Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 260 102.5 2178490 93.2% 2030352 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,258,626 A→C 17.8% T296P (ACC→CCC)  dinF → oxidative stress resistance protein, putative MATE family efflux pump, UV and mitomycin C inducible protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,258,6260AC17.8% 212.9 / 4.2 94T296P (ACC→CCC) dinFoxidative stress resistance protein, putative MATE family efflux pump, UV and mitomycin C inducible protein
Reads supporting (aligned to +/- strand):  ref base A (44/29);  new base C (7/13);  total (52/42)
Fisher's exact test for biased strand distribution p-value = 7.42e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACATTGCTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTA  >  NC_000913/4258395‑4258857
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        
actttGCTGGTTGGTTTGCTAAGGGGGCGTAAATTCCTAAACCT‑CCGCGGAATTTCCGGGA‑AAATGCTGAAAACGGCTGGGCGAGGAAACTTCGTGC‑GT‑TTGCGGGCGTTTAACCGCGATATCATGCTGTGTGCGCTGTTGTGGAAACCCTGTTTCGGCGCGTTCCCCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTAc                                                                                                                                                                                                                                  <  2:806681/236‑1 (MQ=255)
  aTTGCTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGGGTGACATTATCGCTGTTAACGCGGTTCTGGTGACCCTCCCCC‑CCTTTAcc                                                                                                                                                                                                                                 >  2:546030/1‑238 (MQ=255)
  aTTGCTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACCCTACTCC‑CCTTTAcc                                                                                                                                                                                                                                 >  1:1079319/1‑238 (MQ=255)
    tgctgcTTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCTTCCTTGGCCCGCGACTGGGGCGGGACATTATCGCTGTTAACGCGGTTTTGATGACCCTACCCA‑CCTTTaaccc                                                                                                                                                                                                                               >  2:125337/1‑234 (MQ=255)
    tGCTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCg                                                                                                                                                                                                                                >  1:955615/1‑237 (MQ=255)
      cTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGGAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTa                                                                                                                                                                                                                            >  1:1017130/1‑239 (MQ=255)
      cTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGGGACTGGGGGGTGACATTTTCCCTGTTACCCGGGTTCGGATGAGGCAACCCC‑CCTTTACCGccat                                                                                                                                                                                                                            >  2:667601/1‑237 (MQ=255)
      cTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCC‑CCTTTACCGCCTa                                                                                                                                                                                                                            >  1:454400/1‑239 (MQ=255)
         aTTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGCGTGACATTATCGCTGTTAACGCGGTTCTGTTGACGCTCCTCA‑CCTTTACCGCCTACgc                                                                                                                                                                                                                         >  1:82670/1‑239 (MQ=255)
           tGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCCCGCGCCTGGGGGGTGACATTATCGCTGTTAACGCGGTCTTGTGGACCCAACCCA‑CCTTTACCGCCCATggcg                                                                                                                                                                                                                       >  2:306831/1‑236 (MQ=255)
             gTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGGGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGGGGGACATTATCGCTGTTAACCCGGTTTTGATGACGCTACTCC‑CCttctgtcccttaaacc                                                                                                                                                                                                                       >  2:435918/1‑223 (MQ=255)
              tttgttattGGGGCGTAAAACCCTCAAACT‑ACGGGGAATTTCCGGCG‑AAATGCTTAAAACTGCCTGGCGAGGAAACTGCCGTC‑GC‑TTGCTGGCCCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCC‑CCTTTACCGCCTATGCGCTgg                                                                                                                                                                                                                    <  2:444526/231‑1 (MQ=255)
              tcttttatgggggCGAAAAACCCACAAACT‑CCGCGAAATTTCCGGGG‑AATTGCTGAAACCTGCCTGGGGAGGAAACTCCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCGGTTGTTGCACCTCTGTTTCGGCGCGATCACCGTACTTGGCGCCCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCC‑CCTTTACCGCCTATGCGCTgg                                                                                                                                                                                                                    <  2:916668/227‑1 (MQ=255)
               cggCTAATGGTTGGTAAAATCCTGAAACT‑CCGCGGAATTTCCGGCG‑AAATGCTGAAACCTGCCTGGAGAGGAACCTTCCGGC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTgg                                                                                                                                                                                                                    <  1:79742/236‑1 (MQ=255)
               cTGCTAATGGTGCGTAAAATCCTCAAACT‑CCGCGGAATTGCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGGTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGa                                                                                                                                                                                                                   <  1:770105/239‑1 (MQ=255)
               cTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTgg                                                                                                                                                                                                                    <  1:727676/238‑1 (MQ=255)
                tGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGAt                                                                                                                                                                                                                  >  1:10950/1‑239 (MQ=255)
                          gctaaaaaTCCCAAAACT‑CCGGGGATTTTCCGGGG‑AAATGTCAAAAACTGCCTGGCGGGGAAACTCCCGTC‑GC‑TTGGTGGCGCTTAACCGGGATTACATGGTGCGTTCGGTGTTGTTGGAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGcc                                                                                                                                                                                                         <  2:8345/234‑1 (MQ=255)
                           cGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCt                                                                                                                                                                                                        >  1:747852/1‑238 (MQ=255)
                            gTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGCCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCC‑CCTTTACCGCCTATGCCATGGTGGGTTTTGCCTaa                                                                                                                                                                                                      >  2:255447/1‑238 (MQ=255)
                            gTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGCGTGACATTCTGGCTGTTAACGCGGTTCTGATGAGGCTACTCT‑CCTTTACCCCCTATGCGCTGGATGGTTTTGCCTAc                                                                                                                                                                                                      >  2:828111/1‑239 (MQ=255)
                            gTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTCACGCGGTTCGGTTGGCGCTACTCA‑CCTTTACCCCCTATGCGTTGGAGGGTTTTGctcac                                                                                                                                                                                                      >  2:286587/1‑235 (MQ=255)
                            gTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCt                                                                                                                                                                                                                             <  1:541014/216‑1 (MQ=255)
                            gTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCt                                                                                                                                                                                                                             >  2:541014/1‑216 (MQ=255)
                            gTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGTTGGTTTTGCCTa                                                                                                                                                                                                       >  1:1037948/1‑238 (MQ=255)
                            gTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTAc                                                                                                                                                                                                      >  1:277039/1‑239 (MQ=255)
                            gTAAAATCCTAAAACTGACG‑GTATTGTCCGGGG‑AAATGCGGAAACCTGCCTGGGGGGGAACTTCCCGTC‑GT‑TGGCTGGCGCTTACCCGCGATATCAGCGGGGGTTCGCTGTTGTTGCAATGCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTa                                                                                                                                                                                                       <  2:23982/238‑1 (MQ=255)
                                            ctcccggttattCCGGGGAAAATGCTAAAACCGGCCGGGGGGGGAAACTTCCGTC‑GT‑TGGCGGGCGTTTAACCGCGATATCATGCTGCGTTGGCTGTTGTGGAAACTCTGTTTCGGCGCGAGCACGGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTCCCCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCa                                                                                                                                                                                        <  2:1039669/229‑1 (MQ=255)
                                              cgcgGAATTTCCGGGC‑AAAGGCTGAAACCTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTACCCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTc                                                                                                                                                                                     <  1:810079/239‑1 (MQ=255)
                                              cgcgGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGCCATTATCGCGGTTAACGCGGTTCTGTTGCGCCTATCCC‑CCTTTCACCCCTACGCGCTGGGTGGTTTTGCCTACGCGGTTGAAgcgacccc                                                                                                                                                                                     >  2:565915/1‑234 (MQ=255)
                                                gggAATTTCCGGTG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTGGGCGCGCGACTGGGGAGTGACATTACCGCTGTTAACGCGGTTCTGATGCCGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCg                                                                                                                                                                                   <  1:565915/238‑1 (MQ=255)
                                                cgGATTTTCCGGCG‑AAATGGTGAAACCTGCCTGGCGAGTAAATTCCCGTC‑GC‑TTGCGGGCGCTTACCCGCGATATCATGCTGCGTTCGCTGGTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCg                                                                                                                                                                                   <  2:277039/239‑1 (MQ=255)
                                                  gattttCCGGCG‑AATTGTGGAAATCTGCCTGGGGAGGAACCTT‑CGTCGGC‑TTTCTGGGCCTTAACCGGGATATCGTGCTTGGTTCGCTGTTGTTGCAACTGTGTTTGGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCC‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGt                                                                                                                                                                                 <  2:301147/236‑1 (MQ=255)
                                                   atttgccGGGG‑AAATGTGGAAACCGGCCTGGGGAGGAACCTTCCGTG‑GC‑TTGCTGGCGCTTAACCGGGATATCATGTTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTGGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGAGGACGCTACTCC‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGt                                                                                                                                                                                 <  2:906756/233‑1 (MQ=255)
                                                   aaTTTCGGGCG‑AATGTCTGAAAACTGCCTGGCGGGGAAACTGCCGGC‑CG‑CTGCTGGGGTTTAACCGCGATATCATGCTGCGTTCGTTGTTGTTGCAACTTTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGt                                                                                                                                                                                 <  2:141039/238‑1 (MQ=255)
                                                   aaTTTCCGGGG‑AAATGGGGAAAACCGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCGTGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGt                                                                                                                                                                                 <  1:125337/238‑1 (MQ=255)
                                                    aattgccggggaatgtgttaacaCTGCCTGGGGGGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCCCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGt                                                                                                                                                                                 <  1:404910/216‑1 (MQ=255)
                                                                  tGCTGAAACCTCCCTGGCGAGGAAATTTCCGTC‑GC‑TTGCGGGCTTTTAACGGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTCCTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTgcg                                                                                                                                                                  <  2:256101/239‑1 (MQ=255)
                                                                       aaatCTCCCTGGGGAGGAACCTTCCGCG‑TC‑TTGCTGGCGCTTACCCGCGATATCATGCGGCGTTCGCTGTTGTTGCAACTTGGTTTCGGCGCGATCCCCGTGCTTGGCGCGCGTCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTCCTCC‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGa                                                                                                                                                             <  2:279473/239‑1 (MQ=255)
                                                                              ccTGGCGGGGAAACTGCTGTT‑GC‑TTGGTGGCGCTTAACCGCGATCTCAGGGTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGGGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGc                                                                                                                                                      <  2:1079319/239‑1 (MQ=255)
                                                                               cctgggggggaaCTTCCCTT‑GCTTTGCTGGCGCTTAACCGCGAATTCATGTGGGGTTCGCTGTTGTTGCACCTTTGTTTCGGCGCGATCACCGTACTTGGCGCGCGCCTGGGGAGTGACATTATCGTTGTTAACGCGGTTCTGATGACGCTACTCC‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGc                                                                                                                                                      <  2:747852/229‑1 (MQ=255)
                                                                               cTGGCGAGGAACTTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGc                                                                                                                                                      <  1:729112/238‑1 (MQ=255)
                                                                                gggCGGGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCa                                                                                                                                                    <  1:546030/238‑1 (MQ=255)
                                                                                          tcTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGAt                                                                                                                                          <  1:255447/238‑1 (MQ=255)
                                                                                                     c‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCgg                                                                                                                                 >  1:236708/1‑238 (MQ=255)
                                                                                                        tGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGGTAACGCGGTTCTGATGACGCAACTCA‑CCTTTACCGCCTATGCGCTGGATGTTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGCCATACGGTGCGCGCGCAGGTGTCCAGTTGCTGCATGTCTGGAggca                                                                                                                               >  2:33128/1‑236 (MQ=255)
                                                                                                                 ttAACCGCGTTATCATGCTGCGTTCGCTGTTGTTCCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTgccgc                                                                                                                     <  1:793140/239‑1 (MQ=255)
                                                                                                                   aaCCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGAGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACGGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGACGTGCACTCCGGTCAGGCATACGGTTCGCGCGGCGGTAGCCAGGTGCTGGATGTCTGTCGGGCAGCGGgcgtccc                                                                                                                   >  1:651182/1‑234 (MQ=255)
                                                                                                                    cccgcgtttttctgctgcGTTCGGTTTTGTTGCAACTTTTTTCCGGGTGCATCCCCGTACTTGGGGCGGGATTGGGGAGGACCATTATCGCGGTTAACGGGGTTTTGATGACGCTACCCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAg                                                                                                                  <  2:1017130/227‑1 (MQ=255)
                                                                                                                                     cGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCTGGTCAGGCATACGTTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGTCGGGCAGCGTGCCGGCAGCCGGGGATCGTAGCGt                                                                                                  >  1:660426/1‑238 (MQ=255)
                                                                                                                                     cGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGGGCCGCCCGTCGGGGGTCGTAGCGtt                                                                                                 >  2:604451/1‑239 (MQ=255)
                                                                                                                                     cGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCCGGGGGGCAGAGGgccgcccacgggggggcggggggtt                                                                                                 >  2:414393/1‑220 (MQ=255)
                                                                                                                                     cGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGGGCGCGCGCCGGTAGCCAGTTGCTGGATGTCTGGCGGTCAGCGTGCCGCAGGTCGGGGTGCGTAggggt                                                                                                 >  1:965153/1‑235 (MQ=255)
                                                                                                                                       ttCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGt                                                                                                                                                                                 >  2:24410/1‑157 (MQ=255)
                                                                                                                                       ttCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGt                                                                                                                                                                                 <  1:24410/157‑1 (MQ=255)
                                                                                                                                       ttCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGtt                                                                                                 >  1:322391/1‑237 (MQ=255)
                                                                                                                                       ttCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCCCGACGGTAGCCAGTTGCTGGATGTCTGGGGGGCGGCGGGCCCCCAGCCGGGGGCGGTAGGGTTAc                                                                                               >  2:639086/1‑239 (MQ=255)
                                                                                                                                               tgttgCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCCCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGGTCGCCCGCCGGTAGCCAGTTGCTGGCGGCCTGGCGGGCAGCGGGCGCCCAGCCGGGGACCGtgccggtatgtgtttcg                                                                                       >  2:778751/1‑223 (MQ=255)
                                                                                                                                                      aCTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGGGTTACTGTTTTCGGGGGttt                                                                                >  1:971498/1‑239 (MQ=255)
                                                                                                                                                        tctGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGGGGTTTAt                                                                              >  1:559310/1‑239 (MQ=255)
                                                                                                                                                          tGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGGGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGGGCCGCCAGTCGGGGATCGCAGCGTTACTGTTTTCGGGGGGTTAttt                                                                            >  2:181244/1‑239 (MQ=255)
                                                                                                                                                               cGGCGCGATCACCGTTTGTGGCGGGGGGGTGGGGGGGTAAATTTGCGGTTTTAACGGGGTTTTGATGGCCTTTCTCC‑CCTTTCCCGCCTATGCGCTGGATGGTTGTGCCTACGCGGTTGAAGCGCACTCGGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTgctgg                                                                       <  2:236708/239‑1 (MQ=255)
                                                                                                                                                                 gcgcGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTactg                                                                        >  1:162/1‑236 (MQ=255)
                                                                                                                                                                  cgcgATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTGGGGGGGTTATTTtctgcctg                                                                    >  1:463166/1‑239 (MQ=255)
                                                                                                                                                                   gcgcaccccgttttgggCGCGGGATGGGGGTGTGACTTTGCCGCTGTTACCGGGGTTCTGAGGACGTTACTCA‑CCTTTCCCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTgctggctg                                                                    <  2:971498/223‑1 (MQ=255)
                                                                                                                                                                      aTCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGa                                                                >  2:184216/1‑239 (MQ=255)
                                                                                                                                                                        ctcctttcTTGGCGCGGGATTGGGGAGTGACATTAGCGCTGTTAACGGGTTTCTGATGACGTTTCTCC‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAac                                                              <  1:286587/232‑1 (MQ=255)
                                                                                                                                                                        cACCGTACTTGGCGCGCGACTGGGGATGGACATTATCGTTGTTAACGCGGTTCTGATGACGCTACTCC‑CCTTTCCCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGCAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAac                                                              <  1:181244/239‑1 (MQ=255)
                                                                                                                                                                                  ggCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCCGTTGCTGGATGTCTGCCGGGCCGCGGGCCGCCAGTCGGGGACCTGAGCGTTACTGTTTTCGGGGGTTTTTTTGTTGGGTGGGGAaccaaccatttc                                                    >  2:783840/1‑229 (MQ=255)
                                                                                                                                                                                  ggCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGGTTATTTGCTGGCTGGGGAACACATCCTTGc                                                    >  1:846855/1‑239 (MQ=255)
                                                                                                                                                                                     gcgcgACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGGGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACCCATATTTGCGtt                                                 >  1:1011554/1‑239 (MQ=255)
                                                                                                                                                                                       gcgACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGGGCGGCCAGCCGGGGACCGAGGCGTGAATTTTTTCGGGGGGTTTTTTTTTGGCTGGGGGATACATCATTCGGTTat                                               >  2:812984/1‑238 (MQ=255)
                                                                                                                                                                                         gACTGGGGAGTTCATTTATCGCTTTTAACGCGTTTCTGATGACGCT‑CACACCCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTa                                                <  1:525291/236‑1 (MQ=255)
                                                                                                                                                                                                  agtgcttttccGCTTTTACCGCGGTTTGGGTCGCTCTACCCC‑CCTTTCCCGCCTATGCGCGGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGtt                                     <  1:812984/228‑1 (MQ=255)
                                                                                                                                                                                                   tGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAg                                                                                                                                                   >  2:336948/1‑127 (MQ=255)
                                                                                                                                                                                                   tGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAg                                                                                                                                                   <  1:336948/127‑1 (MQ=255)
                                                                                                                                                                                                   tGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGGGGTTTTTTTGCTGGCTGGGGAACACACCATTGCGTTACTGAcggcggtgt                                   >  2:525291/1‑235 (MQ=255)
                                                                                                                                                                                                   tGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGGGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGATGTCGTTa                                    >  1:697750/1‑238 (MQ=255)
                                                                                                                                                                                                   tGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGGGCCGCCCGACGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGGAGACACCATTGCGGTTCTGACGGCGttca                                   >  2:818961/1‑237 (MQ=255)
                                                                                                                                                                                                     aCATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCGGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACAGTTTTCGGTGGGTTATTTTCTGGCTGGGGAACACATCATTGAGTTCCTGACCGCGTGAAcc                                 >  2:892700/1‑239 (MQ=255)
                                                                                                                                                                                                       tttaccgtttgtAACGGGGTTCTGATGGCGCTAACCC‑CCTTTACCGCCTATGCGGTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAAccc                                <  1:667601/227‑1 (MQ=255)
                                                                                                                                                                                                           tCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGtt                                                                                                                                                                                                              >  1:585788/1‑60 (MQ=255)
                                                                                                                                                                                                           tCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGtt                                                                                                                                                                                                              <  2:585788/60‑1 (MQ=255)
                                                                                                                                                                                                                gtaacctgggTTCTGATTAGCCTTCCCC‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTcagca                      <  1:642139/231‑1 (MQ=255)
                                                                                                                                                                                                                 ttAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACGGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGCCGTCGTTAACCCAGATTcagcag                     >  1:722588/1‑239 (MQ=255)
                                                                                                                                                                                                                        gtttCTGATGACGCTAATCA‑CTTTTACCGCCTAGGGGCTGGAGGGTTTTGCCTACGGGGTTGAAGCGCCCCCCGGTAAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctggct               <  1:67225/236‑1 (MQ=255)
                                                                                                                                                                                                                        ggTTCGGATGACGCTTCCCC‑CCTTTACCGCCTATGCGCTGGATGGTTTGGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctggct               <  1:591731/238‑1 (MQ=255)
                                                                                                                                                                                                                         gTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGCACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAcgtggctg              >  1:1042221/1‑238 (MQ=255)
                                                                                                                                                                                                                           tCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCg                                                                                                        >  2:709719/1‑146 (MQ=255)
                                                                                                                                                                                                                           tCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCg                                                                                                        <  1:709719/146‑1 (MQ=255)
                                                                                                                                                                                                                                    gCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGc                                                                                                                                                      <  2:82601/91‑1 (MQ=255)
                                                                                                                                                                                                                                    gCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGc                                                                                                                                                      >  1:82601/1‑91 (MQ=255)
                                                                                                                                                                                                                                    gCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGCCGTCGTTAACCCAGATTCCACAGACGGCTGACCGCtctctta  >  2:162182/1‑239 (MQ=255)
                                                                                                                                                                                                                                    gCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatctta  >  1:599026/1‑239 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        
ACATTGCTGATTGGTCTGCTAATGGTGCGTAAAATCCTCAAACT‑ACGCGGAATTTCCGGCG‑AAATGCTGAAAACTGCCTGGCGAGGAAACTTCCGTC‑GC‑TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCA‑CCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACGCGGTTGAAGCGCACTCCGGTCAGGCATACGGTGCGCGCGACGGTAGCCAGTTGCTGGATGTCTGGCGGGCAGCGTGCCGCCAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTA  >  NC_000913/4258395‑4258857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A