTG‑GACTTTATCCACCGTGCGTCTGCCGTGGCTTTCAGTGTACTGCAAAATGAT‑AGTGCAGAGGAGGACTCCTGCGATATCGATTTTGGAACCGACTGTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTg                                                                                                   <  1:1267350/238‑1 (MQ=255)
                                                                                                                                    ttttATTTTTTAAGAAGAAAACTCCATTTCCGGTATTTTCCGGTG‑AGATTTCCAGTTCCC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGGTTCTTTCCGAGTTG‑CCCTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑TTTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGcc                                                                                                 <  1:165857/239‑1 (MQ=255)
                                                                                                                                    tttCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTg                                                                                                                                                                                                <  2:981687/145‑1 (MQ=255)
                                                                                                                                    tttCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTg                                                                                                                                                                                                >  1:981687/1‑145 (MQ=255)
                                                                                                                                       cATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CCCTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCTCCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAAc                                                                                              <  2:964438/239‑1 (MQ=255)
                                                                                                                                             tAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGcccctgtct                                                                                          >  2:312163/1‑230 (MQ=255)
                                                                                                                                               aaaaagaaAGCCCCATTCCGCGTATATCCCGGATGAGTTA‑CCATTTCCC‑CGGAAGTAACCGCCGC‑GGCCCCCACAGGAGTTGTTCCGAGTTG‑CCCTTTATTCACCGTCGGTCCGCCGTGGCTTCCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCTGTATCGATTTTTAAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAg                                                                                      <  1:939278/236‑1 (MQ=255)
                                                                                                                                                    caacgccgctttgccgtgtattcccGGAT‑AGGTCCCCGGGTCAC‑CGGAAGTTATCGCCCC‑GTGACCCACAGGAGTAGTGCCGGGTTG‑CACTTTTATCCCCGTCGGTACGCCGTGGCTTTCCAGCACCTGCTAAATGAT‑ATTGCCGAGTACCGCTCCTTCGGTATCGATTTTTGAGCCGACTTAAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAAc                                                                                 <  1:1276603/216‑1 (MQ=255)
                                                                                                                                                          agacaggCCGGTATATTCCGGAT‑AGATTTCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGccc                                                                           <  2:15369/233‑1 (MQ=255)
                                                                                                                                                           ccttttccGGTATATTCCTGAT‑AGATTGCCAGTTCCC‑CGGAATTACACCCCCC‑GCGCCCCACAGGAGTTGTTCCGAGTTG‑CCATTTATTCCCCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCGGAGTAGCGCACCTTGGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGccc                                                                           <  1:1086640/232‑1 (MQ=255)
                                                                                                                                                            ctttGCTGTTATATCCCTGAT‑TGTTTTCCAGTTCCC‑CGGAGTTACTCGCCCA‑CCCCCCCACGGGAGTCGTTCCGGTTTG‑CACTTTATGCCCGGTCGGTACGCCGTGCATTTCCAGCCCTTGCAAAATGAT‑ATTGCCGAGTAGCTCCCGTTCGGTATCGATTTTTGACCCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCag                                                                         <  1:1265732/237‑1 (MQ=255)
                                                                                                                                                            ctttGCCGGGATTTTCCGGTA‑AAGTATCCATTTCAC‑CGGAAGTAAGCCCCCC‑GCGCCCCACGGGGGGCGTTCCGAGTTG‑CAGTTTATTCACGGTCGGTACGCGGTGGTTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTGGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCag                                                                         <  1:1182139/237‑1 (MQ=255)
                                                                                                                                                                       atttCCGGAT‑AGTTTCCCATTCCCC‑CGGCAGTAACCGCCCC‑GCCCACCACGGTACTCCGTCC‑TGTTGCCACTTGATTACCCGTCGGTACGCCGTCGCTTTCCAGCACCTGCAAAATGAT‑AGTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTACCGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCAAACATAACCAGTGAACCTGCCCAGAGCTTTAagag                                                              <  1:249382/237‑1 (MQ=255)
                                                                                                                                                                               at‑agataTCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCACTGAACCTGCCCCGAGCGTTAGGAGTGGcctta                                                      >  2:822898/1‑235 (MQ=255)
                                                                                                                                                                                    atatCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCCCGGCTGCCAACATAACCAGTGAACCTGCCCAGACCTTTAGAAGGGGGCTGATGC‑t                                                 >  2:166481/1‑239 (MQ=255)
                                                                                                                                                                                    atatCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑t                                                 >  2:402781/1‑239 (MQ=255)
                                                                                                                                                                                    atatCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGAAGGGTTACGGTGGCCAACATAACCAGTGAACCGTCCCAAGGCGTTAAAAGGGGGCTGACGC‑t                                                 >  1:156723/1‑239 (MQ=255)
                                                                                                                                                                                     ttcccAGTTCCC‑CGGAAGTAATGCGCCC‑GCGCCCCACCGGAGTCGTTCCGAATTG‑CCCTTTAGTCCCCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAAGGAT‑ATTGCCGACTAGCGCAGCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑t                                                 <  2:1064894/235‑1 (MQ=255)
                                                                                                                                                                                         cAGTTCGA‑CGGAAGTAATCGCCCC‑GAGCTCCACAGGAGTCGTTCCGAGTTG‑CCCTTGATGCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCt                                            <  2:1210143/239‑1 (MQ=255)
                                                                                                                                                                                         cAGTTCCC‑GGGATGTATTCGCCCCGGCGC‑CCACAGGAGTCGTTCCGGTTTG‑CCCTTTATTCTCCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGTGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCt                                            <  1:498500/239‑1 (MQ=255)
                                                                                                                                                                                         cAGTTCCC‑CGGAATTAATCGCCCC‑GCGCACCACAGGGGTCGTTCCGAGTTG‑CACTTTATACACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCt                                            <  2:1186118/239‑1 (MQ=255)
                                                                                                                                                                                           gTTCAC‑CGGAAGTAATCGGCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTAGTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCa                                          <  2:625413/239‑1 (MQ=255)
                                                                                                                                                                                             tccc‑cGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCAt                                         <  2:654684/235‑1 (MQ=255)
                                                                                                                                                                                              ccc‑cGGAATTAATCGCCCC‑GCGCACCACAGGGGTCGTCCCGAGTTG‑CTCTTTATTCACCCTCGGTCCGCCGTGGCTTTCCACCCCCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTc                                       <  2:487866/237‑1 (MQ=255)
                                                                                                                                                                                              ccc‑cGGAATGAAGCGCGCC‑GCTCCCCATAGGAGGCGTTCAGATTGC‑CGCTGTATACACCGCTGGTACGCGGGGTATTTACAGCGATGGCAAAATGAT‑AGTGCAGAGTAGCGCACCTTCGGTATGGATTTTTGCACCGGTTTTAACGGGGGAAGTCACCTTGAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGA‑TTTCCTCATTc                                       <  1:1038200/237‑1 (MQ=255)
                                                                                                                                                                                              cAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGat‑a                                                                                                                                                                                     >  2:640257/1‑98 (MQ=255)
                                                                                                                                                                                              cAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCgg                                                                                                                 >  2:754613/1‑166 (MQ=255)
                                                                                                                                                                                              cAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCgg                                                                                                                 <  1:754613/166‑1 (MQ=255)
                                                                                                                                                                                                  cGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGATGGGCATGATGC‑TTTCCTCATTCttt                                    >  2:442923/1‑239 (MQ=255)
                                                                                                                                                                                                      aGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAACGTGGCATGATGC‑TTTCCTCATTCTTTTACt                                >  2:1095217/1‑239 (MQ=255)
                                                                                                                                                                                                         aaTCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCCCCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCt                                            <  2:100467/224‑1 (MQ=255)
                                                                                                                                                                                                              cccc‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCCACATAAACAGTGAACCTGCCCAGGGCTTTAAGAGAGGCACGATGC‑CTTCCTCCTACTTTTACTGTTGttt                         >  2:1273241/1‑238 (MQ=255)
                                                                                                                                                                                                               ccc‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCGGGCTCACGGCAGGCAAAATAACCCGTGAACCTGACCAAAGCTTTAAGGAAGGCATGGTGCATTCCCTCATCTTTTTACTGTtttttt                        >  1:1210737/1‑239 (MQ=255)
                                                                                                                                                                                                                 ccggccaccacAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTTCGCCGTGGCTTTCCAGCCCCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCa                      <  2:1189789/234‑1 (MQ=255)
                                                                                                                                                                                                                  ccccccccccggggttCGTTCCGATTTG‑CACTTTATTACCCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑TTTGCCGAGTAGCGCCCCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAg                     <  1:402781/224‑1 (MQ=255)
                                                                                                                                                                                                                   gcgcACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGAGGC‑TTTCCTCCTTCTTTTACTGTTTTTTTCAGc                    >  2:668363/1‑239 (MQ=255)
                                                                                                                                                                                                                    cgcACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTACCGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAAACCGTGAACCCTCCCACAGCTTTAAAGGTGGCATGAGGC‑TTTCCCCATTCTTTTAccagtcccttttaaa                   >  1:100467/1‑225 (MQ=255)
                                                                                                                                                                                                                      caccacAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTCCCCACATAACCCGTGAACCCTCCCAGAGCCTTAAAAGGGGCATGACGA‑TTTTCCCCTTTTTTTACTGTTGtttttatagaa                 >  1:743093/1‑232 (MQ=255)
                                                                                                                                                                                                                         cacgGGAGTTGGTCCGGGTTG‑CACTTTATTCCCCGTCGGTACGCCGTGGTTTGCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCatg                                                       <  1:834873/199‑1 (MQ=255)
                                                                                                                                                                                                                          acaGGAGTTGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTaa             <  2:911980/239‑1 (MQ=255)
                                                                                                                                                                                                                                ttttgtCCGGGTTG‑CATTTTTTTCCCCGTGTGTACGCCGTGGCTTTCAAGCCCCTCAAAAATGTT‑ACTGCCGAGTAGCGCCCCTTCGGTATCGATTTTTGAACTGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTTACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGaa        <  1:1141834/233‑1 (MQ=255)
                                                                                                                                                                                                                                gTCGTTCCGATTTG‑CCTTTTTTTCCCCTTCGGTTCGCCGGGGCTTTCCAGCACCGTAAAAATGAT‑ATGGCCGAGTAGCGCACCTTCGGTATCGAGTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGaa        <  1:1082302/238‑1 (MQ=255)
                                                                                                                                                                                                                                   gTTCCGATTTG‑CATTTTATTCGCCGTCTGTCCGCCGTGGGTTTCCAGCACCGTGAAAATGAT‑ATTGCCCAGTAGCGCACCTTCGGTTTCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAg     <  2:569534/238‑1 (MQ=255)
                                                                                                                                                                                                                                   gTTCCGAGTTG‑CCCTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGccc                                                                           <  1:413800/169‑1 (MQ=255)
                                                                                                                                                                                                                                   gTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATa                                                                                           <  1:1021530/153‑1 (MQ=255)
                                                                                                                                                                                                                                   gTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATa                                                                                           >  2:1021530/1‑153 (MQ=255)
                                                                                                                                                                                                                                   gTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGccc                                                                           >  2:413800/1‑169 (MQ=255)
                                                                                                                                                                                                                                    ttCCGAGTTG‑CCCTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCa   <  2:25122/239‑1 (MQ=255)
                                                                                                                                                                                                                                     tCCGAGTTG‑CCCTTTATTCACCGTCGGTACGCCGTTGCTTGCGAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACGTTCGTTATCGATTTTTGAACCGACTTTATCGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCa   <  2:669159/238‑1 (MQ=255)
                                                                                                                                                                                                                                     tCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGATCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCAt  >  2:722698/1‑239 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                      
CATCCTGACGCACGGCGATAGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGAT‑AGATATCCAGTTCAC‑CGGAAGTAATCGCCCC‑GCGCACCACAGGAGTCGTTCCGAGTTG‑CACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGAT‑ATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCGGCAGGCTCACGGCTGCCAACATAACCAGTGAACCTGCCCAGAGCTTTAAGAGTGGCATGATGC‑TTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCAT  >  NC_000913/2219068‑2219532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A