Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,192,033 A→C 17.9% V201G (GTG→GGG)  thiG ← thiamine biosynthesis ThiGH complex subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,192,0330AC17.9% 225.2 / 5.4 111V201G (GTG→GGG) thiGthiamine biosynthesis ThiGH complex subunit
Reads supporting (aligned to +/- strand):  ref base A (48/33);  new base C (2/28);  total (50/61)
Fisher's exact test for biased strand distribution p-value = 2.73e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

TTTGCCGTTGATACGCAGGCGGATGTCGTCCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAAT  >  NC_000913/4191799‑4192266
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           
tttgcgtgttaTACGCAGGCGGATGGCTGCCCAGCCCAGTGGTCGCCGGCAATCGTGGAAGGTTTCCAGGCCGATGCCTCCGAAAATCGGGTTCGCGGGCTGGTGCCATGAGCACAATAACTGCGGCTG‑CCCGGTCCGGACTGACTTGCAAGTAGGCCTGCTTCTCCCGCCAGACGCAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACcg                                                                                                                                                                                                                                          <  1:891593/228‑1 (MQ=255)
 ttGCCGTTGATACGCAGGCGGATGTCGTCCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGCATTCACTAaca                                                                                                                                                                                                                                             >  2:261784/1‑234 (MQ=255)
       ttGATACGCAGGCGGATGTCGTCCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGGTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGGGCCAGTAGGCCTGCTTCTACCCCCAGACGAACTGCCTTCCCCATGTTT‑ACGGGACCGTCCCGGACGCAAAACCCCCGATTCACAAacaaacgcccctta                                                                                                                                                                                                                                  >  1:605118/1‑228 (MQ=255)
                  gCGGATGTCGTCCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGCAATGCCTTCGCCCTGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGCATTCACTAACACCCCGTCGGCCCCCCTTTCCa                                                                                                                                                                                                                        >  2:388128/1‑238 (MQ=255)
                     gtgtccgtcCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAgcg                                                                                                                                                                                                                     <  2:464789/233‑1 (MQ=255)
                     gATGTCGTCCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATAGCCGCATTCACTAACACCACGTCGGCCCCCATTTCCAggc                                                                                                                                                                                                                     >  2:410617/1‑236 (MQ=255)
                      attgcggcccAGTCCAGTTGTCCCCCGCGGTCGTTGAAGGTTTTCATGCCGATGCCCCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAgcgc                                                                                                                                                                                                                    <  2:1088202/231‑1 (MQ=255)
                        gtcccccccGTCCTGTTGCCCCCATGGTTCGGTGAGGGTTTTAATGCCGGTGCCTCCAGAAACCCGGGCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCGGGACTGGCTGGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTg                                                                                                                                                                                                                 <  1:1276102/234‑1 (MQ=255)
                            tcCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCTTGAACAAAATAACTGCGGCTG‑ACCGGTCCGGACTGCCGTGCCATTAGGCCTGCTCCTACAGCAAGACGAACTGCCTTCGCCATGATG‑ACGGGATCGTCCCCGCCGGCACACGCCGGATTACCTAAAACCGCGCCGGCCCCCATTACAAGCCCCAgcggg                                                                                                                                                                                                             >  1:374750/1‑237 (MQ=255)
                            tcCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGCTCGTCCGCGCCGGCCATGGCCGTATTCCCTAACACCCCGCCGGCCCCCATTTcacacccctccccg                                                                                                                                                                                                             >  1:321431/1‑226 (MQ=255)
                            tcCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGcgcg                                                                                                                                                                                                             >  2:315435/1‑239 (MQ=255)
                            tcCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGcgcg                                                                                                                                                                                                             >  2:600058/1‑239 (MQ=255)
                                      gtTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCCCGTCGGCCCCCATTTCCAGCGCCTGCGCGCCATGGCTgg                                                                                                                                                                                                   >  2:449825/1‑239 (MQ=255)
                                       ttGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCCAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGCAATGCCTTCGCCCTGTTG‑ACGGGATCGTCCCCGACGCACATCGCCCTATTCCCTAAAACCGCGTCGGCCCCCATTTCCAACCCCCGCGCggacacggcgga                                                                                                                                                                                                  >  1:425095/1‑229 (MQ=255)
                                       ttGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGCAATGCCTTCGCCATGTTG‑ACGGGATCGGCCCCGACGGCAATCGCCGTATTCACTAAAACCCCGTCGGCCCCCATTTCAAGCGCCTCGGCGGCCCGGCTggg                                                                                                                                                                                                  >  2:1282407/1‑239 (MQ=255)
                                            gCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGCCGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGCCGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCCGGACCTGCCCGGCATGGCTggagacg                                                                                                                                                                                              >  2:481891/1‑233 (MQ=255)
                                            gCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCCTTTCCAGCGCCTGCGCGGCCTGGCTGGGAAcc                                                                                                                                                                                              >  2:955957/1‑237 (MQ=255)
                                            gCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCCCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACg                                                                                                                                                                                              >  2:484907/1‑238 (MQ=255)
                                                gCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGGATTCACTAAAACCGCGTCGGCCCCCATTTCCAGCGCCTGCCCGGCATGGCTGGGAACGCCGa                                                                                                                                                                                          >  2:1285096/1‑238 (MQ=255)
                                                              tttgCATGGCGAGGCCCCCAGAAACCCGGTCAGGGGGCTGGTGGCATGAGCAAAATAGCTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACa                                                                                                                                                                            <  2:1255513/238‑1 (MQ=255)
                                                                ttCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCCCCTGCGCGGCATGCCTGGGAAGGCCCATGCCAGCATCGACAacc                                                                                                                                                                         >  2:336750/1‑239 (MQ=255)
                                                                  caggCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAaccac                                                                                                                                                                       <  2:832102/236‑1 (MQ=255)
                                                                  cATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAaccac                                                                                                                                                                       <  2:1052640/239‑1 (MQ=255)
                                                                  cATGCCGATGCCTCCAGAAATCCGGTAAGCGGGTTGGGGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGGGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAaccac                                                                                                                                                                       <  2:1317652/239‑1 (MQ=255)
                                                                      ccGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCCCGGCATTGCTGGGAACGCCGATGCCAGCATCCACACCCACCgg                                                                                                                                                                    >  2:932568/1‑238 (MQ=255)
                                                                       ctaggcccccatatagccGGTCAGCGGGCTGGTGGCATGAGCAAAATAGCGGCGGCTG‑CCGGGTCCGGACGGACGTGCCAGTGGGCCTGCTTCTACCGCCAGACGAATGGCCTCCGCCATGTTG‑ACGGGATCGCCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCa                                                                                                                                                                  <  1:315435/223‑1 (MQ=255)
                                                                       cgttGCCTCACGAATTCCGGTCAGGGGGCGGGTGGCCTG‑GCGAAATAACCTCGGCCGCCCCGGGCGGGCTTGACGGGCCAGTAGGCCTGCTTCCACCGCCGGAAGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCa                                                                                                                                                                  <  1:202967/236‑1 (MQ=255)
                                                                       ccgtctcTCCAGAAACCCGGCTCGGTGGTTGGGGGCCTGGGAAAAATAACTGCGGCTG‑CCGGGTCCGGACTGCCGTGCCAGTAGGCCTGCTTCTCCCGCCAGACGAAATGCCTTCGCCATTGTG‑ACGGGATCGGCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCa                                                                                                                                                                  <  1:600058/233‑1 (MQ=255)
                                                                       cGATGCCTCCAGAAATGCGGTCAGCGGGCTGGGGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCa                                                                                                                                                                  <  2:223524/239‑1 (MQ=255)
                                                                        gATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCTCCTGCTCGGCATGCCTGGGAACGCCGAGGCCCGCATCGACCACCCCCgcaa                                                                                                                                                                  >  2:21959/1‑235 (MQ=255)
                                                                        gATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGCCAACCACCGGc                                                                                                                                                                   >  2:1026991/1‑237 (MQ=255)
                                                                        gATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGc                                                                                                                                                                   >  2:1250610/1‑237 (MQ=255)
                                                                         aTGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGc                                                                                                                                                                   >  2:51903/1‑236 (MQ=255)
                                                                              ccccagttgccgggtcgCGGGCTGGGTGCATAGGTAAATTCACTGCGGCTC‑CCCGGGCCGGCTTGACGTGCCGTTGGGCGTGCTTCTCCCGCCAAACGAAATGCCTTCGCCATGTTG‑CCGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑c                                                                                                                                                          <  1:650396/223‑1 (MQ=255)
                                                                               ccAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCCCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCTGCTGCAGCCATCGACAACCACGGCAACCGTGG‑cc                                                                                                                                                         >  2:680004/1‑239 (MQ=255)
                                                                                    aaTCCGGTCAGCGGGCTGGTGGCATGAGAAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑Cctg                                                                                                                                                       <  2:818531/236‑1 (MQ=255)
                                                                                        cGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGGGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGa                                                                                                                                                  <  2:338516/237‑1 (MQ=255)
                                                                                          gTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTCCTGGataat                                                                                                                                              >  2:1210870/1‑239 (MQ=255)
                                                                                            cggCGGGGTGGTGGCTTGGGAAAAATACCCGGGGCTG‑ACGGGGCGGGGCTGACGTCACAGTAGGCCTGCGTCCGCCGCCAGCAGAACTGCCTTCGCCATGTTG‑ACGGGCTCGCCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGataata                                                                                                                                             <  1:634595/236‑1 (MQ=255)
                                                                                                gtgtgggtggCATGACGAAAAATACGCGGGCTC‑CCGCGTGCGGACTCACGTGCTAGTGGGCACCGTTGCGCCGCCAGACGAATGGCCTTCCCCATGTTG‑ACGGGATCGTCCGGGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAAtctc                                                                                                                                        <  1:978557/234‑1 (MQ=255)
                                                                                                         gCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGGTAATAATCTCCCGCATGgc                                                                                                                               >  2:113620/1‑239 (MQ=255)
                                                                                                           tgaacaaaaaTACCCGCGGGCG‑GCCGGTCGGGCCTGCCGTGCCGGTAGGCCTGCTTCTCCCGCCAAACGAAATGCCTTCTCAATGTTG‑ACGGGATCGTCCGGGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGgcg                                                                                                                              <  1:51903/232‑1 (MQ=255)
                                                                                                              aGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACTCCGATGCCAGCATCGACAACCACCGGCCCTTGGG‑CCTGCTGGATAATAATCTCCAGCTTGGCCCggg                                                                                                                          >  2:1034578/1‑239 (MQ=255)
                                                                                                              aGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAaccac                                                                                                                                                                       >  2:823822/1‑195 (MQ=255)
                                                                                                              aGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAaccac                                                                                                                                                                       <  1:823822/195‑1 (MQ=255)
                                                                                                              aGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGAAAACCACCGGCACTGTGG‑CCTGCTGGGTATTAATCTCCAGCCTGGCCCggg                                                                                                                          >  2:816184/1‑239 (MQ=255)
                                                                                                                       aaggCGGCTG‑CCCGGTCCGGACCGACGGTCCAGTAGGCCTGCTTCTACCGGCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAg                                                                                                                  <  2:325106/234‑1 (MQ=255)
                                                                                                                        cTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTCCTGGATAATAATCTCCACCATGGCGCGGGTTTC‑CAGTc                                                                                                                >  2:426656/1‑238 (MQ=255)
                                                                                                                         ggcggcgG‑CCCGGTCCGGACTGACGTTCCAGTAGGTCTGCTTCTACCGCCAGACGAAATGCCTTCGCAATGTTG‑ACGGGATCGTCCGCGGCGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTccc                                                                                                              <  1:1026991/238‑1 (MQ=255)
                                                                                                                          gCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGGTGCCAGCATCGACAACCACCGGCACTGAGG‑CCGGCTGGGTAATAATCACCAGCATGGCCCGGGTTTC‑CAgcc                                                                                                                >  1:543033/1‑234 (MQ=255)
                                                                                                                             gCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGCACGCCGATGCCAGCATCGACAACCACCGGCACTTTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCCGAt                                                                                                          >  2:304240/1‑239 (MQ=255)
                                                                                                                             gCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGCCGGCCCCCATTTCCACCGCCGGCTCGGCATGGCCGGGAACGCCGATGCCAGCATCGGCAACCACCAGCCAGGGGG‑CCTGCCGGACAATAATCTCCCACATGgccacggtatccatcccccgg                                                                                                            >  1:988127/1‑219 (MQ=255)
                                                                                                                              cgg‑CCCGGGCCGGCCTTAGTGGCCAGTAGGCCTGCTTCGACCGCCAGACGAAATGCCTGCGCCATGTTG‑CCGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGAt                                                                                                          <  2:425095/236‑1 (MQ=255)
                                                                                                                                  cccGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGGTAATAATCTCCAGCATGGCGCGGGGTTC‑CAGTCCCCGGTTCGa                                                                                                      >  2:270015/1‑239 (MQ=255)
                                                                                                                                  cccGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGCGAACGCCGATGCCAGCATCGACCACAACAGGCCCAGGGGCCCTATGGGATAA‑GCTCTCCACCACGGCGCGGGATTC‑CCGCCCCTAGTTCg                                                                                                       >  1:184304/1‑238 (MQ=255)
                                                                                                                                      gTCCGGACTGACGGGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGGTGGGAAAGCCGGTGCCAGCATCCGCAACCCCCGGCCCTGTGG‑CCGGCTGGGAAATAAACTCCAGCCGGGCGCGGGGTTC‑CAGGCCCCGAtttgggg                                                                                                    >  1:325106/1‑232 (MQ=255)
                                                                                                                                       tCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGGTGCCCGCATCCACCACCACCGGCCCTTGGG‑CCTGCCGGGACATAAACCTCAGCCTGGCGCCGGGTTC‑CAGACCCCCCTTCGGGCCaa                                                                                                 >  1:377971/1‑239 (MQ=255)
                                                                                                                                       tCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGACCGCCGATGCCCGCATCGACAACCACCCGCACCGTGC‑CCCGCCGGGTACTAAACCCCAGCATGGCCCGGGGTTC‑CAGGCCCTGATTCGAGcac                                                                                                  >  1:528642/1‑236 (MQ=255)
                                                                                                                                                aCGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGCACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTTCTGGTGAATAATCTCCAGCATGGCGCGGGTTTC‑CCGGCCCCGATTCGAGCCAACCAgcgcg                                                                                         >  1:338963/1‑238 (MQ=255)
                                                                                                                                                 cGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGcc                                                                                       >  2:48240/1‑239 (MQ=255)
                                                                                                                                                    gCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCa                                                                                                                                   <  2:1062749/193‑1 (MQ=255)
                                                                                                                                                           ggCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCAt                                                                              >  2:787573/1‑238 (MQ=255)
                                                                                                                                                             ccTTCTTCTCCCGCCAGCCGAATTGCCTTCCCCATGTGG‑GCGTGAGCGGCCGCGACGGCAATCGGCTTATCCCCTAACCCCGCGTCGGCCCCCATTGCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCAc                                                                           <  1:60693/239‑1 (MQ=255)
                                                                                                                                                              cTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGGTAATAATCTCCAGCATGGCGCGGGTTTC‑CCGTCCCTGATTCTAGCCCAACGGCCCGCCGCGCGGcgccccc                                                                          >  1:789003/1‑233 (MQ=255)
                                                                                                                                                              cTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGt                                                                                                                         >  2:338760/1‑193 (MQ=255)
                                                                                                                                                               ttgttttctccggcatgggaaTGGCTTCGCCAGGTTGTGCGGGAACGCCCGCGACGGCAATCGCCGTTGCCGCGACACCCCCGTCGACCCGCATTACCAGCCCCTGCAGGGCAGGGCTGGGAACGCCGATGCCCGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCCCCAGCATGGCGCGGGTTTC‑CAGTCCCGGATTCGAGCCAAGCGGCGCGCGGAGCGGCATcgc                                                                           <  1:426656/219‑3 (MQ=255)
                                                                                                                                                                 cTTCTACCGCCAGACGAAATGCCTTCGCCATGTGG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTACCACCGCGTCGGCCCCCAGTTCCAGCGCCTGCGCGGCATGTCTGGGAACGCCGACGCCAGCATCGCCAACCACCGGCACTCTGG‑CCTGCTGGCAAATCAGCCCCCACATGGCCCGGGGTTCACAG‑CCCAGATGTGAGCCAATAGGCCCGcccgcgggaccccaccc                                                                        >  1:126349/1‑223 (MQ=255)
                                                                                                                                                                    cTACCGCCAGACGAAGTGCCTGCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCAGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGca                                                                    <  2:1165438/239‑1 (MQ=255)
                                                                                                                                                                      aCCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGccc                                                                   >  2:667632/1‑236 (MQ=255)
                                                                                                                                                                             gACGAAACGCCTTCGCCATGTGG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGAct                                                           <  2:528642/239‑1 (MQ=255)
                                                                                                                                                                               cGAAATGCCTTCCCCTTGTTG‑ACGGGATCGTCCGCGACGGCAACCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGAc                                                            <  2:789003/236‑1 (MQ=255)
                                                                                                                                                                                    tGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCa                                                    <  2:962445/239‑1 (MQ=255)
                                                                                                                                                                                       cTTCGCCTTGTTG‑CGGGGTTCGTCCGGGACGGCAAGCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGAc                                                 <  2:270778/239‑1 (MQ=255)
                                                                                                                                                                                         tgtccATTTTG‑AGGGGATCGTCCGCGAGGGCAACCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGt                                               <  2:387018/236‑1 (MQ=255)
                                                                                                                                                                                            ccATGTTG‑ACGGGATCCGCCGCGACGGCAATCCCCTTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTa                                            <  2:106946/239‑1 (MQ=255)
                                                                                                                                                                                             cATGTTG‑ACGGGATCGTCCGGGACGGCAATCGCCTTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTa                                            <  2:325574/238‑1 (MQ=255)
                                                                                                                                                                                              ttGTTG‑CCGGGCTCGTCCGCGCCGGCAATCGCCGTCTTCCCCAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGGGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCCCCGGCCCTGGGG‑CCTGCTGGATAATAATCCCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTaca                                          <  1:113620/238‑1 (MQ=255)
                                                                                                                                                                                              tgtttG‑CCGGGTTCGCCCCCGCCGGCACTCGCCGTAGTCACTACCCCCGGGTCGGCCCCCATTCCCAGCGCCTGCGGGGCATGGCGGGGAACGCCGATGCCAGCATCGACAGCCACCGGCCCTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTaca                                          <  1:959958/236‑1 (MQ=255)
                                                                                                                                                                                              tgttgg‑ACGGGGTCGCCCGCGCCGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTaca                                          <  2:649953/234‑1 (MQ=255)
                                                                                                                                                                                              gtGTTG‑ACGGGACGGTCCGCGACGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTaca                                          <  2:988127/238‑1 (MQ=255)
                                                                                                                                                                                              aTGTTG‑ACGGGATCGTCCGGGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTaca                                          <  2:652357/239‑1 (MQ=255)
                                                                                                                                                                                                  gtgccGGGCTCGTCCGCGACGGCAAGCGCCGGTTTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTTCTGGATAATAATCTCCAGCATGGCGCGGGTTGC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTaca                                          <  2:374750/232‑1 (MQ=255)
                                                                                                                                                                                                    gccGGGATCGTCCGCGGCGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCa                                                    <  2:1027888/222‑1 (MQ=255)
                                                                                                                                                                                                      cGGGATCGCCAGCGCGGGCGAGCGCCGTAGTCACTAACCCCGCGCCGGCCCCAAGTCCCAGCGCCTGCGCGGCAGGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCCATGTGG‑CCTGCTGGATAATAATCTCCAGCAGGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATAc                                    <  1:932568/238‑1 (MQ=255)
                                                                                                                                                                                                          aTCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGa                                >  2:106365/1‑238 (MQ=255)
                                                                                                                                                                                                           tCGCCCGCCGCGGCCATCGCCGTATTCACAACCCCCGCGGCGGCCCCCATTTCCAGCGCCTGCGCGGTATGGCGGGGAACGCCGATGCCAGCATCGAAAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGAt                               <  1:1250610/238‑1 (MQ=255)
                                                                                                                                                                                                           cgcccccggccGGCAATCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGAt                               <  2:338963/228‑1 (MQ=255)
                                                                                                                                                                                                            cGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGCGCGGCATCACCGCTGCACAGCCGACTTCTTCCCGACGTTTACACAATccctctc                               >  2:1181338/1‑233 (MQ=255)
                                                                                                                                                                                                              tCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGGGGCCTCCCCGCGGCACAGCCGACTTCTTCCAGACGTTTaaacctgactcttaaaac                           >  1:1027888/1‑225 (MQ=255)
                                                                                                                                                                                                                cgtgACGGCAATCGCCGTTTTCCATAACCCCGGGGCGGCCCCCATTGCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGccc                         <  2:620270/236‑1 (MQ=255)
                                                                                                                                                                                                                cgggacgtaaaTCGCCGTATTCCCTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGccc                         <  2:321431/230‑1 (MQ=255)
                                                                                                                                                                                                                cgcgACGGCAATGCCCGTATTCCCCAACCCCGTGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGccc                         <  2:979789/239‑1 (MQ=255)
                                                                                                                                                                                                                cgcgACGGCAATCGGCGTATGCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCGGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGccc                         <  2:931579/239‑1 (MQ=255)
                                                                                                                                                                                                                cgcgACGGCAATCGCCTTAATCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGccc                         <  2:665509/239‑1 (MQ=255)
                                                                                                                                                                                                                cgcgACGGCAATCCCCGTATTCACTAACCCCGGCTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGccc                         <  2:739621/239‑1 (MQ=255)
                                                                                                                                                                                                                          aTCGCCGTATTCACTAACCCCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAgg               <  2:543033/239‑1 (MQ=255)
                                                                                                                                                                                                                              ccGTATTCACTAACCCCGCGGCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGgcagc           <  2:919224/239‑1 (MQ=255)
                                                                                                                                                                                                                              acagatccccTAACCCCCCGGCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCCCCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGgcag            <  2:542462/229‑1 (MQ=255)
                                                                                                                                                                                                                                      aCTAACCCCGCGTCGGCCCCCATTGCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTaca                                          <  2:746528/200‑1 (MQ=255)
                                                                                                                                                                                                                                       cTAACCCCGGGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAAt  <  2:849815/239‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           
TTTGCCGTTGATACGCAGGCGGATGTCGTCCCAGTCCAGTTGTCGCCAGCGATCGCTGAAGGTTTTCATGCCGATGCCTCCAGAAATCCGGTCAGCGGGCTGGTGGCATGAGCAAAATAACTGCGGCTG‑CCCGGTCCGGACTGACGTGCCAGTAGGCCTGCTTCTACCGCCAGACGAAATGCCTTCGCCATGTTG‑ACGGGATCGTCCGCGACGGCAATCGCCGTATTCACTAACACCGCGTCGGCCCCCATTTCCAGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGG‑CCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTC‑CAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAAT  >  NC_000913/4191799‑4192266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A