Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
260 |
102.5 |
2178490 |
93.2% |
2030352 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
501,710 |
T→C |
16.0% |
E510G (GAG→GGG) |
ybaL ← |
inner membrane putative NAD(P)‑binding transporter |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 501,710 | 0 | T | C | 16.0%
| 190.3
/ 5.5
| 81 | E510G (GAG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| Reads supporting (aligned to +/- strand): ref base T (47/20); new base C (2/12); total (49/32) |
| Fisher's exact test for biased strand distribution p-value = 1.55e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCGGAATATCAGAGGCGAGCAATT > NC_000913/501472‑501935
|
tCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGTCGCGGGCAATAAtct > 1:427896/1‑239 (MQ=255)
tcGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGAtttt > 1:752506/1‑239 (MQ=255)
tcGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGGGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAACTCCACAATCCGGAtttt > 2:627716/1‑239 (MQ=255)
aTGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGc > 1:616363/1‑239 (MQ=255)
gcgcGTCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCccca > 2:240770/1‑238 (MQ=255)
tCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGGTTTTTCGCGCGGGCAGATGCCACAAtctc > 1:196135/1‑238 (MQ=255)
tttctcccTATATTTTTTTATTT‑TTTTACTCCCGCCCACCCCCCTTTCCCCCCCCCCCCCCCCCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCCCCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCAccc < 2:616363/233‑1 (MQ=255)
cctaattttttttATATTTTTCCCTCCGACACCCCCCTTCTCCCCCGCCCCCCCCC‑CCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCCCGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCAt < 1:209159/232‑1 (MQ=255)
cATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCCGATGCCACAATCTCACCCCCTTCATAAc > 1:739462/1‑238 (MQ=255)
cATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAAcc > 1:745391/1‑239 (MQ=255)
ttttCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTgg > 1:383900/1‑239 (MQ=255)
ttCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCCCCCGGGCAGATGCAACAATCTAACCCGCTTCATAACCGTTGGGa > 2:899230/1‑239 (MQ=255)
ttACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCCCAATCTCACCCGCTTCATaa > 1:720322/1‑222 (MQ=255)
ggCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAAcc > 1:837870/1‑216 (MQ=255)
ccttttccccctgcccccccccccccGCCGGTGGCGTTTCCAGCAGTTCCCGCATGGCTCGGGC‑GATTTCACGCT‑CCCCCATCACTACCGTATTCGCACCACGTTCGGTCATATACGCCATTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGca < 1:899230/216‑1 (MQ=255)
gTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAAtc > 1:225068/1‑189 (MQ=255)
tttACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACAt > 1:769593/1‑239 (MQ=255)
cccGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCCATAATCTCAATATCCGGATTTTTCGCTCGGGCAGATGCCACAATCTCACCCGCTTCATAACCCTTGGGAATCGTCAGGTACACCCATTTTGCACATTCCAg > 2:229335/1‑239 (MQ=255)
gTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCCGact > 1:236851/1‑237 (MQ=255)
gTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAAATg > 2:93062/1‑239 (MQ=255)
gccgGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTCGGAATCGTCAGGACCCGCCATTTTGCACATTCCAAATGCCCAAGttaccaaat > 2:628270/1‑232 (MQ=255)
tCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACACGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCCTTTTGCACATTCCAGATTCGCCAGTTGCATAATTTCttcgttcc > 1:207816/1‑237 (MQ=255)
ttttaaagaccagggTCCGGGC‑GATTTCCCGCC‑CCCCCATCACCACCTGATTGCCCCCACGTTCGGTGATATCCGCCACTTCATCGTCATAATGGGCGCGGGCAATAACCTCAAATTCCGGATTTTTCGCGCGGGAAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:928684/226‑1 (MQ=255)
tcattctccccagggtgggggC‑GTTTTCACCGT‑TGCCCATCAATACCCTATACGCCCCACGTTCGGTGATATACGCCTATTCACCGCCATAATGGGCGCGGGCAATAATCTCAATTCCCGGTTTTTTCGCGCGGGCAGAGGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:126555/221‑1 (MQ=255)
gctcttCCAGCCTGGCACGGGC‑AGTTGCCCGCTCCGCCCA‑CTCTTCCTGATTCGCCCCAAGTTCGGGCATATACGCCCCTTCATCGTAATAATGGGCGCGGGAAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:1013359/235‑1 (MQ=255)
gcatttcctggctGGTTCGGGC‑GATTTCCCGCC‑CCCCCCTCCCTCCCTTATTCGCCCCACGTTCGGTGATATACGCCCCTTTATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:156737/227‑1 (MQ=255)
gcattgccaccaTGGGCCGGGG‑GATTCCCCGCC‑CGCCCATAACTACCTGATTCGCACCACTTTCGGTGATATACGCCACTTCATCGTCATAAGGGGCGCGGGCAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:616092/233‑1 (MQ=255)
gcagTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 1:93062/239‑1 (MQ=255)
cggtttCCCGCTTGGTCGGGGC‑GTTTTCCCGCC‑CGCCCTTCACTACCGGATTCGCCCCACGTTGGGTAATAACCGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:530040/235‑1 (MQ=255)
cgctttccccctgggTACGGGCAGTTCTCACGC‑‑CGCCCATCTTCACCTGTTCCCCCACCCGTTGGGGCAAATAAGCCCTTTCATCTTCAAACTGGGCGCGGCCAATAATATCAATATCCGGTTTTTTGGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:771272/226‑1 (MQ=255)
cctgttccccatggggcggggT‑GATTTCACTCC‑CCGCCATCCCTACCGGGTTCGCCCAGCGTTGGGGGATTTACGCCCTTTCATCGGCATAATGGGGGCGGGCAATAATCCCAATACCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:958791/221‑1 (MQ=255)
ccctttCCACCCTGGTCGGGGC‑GTTTTCACCCC‑CGCCCATCCCTCCCTGATTCCCCCCCCGTTCGGTTATATACCCCCCTTCATCGTCATAATGGGCGCGGGCAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:1080074/235‑1 (MQ=255)
acattccccgctgggTCCGGGC‑TTTTTCACCGC‑CCCCCATCCCTTCCGTATTCCCACCCCGTTCGGTATAATACGCCCCTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:196135/226‑1 (MQ=255)
tCCACCCTGGTACGGGC‑GTTTTCCCGCT‑CGCCCATCACTCCCTGATTCGCACCACGTTCGGTGATATACGCCACTTCCTCGGCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGcc < 2:752506/239‑1 (MQ=255)
ccccagctgtttcggcggttttCCCGCT‑CGCCCTCTCCTACCTTATTCCCACCACCGTCGGTAATATACGCCTCTTCACCGTCATAATGGGCGCGGGCAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGcc < 2:917260/220‑1 (MQ=255)
aTGGCACGGGC‑GTTTTCACGCC‑GGCCCATCACTTCCTGATTCTCTCCACGTTCGGTGATATACGCCACTTCAGCGTCATAATGGGCGCGGGCAATAATCTCAATAGCCGGATTTGTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATa < 1:445282/238‑1 (MQ=255)
gTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTgc > 1:653522/1‑239 (MQ=255)
gTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAAAACTg > 1:751786/1‑238 (MQ=255)
gC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATCCTCCACggg > 1:1059801/1‑237 (MQ=255)
gC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCCCggc > 1:220914/1‑237 (MQ=255)
aTTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGAcac > 1:485689/1‑236 (MQ=255)
tttCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATa > 1:928684/1‑225 (MQ=255)
ttCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATTGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAAAACTCCGCGGCcccccc > 2:110460/1‑237 (MQ=255)
ccccccccTTCCCTCCCTGGTTCGCCCCCCGTTCGGTGATAAACGCCATTTCACCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGGGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGctct < 2:751786/234‑1 (MQ=255)
gCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGc > 1:88952/1‑238 (MQ=255)
cccATCCCCACCGGTTTCGCACCCCGTTCGGGGATATACGGCCTTTCATCGGAAAAATGGGGGCGGGAAAGAATCTCAAGATCCGGATTTTTCGCGCGGGAAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAg < 2:915770/239‑1 (MQ=255)
aTCCCTACCTGATTCGCACCACGTTCGGTGATATACCCCCCTTCATTGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCtc < 1:110460/239‑1 (MQ=255)
tCACTACCTGATTCGCACCCCGTTCGGGGATATACGCCACTTCCTCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:599863/200‑1 (MQ=255)
aCCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCCCGCCCCCGCAGCCCACCaaa > 2:131832/1‑238 (MQ=255)
ccgtaTTCCCCCCACGTTCGGTTATATCCCCCACTTCATCCTCATAAGGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGGAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAaca < 1:904142/235‑1 (MQ=255)
ccTGTTTCGCCCCCCTTGCGGTGATTTACGCCACTTCCCCGCCAAAATGGGGCAGGGCAATAACCCCAAAACCCGGATTTTGCGGGCGGGAAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCCCATCAaca < 2:769593/239‑1 (MQ=255)
ccTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAac > 1:788461/1‑238 (MQ=255)
gATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATCCTGCGCGGCCCCCGCGCTCTCGCAGCCCATCAACACgg > 2:904142/1‑239 (MQ=255)
aTTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATa > 1:599863/1‑200 (MQ=255)
gCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCgcgc < 1:1001196/213‑1 (MQ=255)
gCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCgcgc > 2:1001196/1‑213 (MQ=255)
accacGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACAGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTATTCGTTCGCCGCATGGCCCAATACTGCGCGGACCCCGCGCCCTCCCCGCTCACCAAAACGGGTTCgg > 2:405075/1‑237 (MQ=255)
accacGTTCGGTGATATACGCCACTTCATCGTCATAATAGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGTGGGCAGATGCCACAATTTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCAAGATGCCCCAGTTGCATAATTTCCTCGTTCGACGCATTGCCCCAACCTTCCCGGACCCCGGGCTTCCCCACCTCCTCAACACGGGtcctga > 2:904794/1‑234 (MQ=255)
cGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGACCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTGGCCGCATTGCCCAATACTCCCCGGGCCCCGCCCTCTCGCCGCCCCTCAACACGGGTTCGTGCCg > 2:24236/1‑238 (MQ=255)
tCGGTGAAATACGCCACTTCCACGTCATAATGGGCTCGGGCAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGtct < 1:1014342/238‑1 (MQ=255)
gTGATATACGCCACTTCATCGTCATAATGTGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTTGCCGCATTGCCCAATACTGCGCGGACCCCGCGCCCTTGCACCTCACCACAACGGGTTCGTGACGCTTCaa > 1:279166/1‑238 (MQ=255)
ccctcttttcggtaaaaaTGGGCGCGGGCAAATATCCCCATTCCCGGATTTTTCGGGCGGGCAAAAGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAg < 2:1019204/223‑1 (MQ=255)
cACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCCGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTCCTTGACGTCTCAATCCcccccacgg > 2:596587/1‑236 (MQ=255)
cACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCAccaccacc > 1:1019204/1‑236 (MQ=255)
cACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCACCg > 1:188120/1‑239 (MQ=255)
ttttCATCGGCAAAAGGGGCGGGGGAAAATACCCAAATATCCGGTTTTTTCGCGCGGGGAGATTCCAAAATCTCCCCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCgg < 2:1059801/237‑1 (MQ=255)
attttctgttCATAATGGGGGCGGGAAATATACCCAATATCCGGATTTTCCAGGCGGGCAGATGCCACAATCGCAAACTGTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTGCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCgg < 2:207816/230‑1 (MQ=255)
cTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGca > 1:242182/1‑119 (MQ=255)
cTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa > 1:115861/1‑161 (MQ=255)
cTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAAAACGGGTTCGTGACGTCTCAATCACCACCAGCGGa > 1:635471/1‑239 (MQ=255)
cTTCATCGTCATAATGGGCGCGGGCAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCa < 2:115861/161‑1 (MQ=255)
cTTCATCGTCAAAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGca < 2:242182/119‑1 (MQ=255)
ttCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCCCCGCTCATCAACACGGGTTCCTGACGCCCCAACCCCCACCACCGGaa > 2:561503/1‑239 (MQ=255)
tCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGTTCATCAACACGGGTTCTGGACGTACCAATCCCCCCCCGCGGaaaacc > 2:549334/1‑235 (MQ=255)
cGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCGGAATATCa > 1:47932/1‑239 (MQ=255)
gTCATAAGGGGCGCGGGCAATAAGCTCAATACCCGGATTTTTCGCGCGGGCAGATGCCACAAGCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCGGAATATCa < 1:740021/238‑1 (MQ=255)
gcgcGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTAGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCCCCGCTCATCAACACGGGTTCGGGACGGCTCAATCCCCCCCAGCGGACTATCCGCGGCGAGcca > 2:740021/1‑237 (MQ=255)
cgcgGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCAtt > 1:510289/1‑145 (MQ=255)
cgcgGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGCCGTCTCAATCACCACCACCGGAATATCAGAGGCGAGCAAt > 1:800107/1‑239 (MQ=255)
cgcgGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCGGAATATCAAAGGCGGGCAAt > 1:192664/1‑239 (MQ=255)
cgcgGGCAATAATCCCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCAtt < 2:510289/145‑1 (MQ=255)
cgGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCGGAATATCAGAGGCGAGCAAtt > 1:30369/1‑238 (MQ=255)
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TCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATA‑TTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCT‑CACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGC‑GATTTCACGCT‑CGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTCAATATCCGGATTTTTCGCGCGGGCAGATGCCACAATCTCACCCGCTTCATAACCGTTGGGAATCGTCAGGATCAGCCATTTTGCACATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGCAGCTCATCAACACGGGTTCGTGACGTCTCAATCACCACCAGCGGAATATCAGAGGCGAGCAATT > NC_000913/501472‑501935
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A