Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F18 I0 R1
|
274 |
115.5 |
2655328 |
86.7% |
2302169 |
226.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,201,277 |
A→C |
19.0% |
G137G (GGT→GGG) |
zraP ← |
Zn‑dependent periplasmic chaperone |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,201,277 | 0 | A | C | 19.0%
| 158.8
/ 3.8
| 71 | G137G (GGT→GGG) | zraP | Zn‑dependent periplasmic chaperone |
| Reads supporting (aligned to +/- strand): ref base A (49/6); new base C (3/13); total (52/19) |
| Fisher's exact test for biased strand distribution p-value = 1.92e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGCGCTGCTT > NC_000913/4201046‑4201514
|
gcTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCCTGGCTGGAACCGCCCGAAAGTTCGCAATTACTGTTAGTGGCAAA‑CCCTGTTTTCTGTCGCTGGCAACCAAACGGACAAACGGCTTGATTTCCACGTGGcccacccccataa > 1:1312075/1‑238 (MQ=255)
gcTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAATGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGccacaacccatag > 2:892099/1‑238 (MQ=255)
cTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGcccataccccgtt > 2:203410/1‑234 (MQ=255)
cTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATg > 2:58146/1‑239 (MQ=255)
tGGCATGCGATGGAACAGGCCGTGACCACCTGGGAAGGGCAACCCATTAAACCTGATTTAGATTCGGAGGCGATAGCGCATTTCGAGCGCCGCCAGACCCGCTTTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATg < 2:963658/238‑1 (MQ=255)
gggggtgaaactgcacggcacacccTGCGAAGGGCAAACGATTAACCCTAATTGAGATGCGCAGGCAATAGGGCACAGCGGGGGCCGCCAGGGCAGCTTTTCTGGTGATTTCAGCGTGGCATGGCTGGAAGCGACCGAAGGTTCGCATTTACGGTTAGGGGAAAC‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCGCTACCCATATGAgcgc < 1:524423/215‑1 (MQ=255)
gggtaaCAGTCCGGCACCCCCGGGGAGGGGAAACCCATCAACCCTGATTTAGATGCGCAGGCGTTAGGCAATTGCGGGCGCCCGCAGGGCCGCTCTTCTGTTGAGGTCAGCGGGGCATGGCGGGAAGCGCCCGAAGGTCCGAAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGccacc < 1:772623/234‑1 (MQ=255)
aCCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAgcc > 2:633352/1‑238 (MQ=255)
aCCGTGACCACCTGCGAAGGGCAAACCATTAAACCGGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGACGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCGGTCAACCCAACCAGAAAAGGGTCTGTTTTACAAATGGcccctacccaacagacacccccaaacccaagc > 1:1104878/1‑216 (MQ=255)
cGTGACCACCTGCGAAGGGCCAACCATTAAACCTGATTTAGATTCGCAGGCGAGAGCGCATATCGAGCGCCGCAAGAGCCGCTCTTCTGTTGATGTCAGCGGGGCATGGCGGGAACCGCCGGAAGGCTCGCACTTACTGTTAGTTGCACA‑CGCTGCTTTCTGTCCCAGGCACGCAAACAAGGAACGCTTGTGGTTTACCAGTGGGCCCCCCCCATATGaacacaaccccagcaccacgg > 1:1058289/1‑219 (MQ=255)
cGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCCCCTCAgccgcc > 2:882541/1‑239 (MQ=255)
cGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTCATTTACCAGTGGCCAATACCCCTTTTACCGCccccactcacaccccc > 2:1141487/1‑229 (MQ=255)
ggcacccatgtagaatgcaatagcATTAAACGTTATTTAGGTGCGGAGGTGATCGCGATAATGGAGCGCCTCCAGACCCGCTCTGCTTTTGATGTCAGTGGGGCATGGCTGGAAGCGCCGAAAGGTCCGAAATTACT‑TTTGTTGCAAATCTCTGATTTCTGTCCCTGGCAACCCAACGAGAAAACGTTCTGTTTTACCATTGCCCCATCCCCATTTGACCGCCACCTCCGCAGccgccg < 1:1196086/216‑1 (MQ=255)
tGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCACA‑CTCTGATTTCTGTCGCTGGCAACCCACCGAGAAAACGTTCTGATTTACCACTTGCCACTACCCATATGACCCCCaccacccaccccccccc > 1:292411/1‑228 (MQ=255)
tGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGt > 2:229338/1‑239 (MQ=255)
tGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCACTGGCCCATACCCATATGACCGCCACAACCGCAACCGCCGt > 2:967991/1‑239 (MQ=255)
gACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGGTTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGccgccgga > 2:666237/1‑237 (MQ=255)
gACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTCTTGATTTTCCAGTGGCCCCTCCCCATATGACGCCCACCACCACGGCAACCGTa > 2:194377/1‑239 (MQ=255)
gACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAAAGTTCTGATTTACCAGTGGCCCATACCCATAGGACCGCCACCACCGGACCCGCCGTa > 2:987011/1‑239 (MQ=255)
cGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGCAAGCGACCGAAGGTTCGCAATTACTGTTACTGGCCAA‑CTCCGAGTCCTGCCCCTGGCAACCCAACGGGAAAACGTTTTGATTTACCAGAGGCCCCAACCCCAAACAAGCCCACCACCGCAgcccaccaagccccatc > 1:231515/1‑224 (MQ=255)
gAAGGGAAAACCATTAACCCTGATTTAGTTTCGCGGGCGATAGCGCATATCGAGCGCCGCAAGGGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCCCCCGAAGGTTCGAAATTACTGTTAGTGGAAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGGGGCCCATCCCCATATGACCGCCACCACCGCAGCCGCCGTAgcccatgcc < 2:1008630/238‑1 (MQ=255)
cAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGCCCGCCACCACCGCAGCCGCCGTAACCCATGCCCATTcc > 2:757656/1‑238 (MQ=255)
tAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CCCTGATTTCTGTCGCTGGCAACCCAACGAGCAAACGATCTGATTTACCAGTGGCCCATCCCCATATGACCCCCCCCACCGCCTCCGCCGCAACCCACTCCCATTCCCGCCCcccg > 1:1017887/1‑239 (MQ=255)
gATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGACGCGCCCGAAGGTTCGCACTTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTCCCAGTGGCCCATACCCATATGACCCCCACACCCCCACCCCCCGAACCCCCTCCCCCTTCCgcgtcccccccgaaa > 1:1194786/1‑224 (MQ=255)
gATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAAt > 2:640485/1‑238 (MQ=255)
aTTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATa > 2:561122/1‑238 (MQ=255)
aTTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCCCCGCAGCCGCCGTACCCCACGCCCATTCCgcgcccccccggaaaaacgcct > 1:150213/1‑217 (MQ=255)
gCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATTCCCATTCCGGCTCCGCCCGGAATACCCGCCTCAg > 2:254367/1‑238 (MQ=255)
aTAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAACCGTTCTGATTTACCACTGGCCCCTACCCATATGACCGCCACCACCGCAGCCGCCGGAGCCCATACCCCTTCCGCCTCCCCACGGCAAAACCCCTTccccccccccg > 1:910278/1‑229 (MQ=255)
atCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCCTGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGCCGCTGGCAACCCAACGAGAAAACGTTGTGATTTACCAGTGGCCCATACCCATATGACCACCCACACACCAACCGCCGTAGCCAATCCCCATACCGGCCCCGCGCGGAAAACCCCCCTCAcccccaccaaaaccacgt > 1:612040/1‑224 (MQ=255)
atCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCCCGCGGAATACCCGCTTCAGCCATCGCGATATCCCGt > 2:64311/1‑239 (MQ=255)
aGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCCGGCAACCCAACGAGAAACGGTTCTGATTTACCAGTGGCCCATACCCATATGAACGCACCCACCGCCGCCGCCGTAGCCCCTGCCCATTCCGGCTCCGCGCCGAATAACCCCCTCAACCCCCCCGGTAACCCGTTTc > 1:717691/1‑238 (MQ=255)
gcgcCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCa > 2:28360/1‑238 (MQ=255)
cgccgcCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATCCCGGCTCCGCGCGGGATACCCGCTTCAGCCATCGCGATATCTCGTTTCAc > 2:664313/1‑238 (MQ=255)
gATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑ATCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACGGCACCAGCAGCAGCCCATGCCCATTCCGGCTCCGCCCCGAATACCCGCTTCCGCCAACGAGATATCTCGTTTCAACCGCaaacaacacaaaaaccgacgc > 1:633677/1‑220 (MQ=255)
gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCCTTCCGGCTCCGCGCGGCATACCCCCTTCAGCCATCGCGATATCTCGTTTCACCCGTACACCATCTAACGACTGACGCa > 2:1148632/1‑237 (MQ=255)
gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCaaa > 2:175000/1‑239 (MQ=255)
ggCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCtt > 2:461550/1‑239 (MQ=255)
cTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAACCCATCCCCATTCCGGCTCCGCCCGGAATACCCCCCTCCGCCATCGCGAAATCTCGTTTCACCCCTAATCCATTTAACGCCTGCCCCAAATTCTCCA‑CTCtttt > 1:1043659/1‑237 (MQ=255)
cTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTCACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGCATACCCCCTTCAGCCATCGCGATATCTCGTTTCACCCCTAACTCATCTACCGACTGTCGCACATTCTcccccccttt > 2:331476/1‑230 (MQ=255)
cccGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGCTTTCTGTCGCTGGCAACCCAACGAGACAACGTTCTGATTTCCCAGTGGCCCCTACCCATATGACCGCCAACACCCCAGCCGCCGTAGCCCATGCCCATTACGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCCCGTTTCACCCGTAACTCATCTAACGCCTGCCGCAAATTCTCCCTCTCTTTGGcacccg > 1:885165/1‑232 (MQ=255)
cccGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACcccg > 2:1070802/1‑239 (MQ=255)
ttCGTAATTCCGGTTAGGGGCAAC‑CTTTGATTTCTGGCGCTGGACACCCAACGAGAAAACGTTCTGATTTCCCAGTGGCCCATCCCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAAttt < 2:1104878/238‑1 (MQ=255)
cGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCCCGCTACCTCGTTTCACCCGTAAATCATCTAACGACTACCCCCAATTCCCCAACTTTTTGGCGAccccctcacatttcc > 1:138207/1‑226 (MQ=255)
ttgcTGTTAGTGGAAAC‑CTCTGTTTTTGGTCGCTGCCACCCCAACGAAAAAACGTTCTGATTTACCAGGGGCCCATCCCCATATGCCCCCCCCCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTa < 2:1312075/236‑1 (MQ=255)
cacaggTTAGTGGCAAT‑CTCTGTTTCCGGTCGCTGGCAACCCAACGATAAACCGTTCTTATTTACCAGTGGCCCATCCCAATATGCCCGCCCCCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCAACCGCGTTAATTTtgctgc < 2:622283/232‑1 (MQ=255)
gTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGTTGCTATCCgg > 2:635480/1‑239 (MQ=255)
aGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGGAGCCCAGGCCCATTCCGGCTCCGCGCGGAATACCCCCTTCCGCCAACGCGATATCCCGTTTCACCCGTAACTCATCTAACGTCTCACGCCCATGCCCCCTCTCTTTTGCGACCCAGTTAATTTtgttgcgaccgggggg > 1:672223/1‑229 (MQ=255)
gCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCCCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGtt > 2:1158439/1‑238 (MQ=255)
cAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTcg > 2:910224/1‑239 (MQ=255)
a‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCCCGGAATACCCGCCTCAGCCATCCCGATATCTCGTTTCACCCGTACCCCACCTAACGACTGCACCAAATTCTCCATCTCTTTGCCACACGCGTTAATTTTCCTCCTATCCgaggggctgtg > 1:622283/1‑227 (MQ=255)
tgattcgttgcGCCGGCCACCCAACGAGAAAACGTTCTGATTCACCAGTGGCCCATCCCCATATGACCGCCACCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTaa < 2:757472/229‑1 (MQ=255)
tGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCTCGGCTaa > 2:361066/1‑239 (MQ=255)
tGATTTCTGCCGCTGACAACCCAACGAAAAACCTTTCTTATTTCCCGGGGCCCAATCCCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTaa < 2:231515/239‑1 (MQ=255)
ttttGTGTCCCTGGAAACCCAAGGGAAAAACGTTCTGTTTTACCAGTGGCCCATCCCCATAGCACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACa < 2:1043659/238‑1 (MQ=255)
aTTTCGGTCGCGGGCACCCCAAGGAAAAACCTTTCTGATTTCCCAGGGGCCCATCCCCATATGACCGCCCCCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACa < 2:150213/239‑1 (MQ=255)
cTGTCCATGGAACCCCAGCGAAAAACCGTTCTTATTTCCCAGGGCCCCATACCCATATGCCCGCCCCCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGc < 2:1116084/239‑1 (MQ=255)
gTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCCCCCGTAACTCACCTAACGACTGACGCAAATTTTCCATCTCTTTGGCGCCCGCGTTAATTTTGCTGCATTCCGGAGGGttggggggaaaacgggcat > 1:297130/1‑222 (MQ=255)
gTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCCCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTTGCGACCGCGTTACTTTTGCGACTATCCGGGGGGTTCCAGGCTAACAGGGCAt > 1:533641/1‑239 (MQ=255)
ccgcggccAACCAAACGAGAAACCGTTTGGATTACCCAGTGGCCCATCCCCATAGGACCGCCCCCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCAtt < 2:885165/232‑1 (MQ=255)
ccTGGCACCCCAACGAGAAACCTTTCTGATTTCCCAGTGCCCCATCCCCATAGGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGt < 2:292411/238‑1 (MQ=255)
gggcacccaaacagaaaaaCGTTCTGATTTCCAGGTGCCCCATACCCATAGGCCCGCCACCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTAt < 2:1017887/224‑1 (MQ=255)
aaCGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATACCTCGTTTCACCCGTAACTCATCTAACACCTGACGCAAATTCCCCACCCCTTTGGGGACCCCGTTATCTTTGCTGCTATCCGGGGGGTTCGCGGCTAATCGGGCATTGTATTCATAAc > 1:1053102/1‑237 (MQ=255)
aCGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCt > 2:590527/1‑85 (MQ=255)
ctcttgttcaCCAGGGGCCCATCCCCATAGGACCGCCACCCGCCCACCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGt < 2:270182/230‑1 (MQ=255)
tCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGtt > 2:1150180/1‑239 (MQ=255)
tACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGGATTCATAACGCTTCGTCACCAGTTGCTGTTg > 2:1167438/1‑239 (MQ=255)
ggTGCCCCATACCCATATGACCGCCACCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGt < 2:1291871/238‑1 (MQ=255)
gTGGCCCATACCCATATGACCGCCACCACCTCAGCAGCCGTAGCCCATGCCCATTCCGGCGCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCCAATTCTCCATCTCTTTTGCGACCGCGTTAATTTTGCTGTTATACGGTGCGTTCGCGGCTACCAGGGCTTTGTATTCATAACGCTTCGTCACCCATTTCTTTTGCAggg > 1:905002/1‑237 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATaa > 2:166434/1‑209 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGGATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTgc > 2:23296/1‑238 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAAACGGGCCTTGTTTTCATAACCCTTCGTCACCATTTCCGGTTgagggggg > 1:1164465/1‑232 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCAATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGCAACCAGTTGCTGTTGCACTgc > 2:583732/1‑238 (MQ=255)
ggCCCATACCCATAAGACCGCCACCACAGCAGCCGCCGTAGCCCATGCCCATTCCAGCTCCACGCGGTATACCCGCTTCAGCCAACGCGATATCTCGTTTCACCCGCAACTCATCTAACGCCTGACGCACATTCTCCAACACTTATGCGAACGCCTTAAGTATGTTGCTACCCGACGGCTTCCCGGCTAACTGGGCACTGACTTCATAACGCTTCGTCAcaaataccccttaccacgc > 1:616498/1‑220 (MQ=255)
gCCCATCCCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTgcg < 2:1109617/238‑1 (MQ=255)
tacccataTGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGCGCTGCtt > 2:312687/1‑239 (MQ=255)
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GCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAA‑CTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGCGCTGCTT > NC_000913/4201046‑4201514
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
