Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,489,889 A→C 11.6% V59G (GTG→GGG)  yjgR ← DUF853 family protein with NTPase fold

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,489,8890AC11.6% 341.7 / 3.4 140V59G (GTG→GGG) yjgRDUF853 family protein with NTPase fold
Reads supporting (aligned to +/- strand):  ref base A (60/56);  new base C (6/15);  total (66/74)
Fisher's exact test for biased strand distribution p-value = 5.99e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 142 total aligned reads displayed.

AAGATGATATTCAGCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTA  >  NC_000913/4489652‑4490125
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                              
aaGATGATATTCAGCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑cac                                                                                                                                                                                                                                               >  2:1123157/1‑239 (MQ=255)
  attggttttcacccccccggATTTCCCATCCTTGAAGTTCAACCGTGCGGCCTGCAACCGGGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTGCCCGCCAAAGATATCCCCCCCCCCCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTCTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACAt                                                                                                                                                                                                                                             <  1:521842/220‑1 (MQ=255)
  attgatATTCAGCCCGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGACGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACAt                                                                                                                                                                                                                                             <  2:597515/237‑1 (MQ=255)
    tgatATTCAGGCCGCCAGATTGCACATCGTTGAGATTCAACCGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACAt                                                                                                                                                                                                                                             <  2:1005263/237‑1 (MQ=255)
    tgatATTCAGCCCGCCAGATTGCACATCGTTGGGATTCAACAGTCGGTCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACAt                                                                                                                                                                                                                                             <  2:387699/237‑1 (MQ=255)
    ggatATTCAGCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACAt                                                                                                                                                                                                                                             <  2:505758/236‑1 (MQ=255)
       tatTCAGCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATACTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCGGATCGCCTTT‑CACATCAGcc                                                                                                                                                                                                                                        >  2:56657/1‑239 (MQ=255)
       tagtCACCACGCCAGGTTGCATCTCGTTGGGATTCAAACGCCGGGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCCCCGGATGGCTTTTCTCGGCAAAGATTGCCCACACCACCCCCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGcc                                                                                                                                                                                                                                        <  1:730530/236‑1 (MQ=255)
            aGCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGCCAAACCGCCCTT‑CCCATCAGCCTTaa                                                                                                                                                                                                                                    >  2:1232204/1‑238 (MQ=255)
            aGCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAAACGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGCGCAGTTTTTCCGCCACCGTTCCTGCCTGCGCGCCGCCTGTCAGACCGCCTTT‑caaccccaccataa                                                                                                                                                                                                                                    >  1:72070/1‑226 (MQ=255)
             gCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACCCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGCCACCGTTCCTGCCCCCCTAACCCCGGCCAGATCGCCTTT‑CACACCAGCCATAAac                                                                                                                                                                                                                                  >  1:394536/1‑239 (MQ=255)
              cACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGCGCGGTTTTTCCGACCCCGTTCCTGCCTGCGGGACGCCGGCCAGATCGCCTTT‑CCCATCACCCAAAAac                                                                                                                                                                                                                                  >  1:866418/1‑238 (MQ=255)
              cACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCCCGACCCCGGTCAGATCGCCTTT‑CACATCAGCCATAAac                                                                                                                                                                                                                                  >  2:66134/1‑238 (MQ=255)
              cACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGACACCCGAACCGGAAGGCCATTCTCGCCAAAGACATCCCACACCACCACCGGA‑TCGGCATGCGGTTGCCACTCATTGACGCCGCTATTTTTAAGCCTTCCGAGCAGGTTTTCCGACACCGTTCCTTCCTTCGCGCCGCCGTTAGAATCACCTTT‑CCCAACCACCATAAaca                                                                                                                                                                                                                                 >  1:511717/1‑239 (MQ=255)
                 gCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGCCACCGTTCCTGCCTGCGCGACCCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCg                                                                                                                                                                                                                              >  2:861028/1‑239 (MQ=255)
                   cAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATCTTTTTAAGCCTTGCGAGCAGTTTTTCCGACCCCGTTCCTGCCTGCCCGACCCCGGCCAGATCGCCTTT‑CACACCACCCAAAAACACCGGc                                                                                                                                                                                                                            >  1:1196842/1‑239 (MQ=255)
                      aTTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACAGGCA‑c                                                                                                                                                                                                                         >  2:732114/1‑238 (MQ=255)
                                    agaTTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGCCGCCGGCCAGACCGCCTTT‑CCCATCCGCCA‑AAACAACCGCACCGCCCATTTCCgcaaa                                                                                                                                                                                                          >  1:997167/1‑235 (MQ=255)
                                      aTTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAAt                                                                                                                                                                                                         <  2:1196842/238‑1 (MQ=255)
                                         cAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAAAACCGGCA‑CGCCGATTTCCGACAAGGAc                                                                                                                                                                                                      >  2:225159/1‑238 (MQ=255)
                                            ccgcggagcctgaaagaggcgCCCCGAATCCGAACCCGCCGCCCGCACCGGGTGGCGTTTCTCGCGAAAGATTACCCACACACCCCCGGGG‑TTGACGTGCGGTTTCCAGTCATTGACACGGAAATTTTGAGCCCTTGAGGGAAGTTTTTCCAACTCAGTGCGTGCCTGCGGGACGCCGGTCAGATGGCCTTT‑AACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCg                                                                                                                                                                                                  <  1:801423/219‑1 (MQ=255)
                                               tCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCACAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCGGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGccc                                                                                                                                                                                               >  2:660251/1‑238 (MQ=255)
                                               tCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CCCCGATTTCCGACAATGACTCCGCCa                                                                                                                                                                                               >  2:729165/1‑239 (MQ=255)
                                                cGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCGTTTCTCGCCAAAGATAGCCAACACCACCACCGGC‑TTGGCATGCGGTTTCCAGTCATTTACCCCGATACTTTTCAACCTTGCGACCAGGTTTTCCGACACCGTTCCTCCCTTCCCGACCCCTGCCCAATCGCCTTT‑CCCACCACCCCTAAACACCCACC‑CCCCGACTTCCAACAACGACccccccgg                                                                                                                                                                                              >  1:454177/1‑237 (MQ=255)
                                                        cAACAGGGGCCCCAGATCCGAAACCGTCGCCCTCGCCGGATGGCTTTTCGCGCCAGAAGTATCCAACCCCACCACGTGT‑TTGGCAAGGCGTGGCCAGTCATTGACGGCGATATTTTTAACCCTGGCGGGCAGTTTTCCCGACTCCGTTCCTGCCTGCGTGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCa                                                                                                                                                                                      <  1:389066/239‑1 (MQ=255)
                                                             gcgcCCCCGGAACCGAAACCGCCCCCCGCCCCGAGTGGCCTTTCGCCCCAAAAGTATCCCACCCCACCTCCGTG‑TGGGCTGGCGGTTGCCAGGCATTGACTCCGATATTTTTAAGCCTTGCGAGCATTTTGTCCGCCCCCGTTCCGGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CCCATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTa                                                                                                                                                                                 <  1:1042743/239‑1 (MQ=255)
                                                               ggCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTa                                                                                                                                                                                 <  2:428198/237‑1 (MQ=255)
                                                                   ccagtaccGAAACCGGCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGtt                                                                                                                                                                           <  2:789893/233‑1 (MQ=255)
                                                                                 gTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGt                                                                                                                                                             >  2:540231/1‑239 (MQ=255)
                                                                                  tcccccGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCAATGACGCCGATATTTTTCAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGCCGCCGGTCAGATCGCCTTT‑CACATCAGCCATAACCACCGGCA‑CGCCGAGTTCCGCCCACGACTCGACCACCTTTTCCACGCTAACGGCTTTACCCGTCCCCGt                                                                                                                                                             >  1:848378/4‑238 (MQ=255)
                                                                                      cccccccGGGTGGCCTTTTTCTCCAAATTGACCCCACACCA‑CACCAGAGGTGGCTCGCGGTTGCCATTTATTGACGCCGATATTTTGAAGCTTTGCGTGCTGTTTTCCCAACACCGTGCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTgcgc                                                                                                                                                        <  1:156277/234‑1 (MQ=255)
                                                                                       cGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGcc                                                                                                                                                       >  2:1179883/1‑239 (MQ=255)
                                                                                          aCCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGCAC‑CCCCCATTCCCGCCAATGAATCAGCCAGCTTTTGCACCCTAACGGTTTCTCCAGACCCCGtgccccgcga                                                                                                                                                    >  1:94483/1‑230 (MQ=255)
                                                                                              gATGGCCTTTCTCGCCAAAGATTACCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAAt                                                                                                                                                 <  2:242019/238‑1 (MQ=255)
                                                                                                tGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCa                                                                                                                                               >  2:1015010/1‑238 (MQ=255)
                                                                                                    ttttccgccaagagtttccccACACC‑CCCGCGGT‑TTGGCGTTGGGTTGCCCGTCATGGAGCCCTATTTTTTAAACCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGGGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCAt                                                                                                                                         <  1:368436/221‑1 (MQ=255)
                                                                                                    ccttatcGCCAAAAATACCCCCCACCACCCCCTGG‑TTGGCAATAGGTGTCCAGTATGTGACGCCGATATTTTTGAGCCTTGCGAGCAGTTTTCCCGACACCTATCCGGCCTCCGCGGCCCCGTTCAGCTCGCCTTT‑TCCATCAGCCATAAACTCCGGCG‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTATCGGTTTTACCCGTCCCCTTTGCGCCGGTAATCAGCCCa                                                                                                                                          <  1:796556/234‑1 (MQ=255)
                                                                                                    cTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCACCCCa                                                                                                                                          >  2:1304206/1‑239 (MQ=255)
                                                                                                     tttCCCGCCAAAGATACCCCACACCCCCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCAt                                                                                                                                         <  2:866418/239‑1 (MQ=255)
                                                                                                          ccgcaaacatccccaccacccccacCTGA‑TTGGCTTGTGTTTGCCCGCACTTGGCGCCGATTGTTTTAAGCCTGGCGAGCAGTTTTTCCAACACCGTTCCTGCCTGCGCGACGCCGGTCACATCGCTTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACCATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACgg                                                                                                                                    <  1:180973/223‑1 (MQ=255)
                                                                                                             cAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGATTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGtt                                                                                                                                  >  2:1095588/1‑238 (MQ=255)
                                                                                                                      accACACCACCACCGGA‑TTGGCATGAGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGAGACGCAGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGAC‑CGCCGATTTCCGAAAATGAGTCCGCCAGTTTTTGCAGCGAAACGGTGTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGGAGGCCATTccc                                                                                                                        >  1:336454/2‑239 (MQ=255)
                                                                                                                          caccaccacCGGA‑TTAGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGGCACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CTCCGATTTCCGACAATGACTCCGCCAGTTTTTGTAGCGTAACGGTCTCACCCTTCCCCTGTGCGCCGGTAACCAGCCCATAACGGATAGCCATACCCggac                                                                                                                    >  1:122899/1‑237 (MQ=255)
                                                                                                                            ccaccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGa                                                                                                                                       >  2:465963/1‑218 (MQ=255)
                                                                                                                            ccaccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGt                                                                                                                  <  2:1058190/239‑1 (MQ=255)
                                                                                                                            ccaccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGt                                                                                                                  >  2:228908/1‑239 (MQ=255)
                                                                                                                            ccaccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCACCCCATGACGGTTAGCCATTCCCGCCAGt                                                                                                                  >  2:546539/1‑239 (MQ=255)
                                                                                                                               ccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAACCACCGGCA‑CGCCGATTTCCGACAATGACTCCCCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGCAATCAGCCCCTGAAGGTTAGCCATACCCGGCAGCaaa                                                                                                               >  1:470509/1‑239 (MQ=255)
                                                                                                                               ccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCa                                                                                                                                                                                      >  1:964624/1‑168 (MQ=255)
                                                                                                                               ccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCa                                                                                                                                                                                      <  2:964624/168‑1 (MQ=255)
                                                                                                                               ccaccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCCCCGGCATTCAGCCCCTCACGGTTAGCCTTTCCCgccggcaaa                                                                                                               >  1:810823/1‑231 (MQ=255)
                                                                                                                                caccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGTCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCa                                                                                                                                                                                                                                       <  1:522620/119‑1 (MQ=255)
                                                                                                                                caccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTTCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAACCACCGGCA‑CGCCGCTTTCCGACAATGACTCCGCCAGTTTTTGCACCGTAACGGCTTTACCCGTCCCCGTTTCGCCGGTAATCAGCACCTGACGGTTAGCCCTTCCCCGCAGAaaaa                                                                                                              >  1:435298/1‑239 (MQ=255)
                                                                                                                                caccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTCACCGTCCCCCTTGCGCCGGTAATCAGCCCAGGACGGTTAGCCATTCCCGCCAGTacaa                                                                                                              >  2:684516/1‑239 (MQ=255)
                                                                                                                                caccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGa                                                                                                                                       >  2:975376/1‑214 (MQ=255)
                                                                                                                                  ccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGTGCGACGCCGGGCAGATCGCCTTT‑CACATCAGCCATAAACACCGTCA‑CGCCGATTTCCGCCAATGACACGGCAAGATTCTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGGAAACAACCCATGCGGGTTGGCAATTCCCGGcgcgaaaaca                                                                                                            >  1:1043655/1‑230 (MQ=255)
                                                                                                                                  ccGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTCAAAAc                                                                                                            >  2:285544/1‑239 (MQ=255)
                                                                                                                                     gA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACCCCGCCACTTTTGTCCGCGTAACGTGTTTACCCGTCCCCATTTCGCCGGGAATAAGCCCATGACGGTTAGCCATCCCCACCAGTaaaacaaat                                                                                                         >  1:131462/1‑234 (MQ=255)
                                                                                                                                           gCATGCGGTTGCCAGTCATTGACGCCGATATTTTTCAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGGTTTCCGACACTGACTCCGCCAGATTTTGCAGCGTAACGGTTTTACCCTTCCCCGTTGTGCCGGACATCAGCCAATGACGGTAAGCCATTACCGGCAGTAAAAACAGtacagg                                                                                                    >  1:487416/1‑234 (MQ=255)
                                                                                                                                           gCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACAt                                                                                                                                                                                                                                             <  1:1276302/103‑1 (MQ=255)
                                                                                                                                           gCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCtgt                                                                                                    >  2:163170/1‑239 (MQ=255)
                                                                                                                                              gtgggTTGCCAGTCATTGACGCCGATATTTTTAAGCCGTGCGAGCAG‑TTTTCCGACCCCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑cc                                                                                               <  2:992159/236‑1 (MQ=255)
                                                                                                                                                cGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGGAATCAGCCCCTGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGGGT‑CCg                                                                                              >  2:481883/1‑239 (MQ=255)
                                                                                                                                                      cccgTCTTTGCCTCCTATATCTTTAATCCTTGCGCGCGGTTTCTCCGACCCCGTCCCTGCCTGCGCCACGCCGGACCGATCGCCTTT‑CACATCCGCCATAAGCGCCGGCA‑CGCCGATTACCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCTGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGc                                                                                        <  1:481883/236‑1 (MQ=255)
                                                                                                                                                        ccggcttGACGCCGGTATTTGTAAGCCTTGCGTGCATTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGc                                                                                        <  2:501776/232‑1 (MQ=255)
                                                                                                                                                        aGTCATTGGCGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCg                                                                                       <  2:1173204/238‑1 (MQ=255)
                                                                                                                                                         tgatttGACGCCGATAGTTTTAAGCCTGGCGAGCCGTTTTTCCGGCACCGTTCCTGCCTGCGCGTCGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCggg                                                                                     <  2:1184724/235‑1 (MQ=255)
                                                                                                                                                                      atatTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGATCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATCAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGATTTTGCAGCGTAACGGTTTTACCCGGCCCCGTTGCGCCGGGAATCAGCCCATGACGGTTAGCCATTCCTGGCAGTATAAACAGTTTTTGGG‑CCGGGGGTCGGGCCATTacccggtg                                                                        >  1:501776/1‑232 (MQ=255)
                                                                                                                                                                        ttttttAAGCCTTGCGAGCAGTTTTTCCGACCCCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGtt                                                                      <  2:810823/238‑1 (MQ=255)
                                                                                                                                                                        tttttcagcccttggcacccttttttCCGGCCCCTCCCCTGCCTGCGCGCCCGCGGTCAGATCCCCTTT‑CCCACCCGCCATAAACCCGGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGtt                                                                      <  1:861028/218‑1 (MQ=255)
                                                                                                                                                                        atttgaaaGCCTTGACAGCATGTTTTCGCCCACCGTTCCTTCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGtt                                                                      <  2:568992/233‑1 (MQ=255)
                                                                                                                                                                        atTTTTAAGCCCTGGCAGCAGTTTTTCCGACCCCGGTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CCCATCAGCCATAAACCCCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGtt                                                                      <  2:294562/239‑1 (MQ=255)
                                                                                                                                                                        atTTTTAACCCTTGGGAGCATTTTTCCCGACCCCGTCCCTGCCCGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGGCTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGtt                                                                      <  2:417377/239‑1 (MQ=255)
                                                                                                                                                                                 ccTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATga                                                             >  2:1306684/1‑239 (MQ=255)
                                                                                                                                                                                  tttGCGGGCGTTTTTTCCGCCCCCGTTCCTCCCTGGGCGACGCCGGTCAGATCGCCTTT‑CACACCCGCCATAAACACCGGCC‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATgag                                                            <  1:969483/238‑1 (MQ=255)
                                                                                                                                                                                    tGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCa                                                                                                                                               <  2:345515/155‑1 (MQ=255)
                                                                                                                                                                                    tGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCa                                                                                                                                               >  1:345515/1‑155 (MQ=255)
                                                                                                                                                                                       cctccttttttCCCACCCCGTCCCCGCCTGCGCGGCCCCGGTACGACCCCCTTT‑CCCATCCGCCATAAACACCGGGC‑CGCCGATTCCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTGTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATAtc                                                       <  1:228908/233‑1 (MQ=255)
                                                                                                                                                                                                ttccccccctgTTCCTGCCTGCGCCACGCCGGTAAGCTCCCCTTT‑CCCACCAGCCATAACCCCCGGAC‑CGCCGTTTTCCGACAATGGCTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGttt                                              <  1:789147/229‑1 (MQ=255)
                                                                                                                                                                                                   ctacccctttCCTCCCGGCCGGACCCCGGTCATATCGCCTTT‑CCCATCAGCCATAAACCCCGGCC‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcct                                           <  2:487416/231‑1 (MQ=255)
                                                                                                                                                                                                      ccccGTTCCTGGCGTCGGGTCGCCGTTCACACCGGCTTA‑CACATCAGCCTTAAACAGCGGCG‑CGCGGTGTTTCTAAATGGCCTCAACCAGGTTTTGCAGCGCACCGGTTTGGCCCGGCCTCGTTCGGTCGGTAATCAGGCGATGGCGGTTAGCCATGCCCTGGAGTAAAAACAGTTCTGTGT‑CGGGTGTGAGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcatgcc                                        <  1:267574/237‑1 (MQ=255)
                                                                                                                                                                                                      ccccGTTCCTCCCTCCGAGACGCCGGTCAGTACCCCTTT‑CCAAACGCCCATAAACCCCGGCA‑CGCCTATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgcc                                        <  1:1211159/237‑1 (MQ=255)
                                                                                                                                                                                                       tctgtcccggcctccGCCACGCCGGTC‑GGTCCCCTTTGCCCTCCACCCATAAACCCCGCCA‑CGGCGTCTTCCGACAATGACCCCGCCAGTTTTTTCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCTGGTAATCAGCCCATGACGGTTAGCCATGCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgcct                                       <  1:1123335/230‑1 (MQ=255)
                                                                                                                                                                                                       acCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACCGTTCTGTGT‑CCGGCGTGCGGGCAATTAACCGGGGTTCACCCATGAGGAATCCTCCAGTTTcctg                                          >  2:789147/1‑236 (MQ=255)
                                                                                                                                                                                                        ccctttctgccagcGCGCCCCCGGCCCACTCACCTTT‑CTCACCGTCCTTAAACACCGGCA‑CGCCGATTTCCGACAATGCCTCCGCCAGTTTTCGCAGCGTAACGGTTTTACCCGACCCCGTTGAGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgcctg                                      <  1:244944/233‑1 (MQ=255)
                                                                                                                                                                                                         cGTTCCCGCCTGCGCGCCCCCGGTCCATTCCCCTTT‑CCCACCGACCATAACCCCCGGCC‑GGCCATTTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTgg                                     <  1:724431/239‑1 (MQ=255)
                                                                                                                                                                                                           ttCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAAAAGGGGCTCACCCATGAGATATCCTCCCGTTTCCCGCCAGGaa                                   >  1:1158661/1‑238 (MQ=255)
                                                                                                                                                                                                                gcctgcGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCATGGAGTATAg                              >  2:843207/1‑239 (MQ=255)
                                                                                                                                                                                                                gcctgcGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGGGGGGGAAATTAACAGGGGTTAACACATGAGATATCCCCCAGTTTCCTCCCCGGAggaaag                              >  1:83447/1‑234 (MQ=255)
                                                                                                                                                                                                                   tgcGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGGGATATCCTCCAGTTTCCTGCCTGGAGAATAggaa                           >  2:789332/1‑237 (MQ=255)
                                                                                                                                                                                                                             cGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACGCCGACAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCa                 <  2:94483/239‑1 (MQ=255)
                                                                                                                                                                                                                             cGGTCAGAGCGCCTTT‑CACATCAGACATAACCACCGGCA‑CGCCGATTACCGACAATGACGCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCa                 <  2:454177/239‑1 (MQ=255)
                                                                                                                                                                                                                             cGGTCAGACACCCTTC‑CACATACGCCATAAACCCCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTGGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCa                 <  2:38434/239‑1 (MQ=255)
                                                                                                                                                                                                                              ggTAAGATCGCCTTT‑CCCATCAGCCATAAACCCCGGCA‑CGCCGCTTCCCGCCAATGGCCCCGCCAGTTTTTGCAGGGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCaa                <  1:163170/239‑1 (MQ=255)
                                                                                                                                                                                                                                    aTCCCCTTT‑CACATCAGCCATAAACCCCGGCC‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaa          <  2:481962/239‑1 (MQ=255)
                                                                                                                                                                                                                                     tccccTTT‑CCCCTCAGCCCTAACCCCCGGCC‑CGCCGGTTTCCGACAATGCCCCCGCCATTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAAt         <  1:66134/236‑1 (MQ=255)
                                                                                                                                                                                                                                     tCGCCTTT‑CACCTCAGCCATAACCACCGGCA‑CGCCGATTTCCGACAAGGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAAt         <  2:131462/239‑1 (MQ=255)
                                                                                                                                                                                                                                      ccctttt‑CCCATCGTCCTTAACCCCCGGCC‑GGCCGATTTCCGACAATGCCTCCGGCAGTTTTGGCAGCGTAACGGTTTTCCCCGTCCCCGTTGAGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAAt         <  1:1304206/234‑1 (MQ=255)
                                                                                                                                                                                                                                         cTTT‑CCCATGAACCATAAACCCCGGCA‑AGCCGATTTCCGACAATGAATCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACgt     <  2:1023721/239‑1 (MQ=255)
                                                                                                                                                                                                                                            t‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGGTGGCCATTCCCGGCAGTAAAAACAGTTCT‑TGTGCCGGCGTGCCGGCAATTAACCGGGGTTCACTCATGGGATATCCTCCCGTTTCCTGCCTGGAGAATGGGCAACGGCCGGCAAagaacaacaggtaa  >  1:1020667/1‑228 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                              
AAGATGATATTCAGCACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGA‑TTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTT‑CACATCAGCCATAAACACCGGCA‑CGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGTAACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGT‑CCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTA  >  NC_000913/4489652‑4490125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A