Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F17 I0 R1
|
160 |
98.0 |
2214160 |
89.0% |
1970602 |
222.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,537,715 |
A→C |
16.0% |
V351G (GTG→GGG) |
nanM ← |
N‑acetylneuraminic acid mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,537,715 | 0 | A | C | 16.0%
| 180.5
/ 2.8
| 67 | V351G (GTG→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (45/9); new base C (2/11); total (47/20) |
| Fisher's exact test for biased strand distribution p-value = 7.39e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGCATCTTCCCTGTCCGGTAATGGCAGTCCTTCGCCATACGCCATGGCATTAGACTGACCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATATAAG > NC_000913/4537487‑4537947
|
gcgcATCTTCCCTGTCCGGTAATGGCAGTCCTTCGCCATACGCCATGGCATTAGACTGACCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTg‑c < 2:1066249/238‑1 (MQ=255)
ccttttCCCTCGCCGGTAAGGGCAGTACTTCCCCAAACCCCATGGCATTAGACTGACCAGCAACGGTAAGAACATAGTAAAGATGGGGCGA‑TATTAGTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCA‑CTGAAGCGGTAG‑TTTTGT‑ACTGTGACTTTATTATCCTGCACAGTGATCAAAACTGAATCCGTCACCGCTTTg‑ccggc < 2:688215/235‑3 (MQ=255)
gCAGTCCTTCGCCATACGCCATGGCATTAGACTGACCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑ATTTGT‑ACTGTGACTTTATTATCCTTAACAGTGATCAAACCTGAATCCGTCACCGCTTTG‑CCGCCTTCAGTTTCACCGCCaataat > 1:540755/1‑239 (MQ=255)
ccTTCGCCATACGCCATGGCATTAGACTGACCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCt < 2:125984/205‑1 (MQ=255)
ccTTCGCCATACGCCATGGCATTAGACTGACCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCt > 1:125984/1‑205 (MQ=255)
ccTTCGCCAGAGGCCATGGCATTAGACTGACCAGCAACGGTAAAAACATAGTAATAATCGGGCAA‑TATTATTGG‑TTTCATATAAATTCCGCGTAATGGAAATGACAAA‑TTG‑ATAGAAGGGCCCCTTTACCGGG‑GCC‑TTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTAAACCCGTCCCCGTTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATa < 1:1099312/239‑1 (MQ=255)
cTTCGCAAAACGCCATGGCATTAGACTGACCAGAAACGGTAAAAACATAGTAATAATCGGGCGA‑TTTTATTGC‑GTTCATATAAATTTCGGGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTCCGGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTAATCAAAACTGAATCCGTCCCCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAg < 1:352974/239‑1 (MQ=255)
cTTCCCCATACCCCATGGCATTAGACTGACCAGCAACGGTAAGAACATGGTAA‑AAACGGGGGATTATTATTGG‑GTTCATAAAAATTCCGCGTAATTGAAATGAAAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCTTTAG‑TTTTGT‑ACTGTGATTTTATTATCCTTCACAGTGATAAAAACTGAATCCGTCCCCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAg < 1:93527/239‑1 (MQ=255)
gCCATACGCCATGGCTTTAGACTGACCAGCACCGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTATCAGTGATCAAAACTGAATCCGTCACGGCTTTC‑ACGCCGGCAGTTTCACCCCAAAAAATCAAAAGACta > 2:1066687/1‑239 (MQ=255)
ggCATTAGACTGACCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGc > 1:543746/1‑239 (MQ=255)
gCATGAGACTGACAAGCAACGGAAAAAAAATAGTAAAAATCGGGCAA‑TATT‑TTGCGGTTCATAAAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑CCC‑CTGAAGCGTTAG‑TTTTGT‑CCTGTGACTTTATTATCCTTCACAGTGATCAAAACTAAATCCGTCCCCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAggg < 1:709018/237‑1 (MQ=255)
aCCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCCCCGCTTTG‑CCCCCTGCAGTTTCACCCCCAATAATCAATAGACTATTATTCCCGGGCAATGTTaac > 2:709018/1‑234 (MQ=255)
aCCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTg‑ccgcc < 2:768535/184‑1 (MQ=255)
aCCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTg‑ccgcc > 1:768535/1‑184 (MQ=255)
aCCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGCCTATTATTCCAGGGCACTGATACTCCg > 1:204705/1‑239 (MQ=255)
aCCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGCCTATTATTCCAGGGCAATGATACCCCg > 1:706139/1‑239 (MQ=255)
aCCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGGGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAACCAATAAACAATTATTCCAGGGCAATGAAACCCCg > 2:13898/1‑239 (MQ=255)
aCATAATAAAAAGCGGGCAA‑TTTTATTGC‑TTTCATATAAATTTCGCGTAATTAAAATGACAAA‑TTG‑AAAGCAGGCCCCTTTTCCCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑CCTGTGACTTTATTATCCTTCACAGTGATAAAAACTGAATCCGTCACCGTTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCg < 1:696325/239‑1 (MQ=255)
aGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATCGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATaa > 1:467579/1‑239 (MQ=255)
taatCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATACTTCACAGTGATCAAAACTGAATCCGCCACCGCTTTG‑CCGCCTGCAGTTTTACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACATTCCGATAAttaa > 1:862287/1‑236 (MQ=255)
gggCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TCTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAAATGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGTGATAATTCACCCg > 1:231804/1‑237 (MQ=255)
gCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATCCTCCGTAGGCCCGACCTTGCGATAATTAACCCGAttt > 1:685037/1‑239 (MQ=255)
gCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGa > 1:362652/1‑224 (MQ=255)
ttCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACtatta > 1:10409/1‑172 (MQ=255)
ttCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGCTACTCCGTAGGCCCGACCTTCCGATAATTCACCCGATTTATCCCATTTCCCGt > 1:25779/1‑239 (MQ=255)
ttCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGCTACCCCCTAGGCCCGACCTTGCGATAATTAACCCGATCTATACCATTTCCCGt > 2:79317/1‑239 (MQ=255)
ttCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGCTTTATCCCATTTCCCGt > 1:313084/1‑239 (MQ=255)
ttCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGt > 1:325168/1‑239 (MQ=255)
ttCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCCCAGGCCCAACCTTGCGATAATTCACCCGATTTATCCCATTTCCGGt > 2:646809/1‑239 (MQ=255)
ttCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATAAATAGACTATTATTCCAGGGCAATGATACCCCTTAGCCCGGACCTTGCGTAAATTACCCCGCTTTATCCCATTTccctt > 1:148773/1‑237 (MQ=255)
ataAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACATTTCGGAAATTCACCCGCTTTATACCATTTCCCGTTAtac > 2:627456/1‑237 (MQ=255)
attgtgcgTAATTGGAATGTCAAA‑TTGTATACATGTGCCCCTTTA‑CGGG‑GCC‑CTGGA‑CGTTTGATTTTTTGTCTGGGCTTTTATTACCTTACTGATTGAAAAAACCTTAACCCCACCCCCTTTTC‑CCGCTTGACGTTTCCCCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCaa < 2:25779/234‑1 (MQ=255)
cgcgTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATa > 1:148626/1‑175 (MQ=255)
cgcgTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTAATCCCATTTCCCGTTATCCCAAAAAta > 2:293286/1‑238 (MQ=255)
cgcgTAATCGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCACTGATCCTCCGTAGCCCCGACCTTGCGTTAATTACCCCGGTTTATCCCATTTCCCTTTAGTCCaaaccta > 2:681226/1‑235 (MQ=255)
cgcgTAA‑TGGAATGAAAAATTTG‑ATAGCAGGCCCCCTTTCCCGGG‑CCC‑CGGAAGCGTTAG‑TTTTGT‑ACGGTGATTTTATTACCCTTCACAGTGATCAAAACTGAATCCGTCCCCGCTTGG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATg < 1:611345/239‑1 (MQ=255)
aaaTTGAAATGACAAA‑GTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGGTTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTTATAAAAACTGAATCCGTCACCGTTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAata < 1:293286/238‑1 (MQ=255)
attttaatttaaaatttG‑ATAGGGGGGCCTCTTT‑CCGGG‑GCCTCGGAAGTTTTAT‑TTTTGT‑ACTGTGATTTTATTATCCTTCACAGTAAACAAAACTAAATCCATCCCTGCTTGC‑CCCACCGAAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAatat < 2:325168/224‑1 (MQ=255)
tttaaTGACTAA‑TTT‑ATAGGAGGGCCCCTTTCCCGGGCGCA‑CTAAAGGTTTTT‑TTTTTC‑TCTGTCTCTTTATTTCCCTTCACAGTAACAAAAATTAACTCCG‑CCCCGATGTGCCCGCCTGCATTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCa < 2:313084/236‑1 (MQ=255)
aTGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTACTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTg > 1:219086/1‑237 (MQ=255)
aCAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTACCCCGATTTATCCCATTTCCCGTTATGCCACAGATGAATATCAGTC‑Ttata > 1:603214/1‑239 (MQ=255)
cAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCg > 1:624125/1‑164 (MQ=255)
cAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGa > 1:267826/1‑126 (MQ=255)
ggCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCATTAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCTCCCGATTTATCCCATTTCCCGTTATGCCACAGCTTAATATCAGCG‑GTAAAAGGTTTTTACAGGcc > 2:723067/1‑239 (MQ=255)
ggCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAgg > 1:311387/1‑237 (MQ=255)
ggCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAAAATCAGTG‑CTAAATGATTTTTTAAgg > 2:408768/1‑237 (MQ=255)
ttACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTT‑CCGCCTGCCGTTTCCCCGCCAATAATCAATAGACTCTTATTCCCGGGCAATGATACTCCGTAGGCCCGACCTTGCGTTCATTCACCCGGTTTATCCCATTTCCCCTTTTGCCAAAAGTGAAATTCAATGCCTAT‑TTATTTTTTCCCGCCTTCAtcc > 2:257013/1‑237 (MQ=255)
cgggg‑gCC‑TGGAAGCGTTAG‑TTTGTC‑ACTGTGTCTTAATTACCCTCCCCGGTAACCAAACCTAAATCCGGCCCCGTTTTG‑CCGCCGGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCa < 1:646809/237‑1 (MQ=255)
ccGGG‑GCC‑CTGAAGCGTTTG‑TTTTGT‑ACTTTGATTTTATTATCCTTCACAGTGATAAAAACTGAATCCGTCACGGCTTTG‑CCGCCGGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCa < 1:257013/239‑1 (MQ=255)
ccGGG‑CCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGAATTTATTATCCTCCACATTGATAAAAACTGAATCCGTCCCCGCTTTG‑CCGCCTGCAGTTCCCCCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCa < 1:408768/239‑1 (MQ=255)
g‑gCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGt > 1:344568/1‑239 (MQ=255)
gCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAatat > 1:783583/1‑199 (MQ=255)
cc‑cTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATACTTCAAAGTGACAAAAACTGAATCAATACCCGATTAG‑CCGACTGCACATACACCGACACAACTCCACAGACAAATATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTCTCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGt > 1:594693/1‑237 (MQ=255)
ttAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGCTAATTCACCCGATTTATCCCATTTCCCGTTAGGCCAAAGATGAATATCAGTC‑CTAATTGATTTTTTCAGTCCTTCATGCGCCTATTTCTTACCGt > 2:1060333/1‑236 (MQ=255)
t‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGtt > 1:1085912/1‑219 (MQ=255)
tgACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTccc > 1:120077/1‑154 (MQ=255)
tgACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGa > 1:1039625/1‑187 (MQ=255)
tattatCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCt > 1:556505/1‑239 (MQ=255)
atCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGa > 1:650548/1‑239 (MQ=255)
ttCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGCTTTATCCCATTTCCCGTTATGCCAAAGACGAATATCAGTG‑CTATATGATTTTTTCCGGCCTTCATACGCATAGTTCTTACCGTTTTGGAAATTTTTTCGTGAACCTTGGAAAcc > 2:541591/1‑239 (MQ=255)
cacaGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATCCGCa > 2:907484/1‑193 (MQ=255)
cacaGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTAATCCCATTTCCCGTTATGCCAAAGATGAATATCAGCG‑CTATATGATTTTTTCAGGCCTTCATGCGCATATTTCTTACCGTTCTGGTAATTTTCTCTGGAAACtttaacacga > 2:607220/1‑231 (MQ=255)
cacaGTGATCAAAACTAAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCa < 1:907484/193‑1 (MQ=255)
ttacaaaaaCTGAATCCGTCACCGTTTTC‑GCCTCTGCATTTTCCCCGCCAATAATCAATAGACTATTATACCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCt < 1:175038/234‑1 (MQ=255)
aaacAAAACGGAATCCGGCCCCGTTTTC‑CCCCCTGGATTTCAACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCt < 1:1060333/235‑1 (MQ=255)
aaTCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAAtata > 1:139830/1‑239 (MQ=255)
tCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTTCGATACTTCAACCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CCATATGATTTTTTCAGGCCTTCATGCCAATATTCATTGCCGTTCTGGAAATTTTCCTGTTGACCTTTGATTCCGGCCCCTCCCCCaaaacaaaa > 2:1036328/1‑233 (MQ=255)
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GCGCATCTTCCCTGTCCGGTAATGGCAGTCCTTCGCCATACGCCATGGCATTAGACTGACCAGCAACGGTAAGAACATAGTAATAATCGGGCGA‑TATTATTGC‑GTTCATATAAATTTCGCGTAATTGAAATGACAAA‑TTG‑ATAGCAGGGCCCCTTTACCGGG‑GCC‑CTGAAGCGTTAG‑TTTTGT‑ACTGTGACTTTATTATCCTTCACAGTGATCAAAACTGAATCCGTCACCGCTTTG‑CCGCCTGCAGTTTCACCGCCAATAATCAATAGACTATTATTCCAGGGCAATGATACTCCGTAGGCCCGACCTTGCGATAATTCACCCGATTTATCCCATTTCCCGTTATGCCAAAGATGAATATCAGTG‑CTATATGATTTTTTCAGGCCTTCATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATATAAG > NC_000913/4537487‑4537947
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
