Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F27 I0 R1 83 86.1 2053078 89.1% 1829292 215.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,489,904 A→C 13.5% V54G (GTG→GGG)  yjgR ← DUF853 family protein with NTPase fold

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,489,9040AC13.5% 236.0 / 4.1 96V54G (GTG→GGG) yjgRDUF853 family protein with NTPase fold
Reads supporting (aligned to +/- strand):  ref base A (43/33);  new base C (2/17);  total (45/51)
Fisher's exact test for biased strand distribution p-value = 2.67e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAAT  >  NC_000913/4489666‑4490138
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
cACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCCGTCATTGACGCCGATATTTTTAAGCCTTGCGGGCAGTTTTTCCGACCCCTTTCCTGCCTGCGCCACCCCGGGACGATCGCCTTTCCCATCACCCA‑AAaca                                                                                                                                                                                                                                             >  1:872618/1‑238 (MQ=255)
        aTTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACAGGCAc                                                                                                                                                                                                                                      >  2:751369/1‑238 (MQ=255)
         ttGCACATCGTTGAAATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCAc                                                                                                                                                                                                                                      <  2:618401/237‑1 (MQ=255)
                 tgtttggtttcccacgtgctGCCAGCAACGGGCGCCCCAGATCCGAACCCGACGCCCGCCCCGGATGGCCTTCCTCGCCAAAGATATCCCACACTCCCACCGGATTGGCATGCGGTTGCCATTCATTGACGCCGATTTTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCGCATCAGCCATAAACACCGGCACGCCGATTTcc                                                                                                                                                                                                                            <  1:507745/220‑1 (MQ=255)
                 cGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTcc                                                                                                                                                                                                                            >  1:246390/1‑239 (MQ=255)
                     ggaactCAACAGTCGTGCCAGAAAAAGCGGCCCAAGATCCGAAACCGTCGCCCGCCCCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACa                                                                                                                                                                                                                        <  2:897687/234‑1 (MQ=255)
                             aCAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTc                                                                                                                                                                                                                 >  2:184149/1‑238 (MQ=255)
                                 tCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAAAACCGGCACGCCGATTTCCGACAATTAATCTGCCa                                                                                                                                                                                                            >  2:109041/1‑239 (MQ=255)
                                               cgcgCCCCAGGCCCGAACCCGGCCCCCGCACCCGATGGCCTTTCTCGCCAAAGATATCCCACACCCCCCCCGGATTGGCATGGGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACAGCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑a                                                                                                                                                                                             <  1:671535/236‑1 (MQ=255)
                                               cccgcccccaacccGAAACCCGCCCCCGCCCCGGAGGGCCTTCCCCCCCAAAGATCTCCCCCACCTCCACCGGATTGGCATGCGGTTGCCAGTCATTGCCGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTCCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACAACAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑a                                                                                                                                                                                             <  1:975029/227‑1 (MQ=255)
                                                cgcccccATATCCGAACCCCGCGCCCGCCCCGGGTGGCCTTTCCACCCAAAGATCTCCCACACCCCCACCGGATTGGCAGGCGGTTGCCAGTTCTTGACGCCGATTGTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑aa                                                                                                                                                                                            <  1:326068/236‑1 (MQ=255)
                                                     ccAGGTCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACCCCCCCCCCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGtt                                                                                                                                                                                       <  2:337099/239‑1 (MQ=255)
                                                                    tCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACACTGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGt                                                                                                                                                                         >  2:721421/1‑238 (MQ=255)
                                                                    tCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCACCCCTAAACACCGCCCCCCCGGTTTCCGCCAATGCCTCCGCCAGTTTTTGCAGCGA‑AACGGTTTTACCCGTCCCCCtt                                                                                                                                                                        >  1:497344/1‑239 (MQ=255)
                                                                    tCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTACTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACACCGCCAGTTTTTGCAACGT‑AACGGCTTTACCCGTCCCCGt                                                                                                                                                                         >  2:228852/1‑238 (MQ=255)
                                                                    tCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGATGCCAATCCTTGACGCCGAAATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCCGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATACACACAGGCACGCCGCTTTCAGACAATGACTCCGCCAGGATTAGACGCGG‑AACGGTTTTACCAGTCCCCGta                                                                                                                                                                        >  1:418298/1‑238 (MQ=255)
                                                                     cGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACCGTTTTACCCGTCCCCGtt                                                                                                                                                                        >  2:919609/1‑238 (MQ=255)
                                                                        ccccccgcggtGGCCTTTATGCCCAAAGTTCTCCCCACCCCCCCCCGGGTTGGCATGCGGTTGCCAGTCATTGCCGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACCCCGTTCCTGCCTGCGGGACGCCGGTCAGATCGACTTTCACATCAGCCATAAACACTGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTgcgc                                                                                                                                                                    <  1:401772/229‑1 (MQ=255)
                                                                        cccccccgcgtcgCCTGTCTCCCCAAAGGTATCCCACCCCACCCCCGGATTGGCACGGGGTTGCCCGTCATTGACGCCGATATTTTTAAGCCTTGCTAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTgcgc                                                                                                                                                                    <  1:707979/227‑1 (MQ=255)
                                                                               gggttgcttttCTCCCCAAAAATATCCCACTCCACCCCCGGTTGGGCTGGCGGTTGCCAGTTATTGACGCCGTTATTTTTAAGCCTTGCGAGCAGTTTTTCCGACGCCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAAt                                                                                                                                                             <  1:741249/231‑1 (MQ=255)
                                                                               ggATGGCCTTTCCCGCCAAAGATTCCCCACACCCCCCCCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAAt                                                                                                                                                             <  2:53785/239‑1 (MQ=255)
                                                                                gATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTGAGATCGCCTTTCAAATCAGCCATAAACCCCGGCACCCCGCTTTCCGCCAAT‑ACCCCCCCCATTTTTGCAACCTAAACGGCTTTACCCGTCCCCTTTCCCCCGGAAAta                                                                                                                                                            >  1:569226/1‑238 (MQ=255)
                                                                                  tGGCCTTTCTCGCCAAAGATATCCCACTCCACCACCGGATTGGCATGCGGTTTGCAGTCATTGGCGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCa                                                                                                                                                           <  2:724897/238‑1 (MQ=255)
                                                                                        ttCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCCTTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTTCGCGACGCCGGTCAGATCGCCTTTCCCATCAGCCATAAACCCCGGCCCGCCGATTTCCGCCACTGACTCCGCCAGTTTTTGCAGCGA‑AACGCTTTTCCCCGTCCCCGTTTCGCCGGaaacaaggacaa                                                                                                                                                     >  1:824472/1‑229 (MQ=255)
                                                                                        ttCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTCTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGCCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCACCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCACCCCAt                                                                                                                                                     >  2:925951/1‑238 (MQ=255)
                                                                                           ccgacAAAGATACCCCCCCCCCCCACCGGATTGGCATGCGGTTGCCAGTCATTGGCGCAGATATTGTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGC‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACg                                                                                                                                                 <  2:955999/235‑1 (MQ=255)
                                                                                               cAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCa                                                                                                                                                                                                   >  2:160719/1‑186 (MQ=255)
                                                                                               cAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCAAGTTTTTGCAGCGT‑AACGGCTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTa                                                                                                                                             >  2:848995/1‑239 (MQ=255)
                                                                                                   gATATCCCACCCCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACCCCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACg                                                                                                                                                 <  2:355220/231‑1 (MQ=255)
                                                                                                           ccaccctccacGGGTTGGCATGCTGTTCCCAGTCATTCAGCCCGTACTTCTTAAGCCTGGCGGGCAGTTTTTCCGACCCCGTTCCGTCCTGCGGGCCGCCGGTCAGATCGCCTGTCCCATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGGTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGc                                                                                                                                 <  1:12817/229‑1 (MQ=255)
                                                                                                             accaccaccGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCCTTCCCGGCAg                                                                                                                               >  1:94503/1‑239 (MQ=255)
                                                                                                             accaccaccGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGGAATACGCCCATGACGGGTAGCCATTCCCgtt                                                                                                                                 >  1:355220/1‑235 (MQ=255)
                                                                                                              ccaccaccGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATCAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑ACCGGTTTTACCCGCCCCCGTTGCCCCGCTAATCAGCCCATAACGGTTACCCATCCCCGACAga                                                                                                                              >  1:966757/1‑238 (MQ=255)
                                                                                                              ccaccaccGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGt                                                                                                                              <  2:246390/239‑1 (MQ=255)
                                                                                                                  caccGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTaaaa                                                                                                                          >  2:368809/1‑239 (MQ=255)
                                                                                                                  caccGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCACCGT‑AACGGTTTTACCCGTCCCCGTTGGCCCGGTAATCAGCCCATGACGGTTAGCCCTTCCCGGCAGTaaaa                                                                                                                          >  2:475053/1‑239 (MQ=255)
                                                                                                                   agggacagggCATGCGGTTGCCAGTCATTGACCCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTaaaaa                                                                                                                         <  2:552311/231‑1 (MQ=255)
                                                                                                                   accGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATTTTTTTAAGCCTGGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTaaaaa                                                                                                                         <  2:872618/239‑1 (MQ=255)
                                                                                                                   accGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCCACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTaaaaa                                                                                                                         <  2:607972/239‑1 (MQ=255)
                                                                                                                       gATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCCTAAACACCGGCACGCCGATTTCCGACAAAGACTCCGCCGGTGTTTGAAGCGT‑AACGGTTTTACCCGACCCCGTTGCGCCGGTAATCAGCCCATGAGAGTAAGCCATTACCAGAAGAAAAAAAAga                                                                                                                     >  1:318503/1‑238 (MQ=255)
                                                                                                                       gATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGCTTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTAACCGTCCCCGTTGCGCCGGAAATACGCCCATGACGGTTGGCCCTTCCCGCCAGTaaaaaaaat                                                                                                                     >  1:286779/1‑235 (MQ=255)
                                                                                                                         ttGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCCGTAAAAACAGtta                                                                                                                   >  2:341737/1‑238 (MQ=255)
                                                                                                                         ttGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACCGt                                                                                                                     >  2:781394/1‑237 (MQ=255)
                                                                                                                         ttGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGt                                                                                                                     >  2:63275/1‑237 (MQ=255)
                                                                                                                         ttGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAG‑TTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGAc                                                                                                                                                  >  2:461839/1‑207 (MQ=255)
                                                                                                                            gCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCggt                                                                                                                >  2:454451/1‑239 (MQ=255)
                                                                                                                                 cGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGCCAGTAAAAACAGTTCTGTGTcc                                                                                                            >  2:11154/1‑238 (MQ=255)
                                                                                                                                      gCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGt                                                                                                       >  2:530450/1‑238 (MQ=255)
                                                                                                                                      gCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTg                                                                                                      >  2:662529/1‑239 (MQ=255)
                                                                                                                                      gCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCCCCGGTAATCAGCCCATGACGGGTAGACCTTCCCCGCCGTAAAAAAAGTTCTGGGTcggccaat                                                                                                      >  1:552311/1‑232 (MQ=255)
                                                                                                                                        cattCATTTCCGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGCCGCCTGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGc                                                                                                     <  2:418298/235‑1 (MQ=255)
                                                                                                                                         cttcgttGGCGCCTATTTTTTTACTCCTTGCAGGCAGTTTTTCCGGTCCCTTTCCGGCCTGCGCGCCGCCGGTCAGATCGCCTTTCACATCAGCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGGTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCgg                                                                                                   <  1:25574/234‑1 (MQ=255)
                                                                                                                                         aGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGc                                                                                                     <  2:750437/237‑1 (MQ=255)
                                                                                                                                          gtccgttgccccgttttttttAAGCCTTGGGAGCAGTTTTCCCGAAACCGTTCCTGCCTGCGCGAGGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCggg                                                                                                  <  1:11154/223‑1 (MQ=255)
                                                                                                                                                   gCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCTTTGCGCCGGAAATCAGCCCAGGACGGTTAGCCATTCCCGCCAGTAAAAACAGTTCTTGGTCCGGCGGGCGGGCAATAAAc                                                                                          >  1:750437/1‑238 (MQ=255)
                                                                                                                                                      gttttttatAAGCCTTGCGGGCGGTTTGTCCTACCCCTTTCCGGCCTGCGGGACGGCGGTAATATCGCATGTCACAGCGGCCAGAAACACCGGCAGGCCGATTGCCGACAATGGCTCCGCAAGTTGTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCATCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACACTTCTCTGTCCCGCGTGCGGTCAATTTACAggc                                                                                      <  1:228852/235‑2 (MQ=255)
                                                                                                                                                      gATATTTTTAAGCCTTTCGAGCAGTTTTTCCGACCCCGTTCCTGCCTGCGCGACGCCGGTCAGATCCACTTTCGCATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCTGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAggg                                                                                      <  2:561863/239‑1 (MQ=255)
                                                                                                                                                         ttttttAAGCCTTGCGGGCATTTTTCCCCCCCCCTTTCCTGCCCGCGGGACGGCGGTCAGATCGCCTTTCCCATCAGGCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGGTGTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGtt                                                                                   <  1:662529/238‑1 (MQ=255)
                                                                                                                                                         atTTTTAAGCCTTGCGAGCATTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGtt                                                                                   <  2:33165/239‑1 (MQ=255)
                                                                                                                                                           ttttagccccggCGACCAGTTTTTCCGACCCCGTTCCCTCCTGCGCGGCGCCGGTCAGATCGCCTTTCCCATCAGCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCa                                                                                 <  1:653212/228‑1 (MQ=255)
                                                                                                                                                           tttgtttccttgtcgtcattttttCCCACCCCCTCCCTGCCCGTGGTCCGCCGGTTATTCCGCCTTTCTCATTGGCTCAAACCGCCGGCCCGCCGATTTCCAGCAATGACCCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCa                                                                                 <  1:496833/220‑1 (MQ=255)
                                                                                                                                                             ttAAGCCTTGTGTCCGTTTTTCCCGACCCCGTTCCGTCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAACCACCGGCACGCCGTTTTCCGACAAGGAGTCCGCCAGGTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACt                                                                               <  1:184149/239‑1 (MQ=255)
                                                                                                                                                               aaGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACATGGGTTCACTCa                                                                             >  2:946431/1‑239 (MQ=255)
                                                                                                                                                                    ttGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATgaga                                                                        >  2:653212/1‑239 (MQ=255)
                                                                                                                                                                    ttGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGC‑AGTAACAGGGGTTACCTCATGGGat                                                                       >  2:391108/1‑239 (MQ=255)
                                                                                                                                                                     tGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGGACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGGCCGGAGTGCGGGCAAATAAAAgggggtacaccatgaaag                                                                       >  1:547452/1‑225 (MQ=255)
                                                                                                                                                                     tGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACa                                                                                                                       >  2:872501/1‑191 (MQ=255)
                                                                                                                                                                     tGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACa                                                                                                                       <  1:872501/191‑1 (MQ=255)
                                                                                                                                                                      ggagatgggtaaaagagacaggTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGata                                                                      <  2:564361/218‑1 (MQ=255)
                                                                                                                                                                       cGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCGGTAAAAACCGTTCTGGTTCCGGCGTGGGGGCAATAAAAAAGGGttaaaccaaggggaa                                                                      >  1:513041/1‑225 (MQ=255)
                                                                                                                                                                                   ccGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAg                                                                                                                                                          <  1:280627/142‑1 (MQ=255)
                                                                                                                                                                                   ccGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAg                                                                                                                                                          >  2:280627/1‑142 (MQ=255)
                                                                                                                                                                                      ccccctttctcccccgcgcgcTGCCGGTCTGTTCGTTTTTCACATCAGCCATAACCACCGGCACGGCTATTTCCGGCAATGACTCCGCCAGTTTTTGCAGCGT‑ATCGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCAGGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgc                                                      <  1:401835/224‑1 (MQ=255)
                                                                                                                                                                                      cccccgtcccgccctgcGGGCCGCCGGTCAGCTCCCCTTTCACAACCGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgc                                                      <  1:946431/227‑1 (MQ=255)
                                                                                                                                                                                        cgggttcccgcgccggcgcCGCCCGGCAGATCGCCTTTCACATCAGCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGGCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgcc                                                     <  1:996422/223‑1 (MQ=255)
                                                                                                                                                                                        ccctttccatgcggcgcGACGCCGGTCAGACCGCCTTTCACATCGGCCATAAACCCCGGCACGCCGATTTCCGAAAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgcct                                                    <  2:318503/226‑1 (MQ=255)
                                                                                                                                                                                         ccGTTCCTGCCTGCGCGACGCCGGTCAGTGCGCCTTTCACATCAGCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTcctgcctg                                                   <  2:497344/239‑1 (MQ=255)
                                                                                                                                                                                         ccGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAACCAGTTCTGTGTCCGGCGTGCGGGACATTAACAGGGGGTCACTCAAGAGATATCCTCCAGTTTcctgcctg                                                   >  1:907624/1‑239 (MQ=255)
                                                                                                                                                                                          cttccccgccggcGCGACGCGGGTCCGAGCGCCTTTCCCAGCAGCTAAAAAAACCGGCACGCTGTTTCCCGACAAAGACTCCGCAAGTTTTTGCAGCTT‑AACGGTTTACCCCGGCCCCGTTGCGCCGGTAATCAGCCCAGTACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTgg                                                  <  1:925951/232‑1 (MQ=255)
                                                                                                                                                                                            ttCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAg                                                >  1:838497/1‑239 (MQ=255)
                                                                                                                                                                                              cctgcctgCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGta                                              <  2:838497/239‑1 (MQ=255)
                                                                                                                                                                                                 gcctgcGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAg                                           >  2:438850/1‑239 (MQ=255)
                                                                                                                                                                                                    ggcgcGACGCCGGTCAGAACGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCa                                        <  2:887206/238‑1 (MQ=255)
                                                                                                                                                                                                      cgcgACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGCCGGTTAGCCATTCCCGGCAGACAAAACCGCTCTGTGTCCGGCGTGCGGGCAATTCACAGGGGTTCACCCCTGAGATATCCTCCAGTTTctttcctttaaaaaaatctaa                                      >  1:564361/1‑225 (MQ=255)
                                                                                                                                                                                                      cgcgACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGCGtatat                                           >  2:996422/1‑233 (MQ=255)
                                                                                                                                                                                                      cgcgACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCACCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAATTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTAACTCATGAGATATCCTCCAGTTTCCTGCCTGGGGAATAGGAAAc                                      >  1:414940/1‑239 (MQ=255)
                                                                                                                                                                                                                gtccaaTCCCCTTTCCCTCCACCCATTAACCCCGGCCCCCCGATTGCCGGCCATGACCCCGCCAGTTTTTGCCGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCaaa                            <  1:454451/234‑1 (MQ=255)
                                                                                                                                                                                                                 tcacctccccTTTCACACCATCCATAAACACCGGCACGCCGATTTCCGCCAATGACCCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCTGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCaaa                            <  1:781394/230‑1 (MQ=255)
                                                                                                                                                                                                                     ttCGCCTTCCCAATCATCACTAACCCCCGGCCCGCAGATTCCCGACACTTACTCCGCCAGTTTTTGCGGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCAGGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaa                       <  1:438850/238‑1 (MQ=255)
                                                                                                                                                                                                                      tccccttcccctccAGCCCTAATCCCCGTCACTCGGATTCCCGTAAATGACGCCGCCTGTTTTTGCCGCGT‑AACGGTTTTCCCCTTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAAt                      <  1:315849/226‑1 (MQ=255)
                                                                                                                                                                                                                      tccccttcaccacacgCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGGCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaa                       <  2:824472/223‑1 (MQ=255)
                                                                                                                                                                                                                      tCGCCTTTCAAATCAGCCATAAACCCCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaa                       <  2:286779/238‑1 (MQ=255)
                                                                                                                                                                                                                      gccccTTTCACATCCTCCCAAAACCCCGGCGCGCCGATTTCCGCCAATGACCACGCCTGTTTTTGCAGCGT‑AGCGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAAt                      <  1:341737/236‑1 (MQ=255)
                                                                                                                                                                                                                      cccccTTTCCCCTCGCCCCTAAACCCCGTCCCCCCTATTTCCGACAAGACCCCCGCCAGTTTTTGCAGCGT‑AACGGTTTTCCCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaa                       <  1:63275/235‑1 (MQ=255)
                                                                                                                                                                                                                        gCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTACAAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCACAGCCGGGCAAAGCAAATAc                    >  2:877210/1‑239 (MQ=255)
                                                                                                                                                                                                                                    cccctataaCCCCGGCCCGTCGTTTTCCGACAATGGTCCCGGCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAaga        <  1:368809/232‑1 (MQ=255)
                                                                                                                                                                                                                                          aaaCCCCGGCACGGCGATTTCCGACAAGGACGCCGACAGTTTTTGCAGCGT‑ATCGGTTTTGCCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAAt  <  2:246254/239‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
CACGCCAGATTGCACATCGTTGAGATTCAACAGTCGTGCCAGCAACAGCGGCCCCAGATCCGAAACCGTCGCCCGCACCGGATGGCCTTTCTCGCCAAAGATATCCCACACCACCACCGGATTGGCATGCGGTTGCCAGTCATTGACGCCGATATTTTTAAGCCTTGCGAGCAGTTTTTCCGACACCGTTCCTGCCTGCGCGACGCCGGTCAGATCGCCTTTCACATCAGCCATAAACACCGGCACGCCGATTTCCGACAATGACTCCGCCAGTTTTTGCAGCGT‑AACGGTTTTACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAAT  >  NC_000913/4489666‑4490138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A