Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F9 I0 R1	260	102.5	2178490	93.2%	2030352	226.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,829,873	T→G	20.8%	H298P (CAC→CCC)	astA ←	arginine succinyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,829,873	0	T	G	20.8%	141.3 / 3.4	72	H298P (CAC→CCC)	astA	arginine succinyltransferase
Reads supporting (aligned to +/- strand): ref base T (10/43); new base G (14/4); total (25/47)
Fisher's exact test for biased strand distribution p-value = 1.20e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATGACGTCCTGGGCTTC  >  NC_000913/1829639‑1830108

atTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CCAA‑AGCCCGGTTGCCGGGTCGGGACGCAC‑CAGGCCCCCCC‑GG‑CAATGGGGATa                                                                                                                                                                                                                                            >  1:257571/1‑239 (MQ=255)

      ttgccATAACACCTCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑AGCTCGGTTGCCGGATAGGTAAGCCC‑CAGCACCACGC‑GG‑AAATGGGGATAAatt                                                                                                                                                                                                                                        >  1:549050/1‑237 (MQ=255)

      ttgccATAACACCTCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAAT‑CATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTTAAAT‑CCAA‑AGCCCGGTTGCCGGATCGGGACGCAC‑CCGCCCCACCC‑GG‑AAAAGGGGAAAAatttta                                                                                                                                                                                                                                     >  2:438609/1‑237 (MQ=255)

        gccATAACACCTCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCCCCGTTGGCGGATCGGTACGCCC‑CAGCACCCCGC‑GG‑AAATGGGGGAAATTTTCAt                                                                                                                                                                                                                                    >  1:266212/1‑239 (MQ=255)

          cATAACACCTCGCCCGATACCGGATTACGCTTCACCCGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAACCCATAAAGTCATGCTGTTTGCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTg                                                                                                                                                                                                                                  <  1:547448/239‑1 (MQ=255)

                   tCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTTAAAT‑CAAA‑CACCCGGTTGGCGGGCCGGGGCGCCC‑CAG‑GCCACACGGG‑ACACGGGGAGAAATTTCCTTGGCG‑ACcagg                                                                                                                                                                                                                        >  2:398689/1‑239 (MQ=255)

                   tCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTACAATCCAAA‑CGC‑CGGGTGCCGGGACGGAACCGAC‑CACCCCCCCCC‑GG‑AAAAGGGGGAAAATTTATTTGAGG‑ACcagg                                                                                                                                                                                                                        >  2:454125/1‑239 (MQ=255)

                   tCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGGTAAAAT‑CAAA‑CCCTCGGTTGCCGGGTCGGTACGCCC‑CAGCACCCCCC‑CG‑AAATGGGGGAAATTTTCATTGGCC‑ACcagg                                                                                                                                                                                                                        >  2:1017891/1‑239 (MQ=255)

                   tCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCACCGGCGTGGCATTT‑GAGGGCATCCAGGTGTGCGGCGGTTACAAT‑CAAA‑CCACCGGGTGCCGGACTAGGAGGCAC‑CAACACCACGC‑GG‑AAAAGGTGAAAAATTTCATTGGCG‑aaaaaa                                                                                                                                                                                                                        >  2:530630/1‑234 (MQ=255)

                   ccgaccGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTAACCAGTCCACGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACcagg                                                                                                                                                                                                                        <  1:522850/235‑1 (MQ=255)

                   ccccccGATACCCGTTTGCCCTTCCCCCCCAATTCGGCCTGGGCCGTTATCCAGTCACCGTTAACCCATAAAGGCATGCGGTTTTCTCCCCTGCGCACAGGCGCACAAGACGAACGCGATCCCCGGCGTGGCATGT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCGCGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACcagg                                                                                                                                                                                                                        <  2:632515/236‑1 (MQ=255)

                        cacatccGGTTTACGTCTCACAACCGGTGCCCCCTGGCCCCTTATCCGGGCACCGTTAATCCATAAAGTCATTCCGGTTTCCCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGGGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCaggcaggc                                                                                                                                                                                                                   <  2:317808/234‑1 (MQ=255)

                          aTACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGGACGGAC‑CAGCACCACCC‑GGCAAAAGGGGA‑AAATTTCATTGGCG‑ACCCCGCAGGCTg                                                                                                                                                                                                                 >  1:692737/1‑239 (MQ=255)

                           tACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑a                                                                                                                                                                                                                             <  1:898967/226‑1 (MQ=255)

                                   tACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAAT‑CATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGcc                                                                                                                                                                                                      <  1:438609/239‑1 (MQ=255)

                                    tcccttcccccgccttGCCCCCTGGCCCTTTTACCAGTCCCCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGcc                                                                                                                                                                                                      <  2:451564/224‑1 (MQ=255)

                                     cGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCCCGGTTTGCGGGTCGGGACGGCC‑CAGCACCACCC‑GG‑AAATGGGGATAATTTTCATTTGCGCCCCAGGCGGGCGGGGaaacacc                                                                                                                                                                                                        >  2:764023/1‑234 (MQ=255)

                                         ctcacgccgattgtccttGGCCCGTTTTCCCGTCACCGTTTATCCATAAAGTCATGCTGTTTTCCCCTCTGCGCACCGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTgcg                                                                                                                                                                                                 <  2:222245/222‑1 (MQ=255)

                                           acccgcgATGCGCCCTGGCCCGTTACCCAGTCACCGTTAAACCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGAACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCa                                                                                                                                                                                               <  1:384371/236‑1 (MQ=255)

                                                  aTGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACCC‑GG‑GAATGGGGATAATTTTCATTGGCG‑GCCAGGCAGGCTGGGGAAA‑CGCCCTGCCCAGGCTGc                                                                                                                                                                                         >  1:15759/1‑238 (MQ=255)

                                                                     ccAGTCACCGTTAACCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAg                                                                                                                                                                     <  1:398689/239‑1 (MQ=255)

                                                                       aGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CCGCACCACCC‑GG‑GAATGGGGATAATTTTCATTGGCG‑CCCAGGCAGGCTGGGGAAA‑CCCCCCCCCCACGCTGCCCTTCTTCCCCCCCCCCCAGcc                                                                                                                                                                   >  2:918281/1‑239 (MQ=255)

                                                                         tccccttcacgcctaaaaGTCTGGCTGTTTTCGCCGCGGGGCACAGGGGCACCAGAAGAACGCGGTCCCCGGGGGGGCATTT‑GAGGGCATACAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑a                                                                                                                                                                <  2:654170/224‑1 (MQ=255)

                                                                          ccccGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGcc                                                                                                                                                                   <  1:554840/234‑1 (MQ=255)

                                                                          cACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGGCGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑Ac                                                                                                                                                               <  1:12869/239‑1 (MQ=255)

                                                                           aCCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTTAAAT‑AAAA‑CCCCCGGTTGCCGGATCGGTACGCCC‑CCGCCCCCCCC‑GG‑CAAAGGTGATAATTTTCCTTGGCG‑ACCCGGCAGGCTCGGAAAA‑ACCCCCGCCCAGGCTGCCCTTCTTCCACTTccaccccccccct                                                                                                                                                               >  2:952515/1‑231 (MQ=255)

                                                                           aCCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCCCGGTTGCCGGATCGGGACGCAC‑CAGCACCACGC‑GG‑AAATGGGGGTAATTTTCATTGGCG‑ACCAGGCCGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAACCG‑a                                                                                                                                                                >  1:198916/1‑237 (MQ=255)

                                                                                 aaTCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCCC‑CAGCACCACGC‑GG‑AAATGGTGGTAATTTTGATTGGCA‑ACCAAGAGAGATGGGAAAT‑CACCCCGCCCAGGCTGCCCTCTTTCCACTCCCACCACCCGCACtttaag                                                                                                                                                         >  2:533138/1‑236 (MQ=255)

                                                                                  aacccaaaaggcatctttttttCCCCTCTGCGCCGCGGCCCCCCGGACGAACGGGACCCCCGGCGTGGC‑TGT‑GGGGGCATCCGGTTGGGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCGCCACGC‑GG‑AAATGGGGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGa                                                                                                                                                      <  2:940401/221‑1 (MQ=255)

                                                                                          aGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTgc                                                                                                                                                                                                  <  1:610650/189‑1 (MQ=255)

                                                                                              aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGGTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑GAATGGGGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAAGCTGCCCTTTTGCCCCTTCCACCCCCCG‑CCTTTTACGGagtgggcgcccc                                                                                                                                           >  1:754072/1‑228 (MQ=255)

                                                                                              aTGCTGTTTTCCCCTCTGCGCCAAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGGGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCAcg                                                                                                                                           <  1:518506/239‑1 (MQ=255)

                                                                                                  tttttccccctcTGCGCCCAGGCCCACCAAACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGt                                                                                                                                       <  1:454125/231‑1 (MQ=255)

                                                                                                      ttCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCCCGGTTGCCGGCTCGGTACGCAC‑CCGCACCACGC‑GG‑GAATGGGGGGAATTTTCATTGGGG‑GACAGGCAGGATGGGAAAT‑CGCCCTGCGCAGGCGCCCCTTCTGCCACTTACAACACCCG‑CCCTTTAAAGAAGGCACACACACGGGCggg                                                                                                                                   >  2:429778/1‑237 (MQ=255)

                                                                                                       tcccctcTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGGGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATg                                                                                                                                  <  1:421747/236‑1 (MQ=255)

                                                                                                                        cgaaCCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGt                                                                                                                    <  1:255301/233‑1 (MQ=255)

                                                                                                                          ccccAGACGAACGCGTTCCCCGGCGTGGCTTTT‑GGGGGCACCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGcc                                                                                                               <  2:177944/237‑1 (MQ=255)

                                                                                                                          cACCAGCCGAACGCGATCCCCGGGGTGGCAGTT‑GAGGGCATCCAGTTGTGCGGAGGTTAAAAA‑CAAA‑CGCTCGGTTGCCGGAGCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGcc                                                                                                               <  1:789794/239‑1 (MQ=255)

                                                                                                                          cACCAGACGAACCGTAGCCCCGGCGTGGCATTG‑GGGGGCATCCAGTTGGGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCCCCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCCCCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGcc                                                                                                               <  2:692737/239‑1 (MQ=255)

                                                                                                                                  gaagcggacccccGGCGTGGCATTT‑GGGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCa                                                                                                       <  1:732632/230‑1 (MQ=255)

                                                                                                                                    accgctcccccGGGGTTGCATTTGGAGGACA‑CCCGGTGGGGGGCGGTTAAAAT‑CAAACCGCTGGGTT‑CCGGATCGGGCCGCCC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCaaa                                                                                                     <  2:254912/232‑1 (MQ=255)

                                                                                                                                     cgcgATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGGACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCCCTTCCACCAGCCG‑ACTTTTTAGGATGGCGGGCACCCGGGCGATGTCACCCTCAAACGTCGGCCCCCCGCCAAAg                                                                                                    >  1:698693/1‑239 (MQ=255)

                                                                                                                                          tCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGGGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGt                                                                                                <  1:533138/238‑1 (MQ=255)

                                                                                                                                            cccGGGGTGGATTTG‑GGGGGTACCCAGTTGTGGGGCGGTTAAAAT‑CAAA‑GGCTCGGTTGCCGGGCCGGTACGAAC‑CAGCACCACGG‑GG‑AAATGGTGATAATTTTCATTGCCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCATTTCCACCAGCAG‑ACTTTTACGGATGGCGCGCACGCGGTAGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGa                                                                                             <  2:991958/239‑1 (MQ=255)

                                                                                                                                             ccGGGGTGGCTTTT‑GGGGGCATCCAGTTTGGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTCCGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGat                                                                                            <  2:698693/239‑1 (MQ=255)

                                                                                                                                             ccGGCGTGGCATTT‑GGGGGGATCCAGTTGTGCCGCGGTTAAAAT‑CAAC‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGATCCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGat                                                                                            <  1:530630/239‑1 (MQ=255)

                                                                                                                                             ccGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGat                                                                                            <  1:875448/239‑1 (MQ=255)

                                                                                                                                             ccGGCGGGGCATTT‑GAGGGCATCCAGTTGGGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGat                                                                                            <  1:1003933/239‑1 (MQ=255)

                                                                                                                                                                     gcggttggaggggtttAAAAT‑CAAG‑CGCGCGGTTCGGCGATGGGTACCCCC‑CAGCACCAAGG‑GG‑AAATGGGGATAATTTTCATGGGCG‑ACCAGGAAGGCAGGGAAAG‑CGCCCTGCGCAGGCTGCCCTTCGGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACctt                                                                     <  2:32761/225‑1 (MQ=255)

                                                                                                                                                                       gtttggcggggTTTAAAAT‑GAAC‑TGCTCCGTTGCCGGGCCGGTACCGAC‑CAGCCCCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACcttct                                                                   <  2:15759/234‑1 (MQ=255)

                                                                                                                                                                       gttgggggggtgTTAAAAG‑AAAA‑CGCGGCGTTGCCGGGTGGGGACCCACACGGCCCAACG‑‑GG‑AAAGTGTGGTAATTTTCATTGGGC‑GCCAGGCCGGGTGGGAAATGCGCCTGGCCGAGG‑TGGCCTTCCGCCCCCTCCCCCCGGCG‑GCCTTTACCGATGGCGCGCACGGGGTCGATGGCACAATCAAGCGGCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACcttct                                                                   <  2:988433/228‑1 (MQ=255)

                                                                                                                                                                       ggtgggcggcgGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCGC‑CAGCCCCACGC‑GG‑AAATGGTGATAATTTTCATTTGCG‑ACCAGGCAGGCTGGGAAAG‑CGCCCTGGGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACcttct                                                                   <  2:823743/234‑1 (MQ=255)

                                                                                                                                                                       gTTGTGCGGGGGTTAAAAT‑CAAA‑CGCTTGGTTGCCGGAACGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACcttct                                                                   <  2:266212/239‑1 (MQ=255)

                                                                                                                                                                        ttGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCCCGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACcttct                                                                   <  1:377821/238‑1 (MQ=255)

                                                                                                                                                                                 ggTGAAAAA‑CAAA‑CGCTCGGTGGCCGGACCGGTACGCAC‑CAGCCCCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGACAT‑CGCCCTGGGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGc                                                          <  2:44759/238‑1 (MQ=255)

                                                                                                                                                                                                   tCGGTTGCCGGATCGGTACGCAC‑CAGCCCCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGgcg                                          <  1:764023/238‑1 (MQ=255)

                                                                                                                                                                                                     ggTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGt                                                                                                <  1:406499/182‑1 (MQ=255)

                                                                                                                                                                                                     ggTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTAGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATgc                                                                                                >  2:406499/1‑181 (MQ=255)

                                                                                                                                                                                                         gCCGGATCGGTACGCAC‑CAGCCCCACGC‑GG‑AAATGGTGATAATTTGCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTg                                   <  1:93265/239‑1 (MQ=255)

                                                                                                                                                                                                           cGGATGGGTCCGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATGGGCG‑ACCAGGCAGGCTGGGAAAC‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGc                                  <  2:788316/238‑1 (MQ=255)

                                                                                                                                                                                                             ggcgccgtccgcccccaccccccgc‑gG‑AACTGGGGATTATTTTCCTTGGGG‑GCCAGGCCGGCCGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCCCCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCgg                                <  2:667066/217‑1 (MQ=255)

                                                                                                                                                                                                                 ggTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCCCGGGCAGGCGCGGTTTGCGGATGt                            >  1:44636/1‑238 (MQ=255)

                                                                                                                                                                                                                        ac‑cagcaccaCGC‑GG‑AAATGGCGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGCCGATGTCACACTCAAGCGTCGGCCCACCGCCAAAGATTGCGACATAATTACGGGAGCGAAAACCTACTTTCCCCAGCACCCCCCGGGCAGGCGCGGCTTGCgagagaccccaacc                    >  2:456200/1‑226 (MQ=255)

                                                                                                                                                                                                                             gccccccgc‑gG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATg                <  1:102012/233‑1 (MQ=255)

                                                                                                                                                                                                                             gcaccaCGC‑GG‑AAATGGGGATAATTTTCAGTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATg                <  1:366760/239‑1 (MQ=255)

                                                                                                                                                                                                                                   cgc‑gG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCCCACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTCCTTTCTCCCGCACCCCCCAGGAAGACGCGGTTTTCGGGGTTACCACGCCGATGAGGTcc          >  2:620713/1‑239 (MQ=255)

                                                                                                                                                                                                                                   cgc‑gG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGCTATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATGACGTcc          >  1:39196/1‑239 (MQ=255)

                                                                                                                                                                                                                                   cgc‑gG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGGGAAAACCTTCTTTCTCCACCACCGCGCGGGCAGGCGCGGGTTGCGGGTGTACCTGAcccaagaagccc          >  2:102012/1‑229 (MQ=255)

                                                                                                                                                                                                                                          aaaTGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATGACGTCCTggg      <  1:952515/238‑1 (MQ=255)

                                                                                                                                                                                                                                          aaaTGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCCCGGGCAGGCGCGGGTTGCGGATGTACCGGACCGATGACGTCCTggg      >  1:583461/1‑238 (MQ=255)

                                                                                                                                                                                                                                             tGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATGACGTCCTGGGCTTc  <  1:918281/239‑1 (MQ=255)

                                                                                                                                                                                                                                              ggTGATAATTTTCATTGGCG‑CCCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCCGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGACACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATg                <  1:533563/224‑1 (MQ=255)

ATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACGCGATGCGCCCTGGCCCGTTATCCAGTCACCGTTAATCCATAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTT‑GAGGGCATCCAGTTGTGCGGCGGTTAAAAT‑CAAA‑CGCTCGGTTGCCGGATCGGTACGCAC‑CAGCACCACGC‑GG‑AAATGGTGATAATTTTCATTGGCG‑ACCAGGCAGGCTGGGAAAT‑CGCCCTGCGCAGGCTGCCCTTCTGCCACTTCCACCAGCCG‑ACTTTTACGGATGGCGCGCACGCGGTCGATGTCACACTCAAGCGTCGGCCCACCGTCAAAGATGTCGATATAGTTACGGTAGCGAAAACCTTCTTTCTCCAGCACCGCGCGGGCAGGCGCGGTTTGCGGATGTACCTGACCGATGACGTCCTGGGCTTC  >  NC_000913/1829639‑1830108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A