Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F9 I0 R1
|
80 |
116.8 |
2384848 |
97.0% |
2313302 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,538,110 |
A→C |
19.2% |
G219G (GGT→GGG) |
nanM ← |
N‑acetylneuraminic acid mutarotase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,538,110 | 0 | A | C | 19.2%
| 117.3
/ 7.4
| 49 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| Reads supporting (aligned to +/- strand): ref base A (32/6); new base C (2/8); total (34/15) |
| Fisher's exact test for biased strand distribution p-value = 2.68e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAGATATTCTGGTTAACACCACCAGT > NC_000913/4537875‑4538340
|
cATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑t < 2:188999/239‑1 (MQ=255)
cATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑t > 1:389224/1‑239 (MQ=255)
cATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑Tc > 2:342377/1‑239 (MQ=255)
tgtGGTAATTTTCTAGTGAAGCTTTGAGTCCGGCCCCTCCGGCAAATAT‑AAGAGACTCCTTGCTTATCTCCGCAAAACCGCAAGCTACGACATCTGGTGATGAGACGGGAGCAGGCTTATTCCCTTTT‑AAATTATGACGGGTCAAATCAGGTT‑C‑ACATACGGCATCCGT‑TCGCAATCGT‑GGTTTGC‑CTCCGCCATTAATAAGCCAGTCTTTATCCCC‑TTTAT‑Tc‑acccgcgcgccacca > 1:1065987/3‑226 (MQ=255)
tCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTCTCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCa > 1:723732/1‑239 (MQ=255)
tCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑ACCCGCCGCACCa > 2:364209/1‑239 (MQ=255)
tCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCAcc > 1:235388/1‑238 (MQ=255)
tCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCa > 2:1084625/1‑239 (MQ=255)
tCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCa > 2:577521/1‑239 (MQ=255)
aacccgCCCCCCCGGAAAAAAAAAAGAAAATCATTCCTTACCCCCAAAAAACCGCCAGCACCGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTA‑AAATTATTACCGGTGAAATAAAGTA‑C‑AAATACGGCATCCGT‑CCGCAATCCT‑GGTTGGG‑CTCCGCAATAAATAAGCCAGTTTTTATCCCC‑TTTAT‑CC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGcc < 2:662594/234‑1 (MQ=255)
tCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATc > 2:683940/1‑239 (MQ=255)
tCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATc > 1:545881/1‑239 (MQ=255)
ttATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGAGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGac > 2:846804/1‑239 (MQ=255)
aTCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGaca > 2:1058485/1‑238 (MQ=255)
aTCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGaca > 2:64736/1‑238 (MQ=255)
cGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGTAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCCCC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAACAGCCAACAgca > 1:102988/1‑237 (MQ=255)
cAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGaa > 2:429189/1‑237 (MQ=255)
cgccacatgcgtctgcTGGGGAGGATACGGGACAAAGTTTCCTCAATTTA‑AAATTCTTCACGGTAAAAACAAGTA‑A‑AAACCCGGC‑TCCGTCACGCAACCGT‑GTTTTGG‑CTTCGACATTAA‑AACCCCCGTTTTAACCCC‑CTTATCAC‑AC‑ATCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTg < 1:1058485/224‑1 (MQ=255)
agaCGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTg > 2:775058/1‑239 (MQ=255)
agaCGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTg > 1:269993/1‑239 (MQ=255)
ggAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCA‑TAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCaaca > 2:900218/1‑237 (MQ=255)
gagaaagtttttCCATTTTAAAATTTTTCCGGGAGAAAT‑AAGTTAC‑AAATCGGGCA‑CCGT‑TCCGAAACCC‑TGTTTGG‑GTTCCCCAATAAAAAAGCCGGTTTTTTCCCCTTTTAT‑CC‑AA‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCaaa < 2:289468/228‑1 (MQ=255)
cAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAg > 2:400274/1‑239 (MQ=255)
ttCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCAtt > 2:107088/1‑239 (MQ=255)
ttaCCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCCTTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCATAATAGTGAGCATTGATTTTATCTATAGc > 2:806865/1‑239 (MQ=255)
tGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGaa > 1:1183734/1‑239 (MQ=255)
taaaaCAAGTT‑AAAAATACGCCACCCGT‑TCGCAATCGT‑GGTTGGG‑CTCCGCCATTAATACCCCAGTTTTTACCACC‑TTTAT‑CC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGa < 2:770567/237‑1 (MQ=255)
tt‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCa > 2:17411/1‑238 (MQ=255)
tt‑C‑AAATACGGCATCAGT‑TCGAAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAACTAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCa > 2:704844/1‑238 (MQ=255)
taaatgcggtcATCCGT‑TCGC‑ATCCTGGGTTTGG‑TTGGACCATTAATAGGCCGGTTTTTATCA‑C‑GTTAT‑TCAAC‑ACCCGCCCCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGc < 1:577521/229‑1 (MQ=255)
gtaaatccgccttcttt‑tCTCAATCCT‑TTTTTTG‑TTCCGCCATTAATAGCCCAGTTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGc < 2:298367/223‑1 (MQ=255)
gaaaTCCGGCATCCTT‑TCGCAATCCT‑GGTTGGG‑CTCCGCCATTAATAAGCCAGGTTTAATCCCC‑TTTAT‑CC‑AC‑ACCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGcc < 2:102988/238‑1 (MQ=255)
gCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTgag > 1:349399/1‑239 (MQ=255)
cacccGT‑CCGCAATCCT‑GGTTTGG‑CTTCGCCATTAAAAACCCAGGTTTTATCCCC‑TTTAT‑CC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTgag < 2:870011/235‑1 (MQ=255)
gtatgCACTCCT‑TGTTTGGCCTTCCCCATTATAAGGCCTGTTTGTCTCCCC‑TTAAT‑TC‑CA‑ATCCGCCGCCCCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCtt < 1:848262/235‑1 (MQ=255)
cGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAACTAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCaaa > 1:932218/1‑239 (MQ=255)
cGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCaaa > 2:840486/1‑239 (MQ=255)
tCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAg > 2:209735/1‑238 (MQ=255)
tttGG‑TTTCGCTATAAATATGCCGGGTTTTATCACC‑TTTAT‑TC‑CA‑ACCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGa < 2:723732/239‑1 (MQ=255)
tttGG‑TTCCGCCATAAAGAAGCAGTTTTTTACCCCC‑TTTCT‑CC‑AC‑ACCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGa < 2:804144/239‑1 (MQ=255)
tGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAg > 2:436950/1‑239 (MQ=255)
tGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAg > 1:211103/1‑239 (MQ=255)
tccataaaaatacgcgtgtttgtATCCCT‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAGATAtt < 1:107088/217‑1 (MQ=255)
tCGCAATAAATACGCCAGTTTTACCCACC‑TTTAT‑CC‑CC‑AGCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAGATAtt < 2:236115/239‑1 (MQ=255)
ggTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCATAATAGCCATTGAAGATATTCTGGTTAACACCACCAg > 1:777296/1‑239 (MQ=255)
gTTTTTTCTCC‑TTTTA‑TC‑ACAAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGTGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAGATATTCTGGTTAACACCACCAg < 2:754179/239‑1 (MQ=255)
gTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTgaga > 2:1045051/1‑195 (MQ=255)
gTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAGATATTCTGGTTAACACCACCAGt > 2:107993/1‑239 (MQ=255)
gTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAGATATTCTGGTTAACACCACCAGt > 1:971343/1‑239 (MQ=255)
|
CATGCGCATAGTTCTTACCGTTCTGGTAATTTTCTCGTGAACCTTTGAATCCGGCCCCTCCGGCAAATAT‑AAGAGAATCATTGCTTATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTT‑AAATTATTACCGGTGAAATCAAGTT‑C‑AAATACGGCATCCGT‑TCGCAATCCT‑GGTTTGG‑CTTCGCCATTAATAAGCCAGGTTTTATCACC‑TTTAT‑TC‑AC‑AACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGATTTTATCTATAGCGGTTGAATCTTTTCCAGCCTCGTTGAGATCTTCAAAATAGCCATTGAAGATATTCTGGTTAACACCACCAGT > NC_000913/4537875‑4538340
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
