Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F17 I0 R1
|
160 |
98.0 |
2214160 |
89.0% |
1970602 |
222.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,747,279 |
C→A |
15.4% |
S50* (TCA→TAA) |
ydhS → |
putative oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,747,279 | 0 | C | A | 15.4%
| 227.4
/ 6.7
| 85 | S50* (TCA→TAA) | ydhS | putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (49/21); new base A (2/12); total (52/33) |
| Fisher's exact test for biased strand distribution p-value = 1.52e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGTCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTATGAA > NC_000913/1747045‑1747514
|
tGTCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑aaaa > 1:436617/1‑239 (MQ=255)
tCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGCTGCCATACAGTGATGAGGAAAACTC‑AAAAat > 1:200188/1‑239 (MQ=255)
tCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAat > 1:598569/1‑239 (MQ=255)
ccTGAAATTTATCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGCAAGTAACAATGAAAAAACTTGCTATTGTGGATGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTCAACCAACAAACCCCACTTTCTAGTTCCATCTTCGAGCCGGCTGACCAGCCCGGGATCGGGCTGCCGAACAGTAATTAGGGAAAAAC‑aaaaag > 2:608391/2‑238 (MQ=255)
aaaTTTCTCAAATTTTAAAAATCCCAACCAAACTTATCGGAAAACCC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:598569/239‑1 (MQ=255)
aaaTTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACCCCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:906328/239‑1 (MQ=255)
aaaTTTCTCAAATTCATAAAATCTCAACCAAACCTATCTGATAACAA‑TAAATGCGGAAGGATGCGTACAGGTAAGGAACAATGAAAAAAATTGCTATTGTGCGTGCCGGGCCGACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:174990/239‑1 (MQ=255)
aaaTTTCTCAAATTATAAAAATCTCAACCAAACTTATATGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:961711/239‑1 (MQ=255)
ttCTCAAATTCTAAAAATTCCAACCAAACTTATCTGATAACAC‑TAAAATCGAAAGAAGGCGTACAGGTAAGTAACAATGAAAAAAAGTGCAATTGTGGGTGCCGGGCCTGCGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTgg < 2:1009244/239‑1 (MQ=255)
ttCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCTCTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTgg < 1:108419/239‑1 (MQ=255)
ctcAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGAACAGGCAAGTAACAATGAAAAACAGTGCTATTATTGTAGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTCTTTCTCATTTTGACCAGGCTAACGAGGCCGGAGTCGGGGTGCCATACAGTGAGAATGAAAACTC‑caacaataggcacgca > 1:65735/1‑226 (MQ=255)
ttAAAAATCTCAACCAACTTTATCTTAAAAAAC‑AAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGCGGGTGCCGGGCCTACGGGGATCTACACCGTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGACTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc < 2:457788/238‑1 (MQ=255)
caaaaaaTCTCAACCAAACTTATCTGATAACCC‑TAAATTCGAAAGAATGCTTACAGGGAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc < 1:193657/237‑1 (MQ=255)
aCTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTA‑AAAAATGATGCTGGCAAATATAGCCAGTATTGAAATAacgc > 2:483707/1‑239 (MQ=255)
atgtaaTAACAC‑AAAATTCGAAAAAATGCGTACAGGTAAATAACAATGAAAAAAATTTCTATTGTGGGTGCCGGGCCTACGGGGATCTTCACCTTATTCTCGCTTCTACAGCAACAAACTCCTCTTTCTATTTCTATCTTCGGGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGAt < 1:834498/234‑1 (MQ=255)
aTCTGA‑AACACTTAAATTCGAAATTAGGGTTACAGGTAAGAAAAAAGGAAAAAAATTCCTTGGGTGGGTCCCGGGCCTACTGGGATCTAACCCTTATTCCCGCTTCTACAGCAACAAACTCCACTTGCTATTGCTATCTTCGAGCAGGCTGACGAGGCCGGGGTCGGGATGCCATACAGTGATGAGGAAAACTA‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGAt < 2:436617/239‑1 (MQ=255)
tAAATTCGACAGATTGCGTACAGGTAAGTAACAATGAAAAAAATTGATATTGTGGGTGCCGGGCCAACGGGGATCTACACCTTATTCTCGCTTTTACAACAACAAACTCCACTTTCTTTTTCTTTATTCGAGCAGGCTGACGCGGCCGGTGCCGGGATTCCCTACCGTGATGAGGAAAACTC‑ACAATTAATGCTGGCCAAGATAGCCAGTTTTTAAAAAACACGAATTTATTgaaagaa > 2:507350/1‑233 (MQ=255)
aaaTTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGGGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGAGGCTGGCAAATATTGCAAGGATTGAAAAACCGCCGaatatttttacgaa > 2:957469/1‑225 (MQ=255)
aaaGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTCAACG‑TATCTCGAAt > 1:946557/1‑239 (MQ=255)
aaaGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGGGATGAGGAAAACTC‑AAAAATAATGCTGGCAAAAATTTCCAGAATTGAAATACCGCCAATTAATTGAAAG‑TATCCCGaaa > 2:1034055/1‑238 (MQ=255)
gCGTACAGTTAAGAAAAAATAAAAAAATTTTCTATTGTGGGTGCCGGCCCTACGGGGATTTACCCCTTATCCTCGCTTCTACACCAACAAACTCCCCTTTCTTTTTCTATCTCCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCAATACAGTGATGAGGAAAACTC‑AAAAATGAGGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACa < 2:338869/239‑1 (MQ=255)
ggTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTTTCCG‑ATTTCCGAATGGCTCAAAAAGaaa > 2:859052/1‑239 (MQ=255)
agtaaCAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATAAGGAACACTC‑AAAAATGATGCTGGCAAATATTGTCAGTATGTAAATAACGCCGATTTATTGTACG‑TATCTCGAAGAGCTCAAAAAACaaa‑aag > 2:981886/1‑239 (MQ=255)
aaTAAAAAAATTTGCTATTGTGGGTGCCGGGCTTAGGGGGTTCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGcc < 1:419729/239‑1 (MQ=255)
aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTCTTTCTATCTTCGAGCAGGCTGCCGAGGCCGGTGTCGGGCTGCCATACAGTGCTGAGGGAAACTA‑CAAAATGATGCTGGCAAATATTGCCAGTATTGACATACAGCCGGTTTATTGTACG‑TATCTTGAATggaacaaaaatcaaaagaaaagcac > 2:166805/1‑216 (MQ=255)
aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAGCTC‑AAAAAGTATGCTTGCAAATGTTCCCAGGATTGGAATACCCCCGACTAATTGAACG‑TAACTCGAATGGGCACAAAAAAaag‑aaaaaaacac > 2:834051/1‑231 (MQ=255)
aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑GATCTCGAATGGCAACAAAAACAAA‑AAGAAAGCCa > 2:854710/1‑239 (MQ=255)
aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTACACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGAGTCGGGATGCCATACAGTGATGAGGCAAAATC‑AAAAATGTTGCTCGCAACAATTGCCAGTATCTATAAAACGCAGATTTATTGTACGCTATC‑CGAATGCCTACaaacacaaaaactaagtc > 2:985523/1‑223 (MQ=255)
gAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGCGGCCGGAGTCGGGATGCCATACAGGGATGAGGAAAACTC‑AAAAATGATGCTGGCAAAAATTGCCAGAATTGAAATACCGCCGATTTATTTTACT‑AATCCCGAATGGCAACAAAAGCaaa‑aaaaaaacaaac > 2:965551/1‑229 (MQ=255)
aaaaaTTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAAACAACCATCTcc > 1:890824/1‑239 (MQ=255)
gCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGaa > 1:698940/1‑238 (MQ=255)
ccTACGGGGTTCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCa < 1:997901/197‑1 (MQ=255)
ccTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCa > 2:997901/1‑197 (MQ=255)
cGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACCGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCACGAATGCACACAAAAACAAA‑TAGAAACCCATCCACACCTT‑AATGGCTGATaaaaaaaaaaatca > 2:970857/1‑235 (MQ=255)
cacCTTATTCTCGCTTCTACAGCAACCAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTAGGGATGCCATACAGTGATGAGGAAAACTT‑AAAAATGATGCTGGCTACTATTGTCAGTATTGAACTACCGCCGATTTATTTTACG‑TATCGCAAATAGCTACAGAAGCAAG‑AAGACAGCCAACACCAGCGT‑TCTGGC‑GTTAAAAAAGAAAACTCGCCCGGTctgc > 2:583282/1‑236 (MQ=255)
tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGCTGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTCCCAGCATTGAAATACCGCCGATTTATGGTACG‑TATCTCGAAAGGCCACCACAGCAAGAAAGAC‑GCCGATTCCA‑CGTCTAAGGC‑TGTAAAAAAGAAACCTTGCACGAATGACAGttt > 2:272514/1‑239 (MQ=255)
tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATTCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCCGCATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGTCTACAAAAGAAAA‑AAGACAGCAATCTACAGCGT‑TATTGC‑ATTAAAAAAGAAACCATTCACGaacaaaagcgt > 2:822447/1‑229 (MQ=255)
tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg > 1:24231/1‑110 (MQ=255)
tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:24231/110‑1 (MQ=255)
tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc > 2:578043/1‑124 (MQ=255)
tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc < 1:578043/124‑1 (MQ=255)
tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑CATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTcgattt > 1:664386/1‑234 (MQ=255)
ttCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGttttt > 1:449477/1‑239 (MQ=255)
tcGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTAc > 1:810371/1‑238 (MQ=255)
ccctttCCACACCAAAAACCCCCCCTTTCTATTTTTCTTTGCGAGCAGGCTGAGGAGGCGGGTGGGGGGATGCCATACAGTGATGAGGAAACCTA‑AAAAATGATGCTGGTAAATATTGCAAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTAcc < 2:810371/235‑1 (MQ=255)
cTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACcccg > 1:850343/1‑239 (MQ=255)
acaaACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACGAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGAACGTCAGTTTTTACCGCGAATTCTGCTgg > 1:57569/1‑239 (MQ=255)
tCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCGTCTGGGCGAat > 1:375736/1‑239 (MQ=255)
cACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGCAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTCCAAAAGCAAG‑AAGACAGCCATCTCCAACGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGGTTTTACCGCGAATTTTGCTGGGGGacaat > 2:229785/1‑235 (MQ=255)
tctatttctatCTTCGAGCAGGCTGACGAGGCCGGTGCCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGAAAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAACAAAACATTGCACGCTCGTAAGTTTTTTCCGCAAATTCTGCGGGTGGAAAATTTCcg > 2:871101/1‑239 (MQ=255)
tattcctattccgggccAGGCTACCGGGGCCGGTGTGGGGATTCCATCAAGGGATGAGGAAACCCA‑AAAAATGATGCTGGCAAATATTGCCATTATGGAAATTCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCcgcg < 1:802112/223‑1 (MQ=255)
atttctatCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCCCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTACACAAACGTAAGTTTTTACCGCGAATTCTCCTGGGCGAAAATTTCcacg > 2:841406/1‑238 (MQ=255)
ctatCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCAtctc > 2:727118/1‑155 (MQ=255)
ctatCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCAtctc < 1:727118/155‑1 (MQ=255)
tCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAGACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTAAAAAAGCAAG‑AAGACACACATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGCTCGTCAGTTTTTACCGCGCATTCTGCCGGACGGAAATTTCCCCGACAAAttt > 2:1066140/1‑239 (MQ=255)
tCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAAAATTGCACGATCGTCAGTTTTTACCCAGCATTCTGCTGGGGCACATTTTCCGGGATAAAttt > 2:802112/1‑239 (MQ=255)
tCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAAAAAACTTGCACGATCGTCAGTTTTTACCGCGAATTTTGCTGGGCGAAAAtttaccgaacaaattt > 2:183211/1‑226 (MQ=255)
ttCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCACttttt > 1:139004/1‑239 (MQ=255)
ggggccggCTGACGAGGCCGGTGTCGGAATGCCAAAAAGTGATGAGGAAAACTA‑AAAAATGATGCTGGCAAATTTTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTAc < 1:859052/233‑1 (MQ=255)
ggagaAGGCGGACGGGGCCGGTGGGGGGATGCCATCAAGTGAGGATGAAACCCA‑AAAAATGATGCGGGCAAATATTGCCAGTATTGAAATCCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTAc < 1:841406/238‑1 (MQ=255)
cgggCTGTCGAGCGCGTTGTCGGGATGCCATACAGGGAGGAGGAAGACTA‑AAAAATGATGCGGGCAAATATTGCCGGTATGGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGAc < 1:1066140/236‑1 (MQ=255)
gCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGGGAATATTTCCGCGATCAATTTTTACGACtagt > 1:190354/1‑239 (MQ=255)
gttaCGGGGCCGGTTGCGGGATCCCAAAAAGGAGAGGGGAAACCTA‑AAAAATGATGCTGGAAAATATGGCCATTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACtag < 1:1034055/234‑1 (MQ=255)
cTGACGAGGGCGGGGTGGGGTTGTCAAAAAGTGTAGAGAAAAACCC‑AAAAATGAGTGGGGAAAAGTTTGCCAGGAATGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACta < 2:807274/236‑1 (MQ=255)
ataaCGGGGCCGGTTGCGGGATGCAAGAAAGTAAAGAGAAAACCCC‑AAAAATGGTGTCGGCAAATATTGCCAGTATTAAAATCCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACtag < 1:323788/234‑1 (MQ=255)
ccGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGc > 1:318864/1‑238 (MQ=255)
tggggaacccATAAAGTTATGAGAAAAACTA‑AAAAAGGTGTGGGGCAAATATTGCCAGTATTAAAACTCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAg < 2:698940/231‑1 (MQ=255)
ccATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTCCTGGGCGAATATTTCCGCGATCAATTTTTACGATTAGTAGACCAGGCACGACAGCAAAAAtt > 1:758192/1‑239 (MQ=255)
aaaggataaGAAAATCTA‑AAAAATGTTCCTGGAAATTATGCCCTTTATTGAACACCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAg < 2:250057/235‑1 (MQ=255)
tgatgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACa > 1:671839/1‑87 (MQ=255)
tgatgaGGAAAACTC‑AAAAATGATGCTGGAAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACa < 2:671839/87‑1 (MQ=255)
ggatgaGGAAACCTA‑AAAAATGATGCTGGCAATTATTGCCATGATTGAAATACCGTCGATTTATTGCACG‑TATCTAGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTgg < 1:826305/238‑1 (MQ=255)
tatgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTgg < 1:229785/237‑1 (MQ=255)
gaagaGGAAAACCA‑AAAAAGGAGTCTGAAAAATATGGCCAGTATTGAAATCCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTgg < 1:1085394/235‑1 (MQ=255)
gttgagAAAACACAAAAAATTATGGAGGAAAATTTTGCAAGTTTTAAAAACCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGGAAG‑AAGACAGCCATCCCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGc < 2:318864/234‑1 (MQ=255)
atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGCCCAGGCACGACGGCAAAAATTTGCAGTGGcg > 1:123640/1‑238 (MQ=255)
atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAggg > 1:957394/1‑234 (MQ=255)
atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTg > 1:926281/1‑236 (MQ=255)
atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAA‑AAGACACCCATCTCCAGCGT‑TATGTC‑GTTAACAAAGAAACCTTGCACGGTAGTCAGGTTTTACGGCGAATTTTGCTTTGGAGATATTTCCTAAACAAATTTTTACGACTATAAGACCAGGCACGACGGCAAAAGTTTgaaagggcg > 2:826305/1‑231 (MQ=255)
aGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATAccg > 2:1094563/1‑50 (MQ=255)
aGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGtt > 1:659723/1‑239 (MQ=255)
aGGAAAACTC‑AAAAAGGATGCTGGCAAATATTGCCAGTATTGAAATAccg < 1:1094563/50‑1 (MQ=255)
aaaaCCA‑AAAAATGAAGCTGGAAAATATTGCAAAGATTGAAATTCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTa < 1:483707/238‑1 (MQ=255)
cTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTa > 1:250057/1‑234 (MQ=255)
cTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTATGaa > 1:712665/1‑238 (MQ=255)
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TGTCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTATGAA > NC_000913/1747045‑1747514
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
