Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
260 |
102.5 |
2178490 |
93.2% |
2030352 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,538,334 |
T→G |
15.3% |
T174P (ACC→CCC) |
narY ← |
nitrate reductase 2 (NRZ), beta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,538,334 | 0 | T | G | 15.3%
| 143.8
/ 2.0
| 73 | T174P (ACC→CCC) | narY | nitrate reductase 2 (NRZ), beta subunit |
| Reads supporting (aligned to +/- strand): ref base T (19/38); new base G (12/3); total (32/41) |
| Fisher's exact test for biased strand distribution p-value = 2.46e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AATTCGTGGGTAACAGAAGATGCATTTTTCTGACTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCGTAGTAATCATCAATCTG > NC_000913/1538104‑1538568
|
atttggTGGGAAACAGTAATTTCTTTTTTCTGACTTGCCGTTTTTCAAGTTGAAGTGGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCCGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCaa < 2:508643/234‑1 (MQ=255)
aaTTTGGGGGTAATAGAAGATGCTTTTTTCTGACTTGCCGCTTTTCCAGTGGAAGTAGATTTTGTTGGACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCaa < 2:500288/239‑1 (MQ=255)
tttCGTGGGTAACAGAATGTCCATTTTTCTGACTTGCCGGTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCCCAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCCCAGGCGCGGCAGGTACATCATGAAGGTGTTTTCaaa < 2:891118/238‑1 (MQ=255)
gTGGGTAACGAGATATGCATTTTTCTGACTTGCCTTTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGc < 1:421018/239‑1 (MQ=255)
tAACAGAATGGGCATTTTTTCGGGTTACCTCTTTTCCAGTTGAAGTGTATTTTTTTTGCAGGAAACCCGCTTATGCACAAACGCCAGCCGCGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCGCGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGt < 2:902779/238‑1 (MQ=255)
tAACAGAAGATGCATTTTTCTGACTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACCATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGGGGCAGGAGCATCCTGAAGGGGTTTTCAACCTGccccgc > 1:441407/1‑236 (MQ=255)
agtttctttttttgggcTTGCCGGTTTTCCAGTTAAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGGTCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACAt < 2:932282/219‑1 (MQ=255)
agaTGCATTTTTCTGACTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACAt < 1:350382/235‑1 (MQ=255)
gaTGCATTTTTCTGACTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGGGTTTTCAACATACCCGTACATCTCCt > 1:38930/1‑239 (MQ=255)
ttttttTGATTTTCCGTTTTTCCAGTTTAAGTAGATTTTTTTGTCAGGACAACCGCTTAGGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGGCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCa < 2:854452/239‑1 (MQ=255)
tttttGTGACTGGCCGCTTTTCCAGTTGAAGTAGATTTTTTTTGACGGACCACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCa < 1:442489/239‑1 (MQ=255)
tttttCTGACTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCa < 2:660605/239‑1 (MQ=255)
ttttcttgtcttgcgttttttCCATTTGAAGTAGATTTTTTTTTCCGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCGTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCa < 2:472639/222‑1 (MQ=255)
tttCTGACTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGGACATACGTAAGGGGTTTTCCAACCACCCGGCAATCCCCTTTTGCGTg > 2:811812/1‑239 (MQ=255)
aCTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGGGTTCGCACAGGGCGGGCAGGGACATCATGAAGGGGTTTTCAAACTGCCCGGCAAACCCCTTTTGAATgggccgg > 2:314050/1‑234 (MQ=21)
tttCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATAATGAAGGGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCgg > 1:924550/1‑238 (MQ=255)
ttttGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGCTTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACACCCTGACGGGGTTTTTCAACTGCCCGTACATCTCCTTTTTCTAGGCCCCGAAG‑TGCGGGCG‑Cgggggccggttttgtaac > 2:259565/1‑224 (MQ=255)
cAACCGCTTATGCACAAACGCCAGCCACGGCATTTAACCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCGTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCcag < 1:254989/239‑1 (MQ=255)
gCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGAACATCATGAAGGTGTTTTCAAACTGCCCCTACATCTCCTTTTTCATGGCCTCGAAGTTTGGGGCG‑CGGGCCCTGTTTTCGAAATCACCGCCCACCAAGTCTTccc > 2:476612/1‑239 (MQ=255)
acaAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGGTTTCAAACTGCCCGTCCATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCC‑TGGGCACGTTTTTCGCACCCACCGCCCCGCAGTTTTTCCCAg > 1:950144/1‑239 (MQ=255)
aCGCCCTCCACGGCCTTTATCCATATCAATCAGGAAAATGCGGGCTTCTGCGGGTTTGTGGATCGTGCCGCTTGGGCCGGGCGCCACGCAGCTGGAATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTg < 2:738621/239‑1 (MQ=255)
aCGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCCCGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCCGGTTg > 1:356018/1‑239 (MQ=255)
gccagcctCGGCATTTATCCTGATCAATCAGCACAAGGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGc < 1:314050/239‑1 (MQ=255)
cagccaCGGCATTTATCCTGATCAATCAGCAAAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGccc < 1:189276/239‑1 (MQ=255)
cagccaCGGCATTTAACCTGATCAATCAGCCCAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGccc < 1:259565/239‑1 (MQ=255)
tttgatccttgataagcggCACAAGTCCGTCTTCGTTGCGTTTTGAGATGGCGCCGGTTGGGCAGGTCGCCGCGCAGCTGGGATGGAGGCAGGGTTCGCACAGGCGAGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACt < 2:214693/221‑1 (MQ=255)
ttATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGGACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGGACTCACCGCCCCGCAGTTCTTCCCAGTTTGGCCCCCAGATCACttt > 1:80880/1‑239 (MQ=255)
cTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCCTTTGCATGTCCTCGAAGTTGCGGGCG‑CGGGCACGGTTTTCGAACTCACAGCCCGGCAGTTCTTCCCCGTTTGGCCCCCAGATCCCttttgcc > 1:994074/1‑234 (MQ=255)
gATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGCAGGGGTTTTCAAACTGCCCTGACATCTGCTTTTTCATGGCCTCGCAGTTGCGGTCG‑CCGGCCCGGTTTTCGGACTCCCCCCCCAGCAGTTCTTCCCCGTTTTGCCCCCAGAACaacttggccctc > 2:587817/1‑228 (MQ=255)
gATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGGGTTTTCAAACTGCCCGTACCTCCCCTGTTGCCGGGCCCCGAAG‑TGTCGTCGTCGGGCAGGTTTTTTGACCTAACCCCCCACCAGTTTTTCCCCTTTTGGccccacgacacctttgtcatc > 2:1078017/1‑221 (MQ=255)
gATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCC‑CGGGCCCGTTTTTCGAACTTCCCCCCCCACAGGTTTTTCCCGTTTGGCCCCCAGAACACTTTGGCCATc > 2:592412/1‑239 (MQ=255)
atcaatcaGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGGTTGGCCCCCAGATCACTTTGTcactcc > 1:430720/1‑234 (MQ=255)
tcaGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTAGCGGTTG‑CGGGCACGTTTTTCGAACTTACCACCCACCAGGTCTTCCCAGTTTTGCACCCAGATCACTTTTGCCCTCCGttt > 1:687262/1‑238 (MQ=255)
tcaGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGGACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑GGGGCACGTTTTTCGAACTCACCGCCCGGCAGTTCTTCCCATTTTGGCCCCCGGGTAACTTTTTCCATCCGttt > 1:1077896/1‑238 (MQ=255)
ccatcccGTCTTCTTCGCGTTTGTAGATAGCGCCGCTGGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCa < 2:924550/234‑1 (MQ=255)
cggtttcttcGCGTTTGTAGATAGTGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCa < 1:637326/233‑1 (MQ=255)
tcttctTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCGGCAGTTCTTCCCAGTTTGGCCCCCCGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGa > 1:756293/1‑239 (MQ=255)
tcttctTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGa > 1:419189/1‑239 (MQ=255)
ttacgcgTTTGTAGATTGCCCCGGTTTGGCGGGGCACCCGGCAGGTGGGATGGAGGCAGTGGTCGCACAGGGCCGGCGGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAATTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAAcgc < 2:160296/236‑1 (MQ=255)
ttcGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGCTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATTGCCTCGCAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTTACAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAATGAActcg > 1:572760/1‑239 (MQ=255)
cggttGTAGTTGGCGGCGGTTGGGAAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCg < 1:582333/236‑1 (MQ=255)
gTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCgg > 1:633601/1‑238 (MQ=255)
ttgtgtaaggcgcCGGTGGGGCGGGGTGCACCGCAGCGGGGTTTGGGGCAGTGGTCTCACAGGCGTGGCAGGTACATCATGAAGGTGTTTTCAAGCTGCCCGTACATCTCCTTTTGCATGTCCTCGAAGTTGCGGTCG‑CGGGCCCGTTTTTCGAACTCACCGCCCAGCAGTTCTTCACAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTAAATCAGTGAACGCGGGCGAg < 2:572760/229‑1 (MQ=255)
ttGGAGGTAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAg < 1:592412/238‑1 (MQ=255)
tttgaattcccccggTTGGGCCGGGTGCCCCGCAGCTGGGATTGAGGCAGTTTTCGCACAGGGGGGGCAGGTACATCATGAAGGTTTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCa < 2:873921/228‑1 (MQ=255)
ggTAGAGAGCGCCGCTTGGGCCGGTCGCCACGTCGCTGGGGTTGAGTCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTTCCCGTACATCTCCTTGTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCa < 2:687262/238‑1 (MQ=255)
tgaatggcgcCGCTTGGGCCGGTCGCCACGCAGGTGGGGTGGAGGCAGTGGTCGCAGAGGCGGGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGt < 2:80880/233‑1 (MQ=255)
taaaatgggccggTTGGGCGGGTCGCCACGCAGCGGGGATGGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGTGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGt < 2:860237/231‑1 (MQ=255)
cgccgcTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCCGTTCTTCCCCGTTTGGCCCCCAGATCACTTTGTCCCTCCGTTTGCCGTCAATCAAGGAAccgggggggcgcatggggaaa > 2:276303/1‑219 (MQ=255)
cgccgcTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATAATGAAGGTGTTTTCAAACTGCCCGGAACTCTACTTTTGCCTGGCCTCGAAGTTGCGGTCC‑TGGGCCCGCTTTTCGAACTTACCGCCCAGCCGTTCTTCCCAAGTTGGGCCCCCGTTCCCCTTGTACCTCCGTTTCCCGGCAACCAGTGTACGCAGGGGacgcggtggaata > 2:120382/1‑227 (MQ=255)
cggttGGGCAGGTGGCCCCGCAGGGGGGATTGAGGCAGGGTTCGCACAGGCGCGGCAGGTACATCATGAAGGGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGt < 2:756293/236‑1 (MQ=255)
cgcTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCC‑CGGGCACGGTTTTCGAACTTACCGCCACGCAGGTTTTCCCCGTTTGGCCCCCCGATCACCTTTTCCATCCGTTTTCCGTCAAACAGGGAACCGGGGCGGGCAGTCGGaaaagtt > 2:698533/1‑234 (MQ=255)
ggTCGCCCCGGAGCGGGGATTGGGGGAGTGTTCGCGCGGGCGCGGGAGGGACATCATGAAGGTGTTTTCAAACCGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCg < 2:586435/239‑1 (MQ=255)
ggTCGCCACGCAGCTGGGGTTGAGGCAGTGTTCGCCCAGGGGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCg < 2:356018/239‑1 (MQ=255)
cGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACCCGGGCGAGCATTAGGAATATGTTTGCCTTCCg‑gg > 1:294113/1‑237 (MQ=255)
cccgcgGCGGGGGTTGGGGCAGTTTTCGCACAGGCGGGGCAGGTACATCATGAAGGGGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTgcg < 2:950144/236‑1 (MQ=255)
cACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTgcg < 1:697373/238‑1 (MQ=255)
ccggtGGGATTGGGGGAGTGTTCGCACGGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGCCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATg < 2:419189/235‑1 (MQ=255)
cGCACAGGCGCGGCAGGTACATCATGAAGGAGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCC‑CGGGCACGGTTTTCGAACTCACCGCCCAGCAGTTCTTCCCCGTTTGGCCCCCAGATCACTTTTTCCATCCCTTTTCCGTCAATCCGTTAACCCGGGCGAGCAGTAGGGATATGTTTTCTTTCCGTGTG‑GCTATGACAATTTTCGTAGGCGGAgggg > 2:629651/1‑237 (MQ=255)
gCACAGGCGCGGCAGGTACCACATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGa < 1:208816/239‑1 (MQ=255)
ccccaGGGGCGGCAGGGTCATCATGAAGGTGTTTTCAAACTGCCCGGTCATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGa < 2:633601/236‑1 (MQ=255)
ggCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGACACCTTTGTCCATCCGTTTTCCGTCCATCCGTGAACCCGGCGGCGCGACAGGAACATGTTTTCCCTTCG‑GGGGGCTCGGCAAAGGTTCTAAGTCTCAGGGGAAGGGt > 2:206099/1‑239 (MQ=255)
cgcgGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAAATCACCGCCCCGCAGTTCTTCCCAGTTTGGCCCCCCGATAACTTTGTCCATCCGTTTGCCGTCAATCCGTGAACGCGGGCTGGCCGTGGGAATATGTTTCCCTTCCG‑GTGCGCTTTCCAAATGTTGCAATTCGAGGGGGAAAGGtac > 2:180185/1‑237 (MQ=255)
gggCAGGTAAATCATGAAGGTGTTTTCAAACTGCCCGTACTTCGCCTTTTGCATGGCCTAGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCg < 1:576968/237‑1 (MQ=255)
cgggtggTCCATGAGGAAGGTGTTTTCAAACTGCCCGTACATTCCCTTTGGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCg < 1:476612/233‑1 (MQ=255)
cgGCAGGTACATCATGAAGGTTTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCg < 1:698533/238‑1 (MQ=255)
cgGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGGGCAGTAGGAATATGTTTGCCTTCCG‑CTGCGCTATGCAAATGTTCGTAGTCGAAGGGGAACGGTTCgt > 1:813942/1‑239 (MQ=255)
ggCAGGTACACTAGGAAGGTTTTTCCAAATGGCCCGTACATCTCCTTTGGCATGGCCCCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCgta < 2:620800/239‑1 (MQ=255)
gCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGGTTGACTTCCG‑GGTCGCTATGCAAATGTTCGTAGTCGAAGGGGAAAGGTTCggag > 1:620800/1‑239 (MQ=255)
aGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCgtagt < 1:276303/238‑1 (MQ=255)
tttcatcatGTAGGTTTTTGTAAACTTCCCGTACATCTCCTTTTGCATGGCCCCTAAGTGGCGGTGG‑CGGGCACGTTTTTCGAACTCCCCGCCCTGGAGTGCTTCCCAGTTTGGCGCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCGTAGTAat < 2:317628/236‑1 (MQ=255)
tACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCCCTTTGTCCATCCGTTTGCCGTCAATCAGTGAACCCGGGCGGCCAGTAGGAATATGTTTGCCTTCCG‑GGGCGCCATGCAAAGGTTCGTAGCCGAAGGGGAAAGGTTCggatgaaat > 2:63984/1‑231 (MQ=255)
aaGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATTTGTTTGCCTTCCG‑GTTCGCTATGAAAATGTTCGTAGTCGAAGGTTAAAGGGTCGAGGCAATCATAAATCtc > 2:767297/1‑238 (MQ=255)
tgtTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTgcg < 2:746056/182‑1 (MQ=255)
tgtTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTgcg > 1:746056/1‑182 (MQ=255)
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AATTCGTGGGTAACAGAAGATGCATTTTTCTGACTTGCCGCTTTTCCAGTTGAAGTAGATTTTTTTGTACGGACAACCGCTTATGCACAAACGCCAGCCACGGCATTTATCCTGATCAATCAGCACAATGCCGTCTTCTTCGCGTTTGTAGATAGCGCCGCTTGGGCAGGTCGCCACGCAGCTGGGATTGAGGCAGTGTTCGCACAGGCGCGGCAGGTACATCATGAAGGTGTTTTCAAACTGCCCGTACATCTCCTTTTGCATGGCCTCGAAGTTGCGGTCG‑CGGGCACGTTTTTCGAACTCACCGCCCAGCAGTTCTTCCCAGTTTGGCCCCCAGATCACTTTGTCCATCCGTTTGCCGTCAATCAGTGAACGCGGGCGAGCAGTAGGAATATGTTTGCCTTCCG‑GTGCGCTATGCAAATGTTCGTAGTCGAAGGTGAAAGGTTCGTAGTAATCATCAATCTG > NC_000913/1538104‑1538568
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
