Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F17 I0 R1
|
160 |
98.0 |
2214160 |
89.0% |
1970602 |
222.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
653,049 |
T→G |
21.0% |
V272G (GTG→GGG) |
citA → |
sensory histidine kinase in two‑component regulatory system with CitB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 653,049 | 0 | T | G | 21.0%
| 122.3
/ 2.6
| 67 | V272G (GTG→GGG) | citA | sensory histidine kinase in two‑component regulatory system with CitB |
| Reads supporting (aligned to +/- strand): ref base T (32/18); new base G (10/6); total (43/24) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCATCTCAA > NC_000913/652813‑653286
|
tCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAgggg > 1:712772/1‑239 (MQ=255)
tCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCCGGGGCTGAGTTCACCCAGACGGCAATGGTTGGGAAAACCAATTGTGGAAgggg > 2:655455/1‑239 (MQ=255)
ttGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGc > 1:417537/1‑238 (MQ=255)
ttGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACACGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCGGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCCGAGTTCCCCCGGCCGGCAATGGTTGGGTAAACCCATTGTTGAAAGGGTAA‑GGc > 2:218625/1‑238 (MQ=255)
tGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCACAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCCATGGTTGGGTAAACCCCTTGTTG‑AGGGGTGACGGCCCGCCGCTTTTTTTaac > 2:44401/1‑237 (MQ=255)
tGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCGGGGGGTGAGTTCCCCCGGACGACAATGGTTGGGAAAAACCATTGTTGAAGTGGTTG‑GGCCCGCCGCTTCTTTTAcg > 2:222583/1‑238 (MQ=255)
cgcgCATACCCGTCGGAAGTTGAGGGGCAGGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGaa < 1:284784/238‑1 (MQ=255)
gcgcATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAGGGGGTCA‑GGCCCGCCGATTTCTTTAGCggaaa > 2:530208/1‑235 (MQ=255)
gcgcATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACa > 1:547047/1‑239 (MQ=255)
cgcATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGCTTAGTTGGGTTTATGAAGGGCTGATTGCGGGGGATCCGCACGTTTACATTACAGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGCAGCAAATGGATGGGGAAACCCATTTGTAAAGAGGTCA‑GGCCCCCGGCTTTTTTTACCGaaaaa > 2:349099/1‑236 (MQ=255)
ctgatgGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGGTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCCAGAAAGATGCTGCGGCTGGGTTCCCCCGGACGGCACTGGTAGGGTAAAACCATTGTTGAAGGGGTAA‑GGCCCGCCGATTTCTTTACCGAAAAAATAGATGaaaaagataa > 2:1001341/2‑234 (MQ=255)
atgatgGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGAGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCGGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGACCGGATTGATGAAAAACGTCa > 1:616327/1‑239 (MQ=255)
gggCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGCTTTCTTTACCGAACAGATTGTTGAAAAACGCCAGGCtg > 1:955750/1‑239 (MQ=255)
gcaaaaGCAAACCGCACGCGTGGGCCGTCAGCAAGGGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATGGGGGTGGTCCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCg < 1:900595/235‑1 (MQ=255)
aaaCCGCACGGGGGGCCCGTCAGCAAGGGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCGGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATATGGTGGCGAACTTTa < 1:218625/237‑1 (MQ=255)
aaTCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACg > 1:387058/1‑239 (MQ=255)
tgccgcgggTGGTCGGTCAGGAAGAGGGGCTGTTTGGTTCGTTTTAAGGAGGGCGGGTTGGGGGAGATCCGCTGGGTTAGTTTACCGCCGT‑TAGTCGTAGCGCAAGAAAGTTGGTGGGGTTGGGTCCCCCGGGAGGGCAATGGTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGt < 2:176181/231‑1 (MQ=255)
tcccACGCGTGGTCGGTCAGCAAGAGGCGCTGTTTAGTCGGGTTTATAAAGGTCTGATTGCGGTGGATCCGCATGGTTACATGTCCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAACCCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGGCAGGATGTGGTGGCGAACTTTAACGGt < 1:503516/236‑1 (MQ=255)
cgcgTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTAGTGAAAAACGTCAGGATGTGGGGGGGAACTTTAACGGTCTGAg > 1:514066/1‑239 (MQ=255)
gcgTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTTCCGACAAAATTGATAAAAAACGTCAGGAGGGGGTGGCGAACTTAAAGGGTcgaagg > 2:503516/1‑234 (MQ=255)
tCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGACCAGATTGATGAAAAACGTCAGGTGTTGGTGGCGAACTTTAACGGACTAAGCGTTATTGC‑Ca > 1:417681/1‑239 (MQ=255)
agagGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCCGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTTTTGC‑CAACCggg > 1:824523/1‑239 (MQ=255)
cTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTAt > 1:492816/1‑239 (MQ=255)
tttttttttggttttATAGAGGGCTGATGGGGGGGGTCCCGGAGGGTACAATTCCCGCCAA‑CAAGCGAAACGCAAGAAAGATGGGGGGGTTGGGTTCCCCGGGCCGGAATTGGTGGGGTAAACCCATTGTGGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTAt < 2:387058/226‑1 (MQ=255)
tGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGGTGAAAAACGTCAGGATGTGGTGGCCAACTTTAACGGCCTGAGCGTTATTTC‑CAACCGGGAAgacaa > 2:83733/1‑234 (MQ=255)
tAGTTCGGTTTAAGAAGGTCTGTTTGGGGTGGACCCGAATGGTTCAATTACCGCCAT‑CAATCGAAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGtt < 1:530208/239‑1 (MQ=255)
cGGTTTATGAAGGGTTGAGTGGGGTGGTCCCGCATGGTTACATTACCGCCAT‑CAAGCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCATTGTGTGGGTAACCCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGt < 1:218396/239‑1 (MQ=255)
tttATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGtgat > 1:606379/1‑239 (MQ=255)
tttATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAATTCCCCCGGACGGCAATGGTGGGGAAAAACCATTGTTGAGGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGACAAACGTCGGGCAGTGGTGGCGAACTTTAAAGGAGTAAGCGGTATTGC‑CAACCGGGAGGCAACTAGTTTAgatgat > 2:29588/1‑239 (MQ=255)
tttATGAAGGGCTGATTGCGGTGGATCCGCATGGTTAAATTACCGCCAT‑CAATCGTACCGCAAGAAAAATGCTGGGGCTTAGTTCCCCAGGACGGCAATGGTTGGGTAAACCCATAGTTGCAGGGGCCA‑GGCCCGCCAATTCTTTTACCGAACAGCTTGTTGCAAAACGTACGGATGTGGTGTCGAACTTTAAGTGTCTGCACATTATTAC‑CAACCCGGACGCAATTCGGTCGGGtggt > 2:507655/1‑237 (MQ=255)
gAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGGTAAGGGGAT‑GAttt > 2:11572/1‑239 (MQ=255)
ggCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAATGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGTTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCCGGTGTTGGGGGCGAAATTTAACGGTATGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGGT‑GGttggtgg > 2:656093/1‑234 (MQ=255)
gCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAGTCGTAACGCAAGAAAGGTGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGGAAACCCATTTTTGAAGGGGTCA‑GGCCCGCCAATTTCTTTACCGAACAGATGTATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGCTGGGGCGTTATTGC‑CAACCGTGAAGCCTTTCGTGCAGGTGAT‑GATTTgtggg > 2:843488/1‑235 (MQ=255)
gCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGGGCGTTATTGC‑CAACCGGGAAGCTATTCGTTTAGGGGAT‑GATTTGCTgg > 2:716386/1‑239 (MQ=255)
aTTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGAT‑GATTTGCTggggg > 1:96983/1‑238 (MQ=255)
tggtgggggATCCGGTTTGTTTCATTTCCCCCATGCAAGTGTAACCTAGGAATGGAGCTGGGGCCGGTTTCCCCCGGACGGAAATGGTTGGGTAAACCGATTGTGGAGGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGc < 2:616327/232‑1 (MQ=255)
aaccGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCAGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGCGGTGGTGGCGCCCTTTAACGGTCTGAGCGTTATTGC‑CCACCGGGGAGCACTTCGTTACGGTGAT‑GATTTTCTGGGGGCCATTAtaa > 2:765198/3‑235 (MQ=255)
gTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGACCAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGGCTGAGCGTTATTGC‑AAACCGGGAAGCTATTAGGTCAGGTGAG‑GTTTTGTTGGGGGCCATTATCAGC‑tttgtaggt > 2:691453/1‑233 (MQ=255)
cATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAg > 1:832949/1‑239 (MQ=255)
tACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGCT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACg > 1:484024/1‑239 (MQ=255)
cGCCAT‑CACCCGTAACGCAAGACAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGTGTGGGTAAACCCATTGTTGCAGGGGTCC‑GGCCCCCCGATTTCTTTACCGAACAGATTGTTGAAAAACACCGGGATG‑GGTGGTCGACTTTTAAGGACCGGGGGTTTATGCACAACCGGGAAGATATTC‑ATCCGGGGATGGATTTGC‑GGGGGGCACTGTCAGCAGTTGGTAGAAAAGAGGaaa > 2:1029196/1‑239 (MQ=255)
cGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGaaa < 1:44401/239‑1 (MQ=255)
gCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGGAGCTATTCGTTCAGGGGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTGGTAAAGCCGAAAt > 1:549944/1‑239 (MQ=255)
aT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCAATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGAT‑GTTTTGCTGTGGGCCATTATCGTG‑TTTGCTATTAAAAACGAAAttt > 2:227084/1‑238 (MQ=255)
t‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGCCGAAATTTc > 1:835742/1‑238 (MQ=255)
cGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGCTGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCt > 2:595992/1‑239 (MQ=255)
cgaaagaaagaTGTTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAACCCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATg < 1:929341/236‑1 (MQ=255)
gaaagaTGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCa > 1:344203/1‑238 (MQ=255)
tgttGGGGCTTGTTTCCCCCGGGCGGAATTGGTTGGGTAAACCCGTTGTAGAAGGGGTAA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGAc < 2:96983/235‑1 (MQ=255)
gtttgttccccccGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATa < 1:655455/230‑1 (MQ=255)
gtcgtcattttttGGGTAACCCCTTTTTTGAGGTGGTCA‑GGCCCGTCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGGGGTTGCTAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTgag < 2:514066/228‑1 (MQ=255)
gACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTAt < 1:554037/169‑1 (MQ=255)
gACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGATGGGGGCCATTAt > 2:554037/1‑169 (MQ=255)
aCGGCATTGGTTGGGTAACCCCATTTTTAATGTGGCCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGGCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGTAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTgag < 1:545622/238‑1 (MQ=255)
aCGGCAATGGTTGGGTAAACCCATTTTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTgag < 1:691453/238‑1 (MQ=255)
tgtattGGTTGAGTAAACCTTTTTTTGAA‑TGGGCACGCCCCTCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGagag < 2:835742/233‑1 (MQ=255)
gtaaagggTTGGGTAAACCCATTGTTGAA‑TGGGCAGGGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGagag < 1:1001341/232‑1 (MQ=255)
cccATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGc‑c < 1:528258/102‑1 (MQ=255)
cccATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGc‑c > 2:528258/1‑102 (MQ=255)
ccATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGacac > 1:108207/1‑239 (MQ=255)
ggttgttgAATTGGCCA‑GCCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCGCCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACg < 1:519164/237‑1 (MQ=255)
ttttagAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAg < 1:716386/234‑1 (MQ=255)
tgttgAAGTGTTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGCGCGGTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGCT‑GATTTGCTAGGGTCCATTATCCGC‑TTTCGTAGTAAAAGCGAAATTTCCACCATCAATGCGTAACTTACGCACATAAAACAAAAAGATAAGACCCTTCGTACTTTGCGccaataca > 2:945858/1‑234 (MQ=255)
tgttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGCGAGCCTTCTTCCATTGCGACACGAGc > 1:767929/1‑239 (MQ=255)
tgttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACCCGAGc > 1:293664/1‑239 (MQ=255)
tgttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGACCCTTCGTCCATTTGGACACGAg > 1:398278/1‑238 (MQ=255)
ttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCAt < 1:11572/239‑1 (MQ=255)
tgaaaGTGTTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCAt < 1:227084/236‑1 (MQ=255)
gTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGCCGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAACAAAAACGTTGAGAGCCTTCGTACATAGCGACCCGAGccacacaa > 2:267598/1‑232 (MQ=255)
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TCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCATCTCAA > NC_000913/652813‑653286
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
