Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I0 R1
|
140 |
172.9 |
3477528 |
97.9% |
3404499 |
226.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,151,691 |
C→T |
15.2% |
intergenic (+45/+20) |
yegJ → / ← yegK |
uncharacterized protein/ser/thr phosphatase‑related protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,151,691 | 0 | C | T | 15.2%
| 121.3
/ 3.6
| 69 | intergenic (+45/+20) | yegJ/yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| Reads supporting (aligned to +/- strand): ref base C (35/22); new base T (4/7); total (39/30) |
| Fisher's exact test for biased strand distribution p-value = 1.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT > NC_000913/2151492‑2151924
|
aatgtgggaaGGAGTGAAAAAAAAAGAAAGAATATTTTTCAGATTGGATGTAGCCGCGGGGGAATAAAATTTAAGGCGGTTATCCCATTTATCTTTTTTTGGTCACCTATCAAAAAGAAGAAGCCGCCGAGTTAAGAACAAATTTAGTCCCCTAACCAGCCTTTTTTTTTATTGTTTAAACGGGC‑GGTTGAA‑TTT‑TTTT‑CT‑T‑CAT‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCa < 1:1213417/230‑1 (MQ=255)
agagaaaaaaaaaaaaaaaaaaTTTTTCAGAGTGGTTGTATACGGGGGGGAAAAAAATTAACGGCGGTTATACAATTGATCTTTTTTTGGCCCCCTACCAAAAAGAAGAAGCCGACGAGATAAGAGAAAAATTATTTCGCTAACCCGCTTTTATTTTTTTTGTTAAAACGGGC‑GTTTGAA‑TTG‑TTGT‑TT‑C‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 2:149351/224‑1 (MQ=255)
aaaaaaaaaaaaaaGTTATTCCAGAGTTGGTGTATCCGCGGGGGAAAAAAATTTAGGGCGGTTAAACTATTGATCTTTTATTGGCCCCTTATACAAAAAAAGAAGCCGACGAGAAAAGAGCAAAATTAGTTCGATAATCAGCCTTTATATTTTTTGTTTAAACTGGC‑GGTTGAT‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcat < 1:1484154/231‑1 (MQ=255)
aaaaaagaaagaAGATTTTTCAGCTGGGATGTATACGCGCGGGAAAAAAATTTCCGGGGTTTATCCCTTTGATCTTTTATTGGTCCCCTATCAAAAAGAAGAGGCCAACGAGCTAAGAGAAAAATTAGTTCGCAAATCAGCCTTTATATTTATTGTTAAACCGGGC‑GGTTGAA‑TTG‑TTTT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatc < 2:1203877/235‑1 (MQ=255)
tgtaTGTATACGGGGGGGAATAAAATTTAGGGCGTTTATCCCATTTATCCTTTATTGCTCCCCTAACAAAAAAAAAAAGCCGACGAGCTAAGAGAAAAATTGGTTCGCAAATAGCCCTTTATATTTATTGTTTAAACGGGC‑GGTTGAA‑TTG‑TTTT‑TT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCggg < 2:874035/236‑1 (MQ=255)
tataCCATTGACCTTTTATTGGTCACCTATCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTATTCCGCTAATCAGCCTTTATATTTATTGTTAAACCTGGG‑GGTTAAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATaaa < 2:698095/239‑1 (MQ=255)
tGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGTA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCCTACGCT‑CGTTTACCG‑CCGCGGTGGACAAAAAATGCTTTTACAATT‑CTGGGAATAAAA‑CGAg‑gtg > 1:558064/1‑239 (MQ=255)
tGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTTCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCC‑CGTTTACCG‑CCGGGCTGGACAAAAAATGCTTTAACAATT‑TAGGTAATAAAT‑CGAg‑ttg > 2:985986/1‑239 (MQ=255)
gATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCTTGAGAAAACCACTCTTCCCCCACCGCCCGTTCCCACCGTTTATTATCATTCCTACGCC‑CGCTTTTCC‑CCGGGCGGGGCCAAAACTGCCTTAACAATT‑CAGCTAATAAAT‑CGAg‑ttgt > 1:779101/1‑239 (MQ=255)
ttATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑TT‑T‑CCA‑ACGCCATGAGAAAATCACTCTGCCCCCAGCGCCAGGGCCAACGGTTTTTCATCCTACGTAACCC‑CGTTTACCC‑CCGGGCTGGACAAAAAATCCTTTAACAATT‑CCGGTAAACAAT‑CGAG‑TTGTTCCCGc > 1:978505/1‑239 (MQ=255)
ttATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑TAA‑ACCCCCTGAGAAACTCACTCTTCCCACAGCCCCACTGCCAACGTTTTATCATCATCCCTCCGCC‑CGTTTTCCG‑CCGGGGTGGGCAAAAAAAGCTTTTACAATT‑TCGGTTATAAAT‑CGCG‑TTGTTCCttc > 2:1114988/1‑237 (MQ=255)
aTTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTT‑TTGT‑CT‑T‑CCA‑CCCCCCTGAGAAACTTACTCTTCCCACAGCGCCAGTGCCCACCTTTTATCATCATCCCTACGCT‑CGTTTACCC‑CCGGGCTGGACAAAAACTGCTTTAACAAAT‑CAGGtaatacactcagtttttccctcgt > 1:1699584/1‑220 (MQ=255)
aTTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCACGAGAAACTCCCTCTTCCCACAACGCCAGTGCCAACGCTTTATCATCATCCGTAAGCT‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTTACAATT‑CAGGTAATAAAT‑TGAG‑TTGTTCCTTCGt > 2:490302/1‑239 (MQ=255)
gTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTTA‑TTT‑TTGT‑CT‑T‑CCA‑CCGCCATTAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGGTTTATCATCATCCGTACCCT‑CGCTTACCG‑CCCGGCTGGACAAAAAATGCTTTTACAAAT‑CAGGGAATAAAT‑CGCG‑TTGTTCCTGCggt > 1:280196/1‑234 (MQ=255)
gTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATTATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGGAATAAAT‑CGAG‑GTGTTCCTGCGtt > 2:753391/1‑236 (MQ=255)
cACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTT‑TTGT‑CT‑T‑CCA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCCACATCCGTACGCT‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTTACAATT‑CCGGGAATAAAA‑CGCG‑TTGTTCCTGCGTttctt > 1:1236316/1‑237 (MQ=255)
cACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑ATG‑TTGT‑CT‑T‑CAA‑CCGCCATGAAAAACTCACTCTGCCCACAACCCCAGTGCCAACGTTTTATCATCATCCCTACGCT‑CGGTTACCG‑CCCGGCGCGCCAAAAACCGCTTTACCAATT‑CAGGGAATAAAT‑AAGG‑TTGTCCCCTCGTtgctg > 1:370670/1‑238 (MQ=255)
aCCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTAA‑TTT‑TTTT‑CT‑T‑TAA‑CCGCCATGAGAAACTCACTCTGCCCACCGCGCCAGTGCCCACGTTTTATCCTCATCCGCACGCT‑CGTTTTCCG‑CCGGGCGTGCCAAAAACTTCTTTCACACTT‑CAGGGAATAAAA‑TCAG‑GTGTTCCTCCGTttctgc > 1:1227508/1‑238 (MQ=255)
cTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CCAG‑TTGTTCCTGCGTTGCTgccg > 2:630231/1‑238 (MQ=255)
cTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTTGGCAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑GTTTTTCTGCGTTGCTgccg > 2:1627048/1‑238 (MQ=255)
ataacaaaaaaaaaaaGCCAACGAGATAAGAAAAAATTTATTTCTATAACCAGCTTTTATATTTATTGTTAAACCTGGC‑GTTTGAT‑TTT‑TTGT‑TT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTgccgc < 2:521797/233‑1 (MQ=255)
accaaaaaaaaaAGGCCGACGAGCAAAGATAAAAATGAGTCCTTAACTCAGCCTTTATTTTTATTTTTAAAACTGGG‑GTTTAAT‑TTG‑TTGT‑CT‑T‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCa < 2:62107/235‑1 (MQ=255)
aTCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAACGCCAGGGCCAACGGTTTATCATCATCCCGACGCT‑CCGTTACCG‑CCCGGCCGGGCAAAAAATGCTTTAACAAAT‑CAGGGAATAAAA‑AGGG‑GTGTTCCTGCGTTGCTgccccc > 1:1505699/1‑238 (MQ=255)
tCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCCCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCT‑CGTTTTCCC‑CCGGGCTGGGCCAAAACTGCTTTAaaaaat > 2:1256588/1‑197 (MQ=255)
tCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑ATT‑TTTT‑TT‑T‑CAA‑CCCCCCTTAAAAACACACTCTGCCCACAACGACAATGCCAACGGTTTATCATCATCCGTAAGCT‑CGTTTACCG‑CCCGGACGGCCAAAAACTGCTTTAACAATA‑TCGGAAATAAAC‑CGAG‑TTGTTCCTTCGTTTCTGCCGCCat > 1:393885/1‑238 (MQ=255)
tCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGGTGTA‑TTT‑TTTT‑CT‑T‑CTA‑ACCCCATCGAAAACTACCCCTGCGCAACGCGCCAGGGCCAAACGTTTATCATCAACCCTACGCT‑CGACTATCG‑CCCGGCCGGGCAAAAACTTCTTTTACAATA‑CAGGTAAAACAT‑CTAG‑TTGTTTCtcgctcgcagccgcccg > 1:859913/1‑223 (MQ=255)
aaaagaaagaacccacctaGCTAA‑AGAAAAATTTGTTTCTTAAACAGCCCTTTTTTTTTTTTTTTTACGTGGG‑GGATTAA‑TTT‑TTTT‑CTCC‑CAC‑CCGCCATGAAAAACTCCCTCTTCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CTTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTc < 1:490302/221‑1 (MQ=255)
gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGATTTA‑TTG‑TTTT‑CT‑T‑CAA‑CAGCCATGAGAAACTCACTTTGCCCACAGCGCCCGAGCCAACGGTTTATTAACCTTCGGACGCTCCGTTCACC‑‑CCGGGCCGGGCCAAACCTGGTTTTAAAAAT‑CATGGAATAAATACGGG‑TT‑TTCCTTGCTTGCAGCCGCCCTTCCAttttaa > 1:240416/1‑235 (MQ=255)
aagCCGGCGAGCTAAGAAAAAATTTATTTCCATAACCAGCTTTTTTTTTTTTTTTTTAAACGGGG‑GGTTAAT‑TTG‑TTGT‑TT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaa < 2:512202/239‑1 (MQ=255)
ccccggggagaaaagaaaaaaaTTATCTCCCTAATCCCCTGTTATATTTTTTTTTAAACCGGGC‑GGTTGAT‑TTT‑TTGT‑CT‑A‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaaa < 2:953603/221‑1 (MQ=255)
agCCGACGAGATAAGAGAAAAATTAGTTCGTTAATCAGCTTTTATATTTATTGTTTAACCGGGG‑GTTTAAT‑TTT‑TTGT‑CT‑C‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaaa < 2:280196/239‑1 (MQ=255)
acgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGGTTAA‑TTG‑TTTT‑CT‑T‑TAA‑CCGCCATGAGAAACTCAATCTGCCCACAGCGCCAGTGCCCCCGATTTATCATCATCCGTACGCT‑CGCTTACCGCCCGGGCGGGACAAAAA‑TTCTTTAACAAAT‑CCGGGAAAAAAA‑CGAG‑TTGTTCCTCTGTTTGTGCCGCCAGTCCCTTGaaaaaaaggg > 1:1406802/1‑234 (MQ=255)
tgtgaaaaagaaaaaaaaTCGGCCTTTTTTTTTTTTGTTAAAACGGGG‑GGTTAAT‑TTT‑TTGT‑CT‑C‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAgg < 2:994599/222‑1 (MQ=255)
cAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTAA‑TTG‑TTGT‑CT‑T‑TAA‑CCGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCAAAGTTTTTTCATCATCCGTACGCC‑CGTTTAACG‑CCCGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTTCCGCCCGTTCATTGAAAAAAGGGGGAAAGAAAgggc > 1:120551/1‑237 (MQ=255)
aaaattattcccatatacAGCCTTTAT‑TTTTTTTTTTAAACGGGG‑GGGTTAA‑TTGTTTGT‑CT‑C‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGcac < 2:779101/222‑1 (MQ=255)
aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTTT‑CT‑T‑CAA‑ACGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCAACGGTTTATCATCATCCGTACGCT‑CGTTTACCC‑CCGGGCTGGGCAAAAACTGCTTTTACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCCGGCCCTTGAAAAAAGGGGGAAAGAAAAGcaca > 2:955784/1‑239 (MQ=255)
aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGGA‑TTG‑TTGT‑CT‑T‑CCA‑ACGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAAAGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAAATGCTTTTACAATT‑CTGGTAATAAAT‑CGAG‑TTGTTCCTCCGTTGCTGCCGCCCGTCCATTTAAAAAAGGGGGAAAAAAAAGCACAt > 1:1586408/1‑239 (MQ=255)
tagtcctttatccagcttttatttttatttTTAAACCTGGT‑GTTTAAT‑TTT‑TTTT‑CT‑C‑AAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 2:899347/221‑1 (MQ=255)
tAGTCCTCTAATCAGCCTTTATTTTTTTTTTATAACGGGGC‑GTTTGAT‑TTT‑TTTT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 2:120551/239‑1 (MQ=255)
tAGTCCGCCAATCGCCCTTTATTTTTATTGTTAAACCTGGT‑GGTGAAT‑TTT‑TTTT‑CT‑T‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTCCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 2:370670/239‑1 (MQ=255)
tAGTACGATAACCGGCCGTAATATTTGTTGTTAAAACTGGG‑GGTT‑AA‑TTG‑TTTTCCT‑A‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 2:823773/239‑1 (MQ=255)
gTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑TAA‑CCCCCATGAGAAACTAAATCTGCCCCAAGCGCCCGTGCCAACGTTTTATAATCATCCGTTAGCT‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAAAAAAT‑CGAG‑TTGTTCCTGCGGTGCCGCCGCCCGTCCATTGAACAACCGGGTAAAGAAAAGCACATgagga > 2:640619/1‑239 (MQ=255)
gTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑ACGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCGTACGCC‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTAACAATT‑CCGGTAATAAAT‑CGCG‑GTGTTCCTGCGTTGCTGCCGCCAGTCCCTTTAAAAAAGGGGTaaagaa > 2:923485/1‑226 (MQ=255)
ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTT‑TTGT‑CT‑T‑TAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCCGTGCCCACGGTTTTTCATCATCCGTACGCC‑CGTTTACCC‑CCGGGCCGGACCAAAACTGCTTTTAAAATT‑TAGGGAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCCCCAGTCCATTTAAAAACGGGGTAAAGAAAGGCACATgaggag > 2:753207/1‑239 (MQ=255)
ctataacgaGCTGTTATTTTTATTGTTAAACCTGGG‑GGTTAAA‑TTG‑TTGT‑CT‑A‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGaa < 2:1550690/231‑1 (MQ=255)
cGCTAATCAGCCTTTATTTTTGTTTTTAAAACGGGC‑GGTTGAT‑TTG‑TTTT‑CT‑T‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 2:693092/234‑1 (MQ=255)
aGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCGTACGCC‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CCGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCa > 2:933228/1‑238 (MQ=255)
aGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACACCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGGCAAAAACTGCTTTTACAATT‑CAGGGAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCCTTGAAAAAAGGGGGAAAGAAAGGCACATGAGGAGAATTATCCa > 2:244877/1‑238 (MQ=255)
gcttttATTTTTTTTTTTTAAACTGGG‑GTTTAAT‑TTT‑TTGT‑CT‑C‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 2:1505699/235‑1 (MQ=255)
tccttATTTTTTTTTTTTTAACGGGG‑CGTTTGA‑TTG‑TTTG‑TT‑T‑CAACCCGCCATGAGAACCTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 1:630231/236‑1 (MQ=255)
cgtttATTTTTTTTGTTT‑AACTGGC‑TGTTGTA‑TTT‑TTTA‑CT‑TCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCa < 2:285245/236‑1 (MQ=255)
cgtttATATTTGTTTTTAAATCTGGT‑GTTTGAA‑TTG‑TTGT‑‑T‑T‑CAACCCGCCATGAGAATCTCACTCTGCCCACAGCGCCAGTCCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGATCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCa < 2:1630111/236‑1 (MQ=255)
ccGTTATATTTATTGTTTAAACTGGC‑GGTTGTA‑TTT‑TTGT‑TT‑T‑CCA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATTATCCCTACCCC‑CGTTTACCG‑CCCGGCTGGGCAAAAACTGCTTTAACAATT‑CAGGGAATAAAA‑CGAG‑TTGTTTCTCCGTTTCTGCCGCCCGTCCATTGAAAAACGGGGGAAAGAAAGCGACATGCGGGGAATTATc > 1:693092/1‑234 (MQ=255)
agaaagatttttttttttAAAACGGG‑GGGTGAATTTG‑TTGC‑TT‑A‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 2:1070370/231‑1 (MQ=255)
ttATATTTATTGTTTAAACTGGC‑GGTTTAA‑TTG‑TTGT‑CT‑T‑CCA‑CCGCCCTGAGAAACTCACTCTTCCCACAATCCCAGTGCCCACGGTTTTTTATAAACCGTAAGCC‑CGGTTACCG‑CCCGGGTGGGCAAAAACCGCTTTTAAAATT‑CAGGTAATAAAT‑CGAGTTTGTTCC‑GTGTTGCTGCCCCCCGTCC‑‑TGAAAAACGGGGGAAAAAAAAGCCCCAGGGGAGAATTATCCAgactaatt > 1:967434/1‑232 (MQ=255)
atatTTATTGTTTAAACTGGC‑GGTTTAA‑TTG‑TTGT‑CT‑T‑CAA‑CCCCCATGAGAAACTCACTCTGCCCACAGCGCCCGTGCCAACGTTTTATCCTCATCCCTACGCT‑CGTTTACCG‑CCGGGGCGGGCAAAAAATGATTTTACAATT‑AAGGTAATAAAT‑CCAG‑TTTTTTCTGCCTTGGTGCCGCCAGTCCATTTGAAAACGGGGGAAAGAAAAGCAAACGAGgagactgctctttaaacaa > 1:994599/1‑223 (MQ=255)
gtttttttttAAACCGGGGGGTTGAT‑TTG‑TTGT‑CC‑A‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTaa < 2:240416/232‑1 (MQ=255)
tattGTTTAAACTGGC‑GGTTGAA‑TTT‑TTGT‑CT‑T‑TCA‑CCGCCATGAGAAACTCACTCTGCCCACCGCGCCAGTGCCCACGGTTTTTCATCATCCGTACGCT‑CGTTTACCC‑CCCGGGTGGACAAAAACTGCTTTTACAATT‑CAGGTAATAAAT‑CGAG‑GTGTTTCTGCGTTGCTGCCGCCCGTCCATTGTAAAACGGGGTAAAGAAAAGCACATGAGGAGAATTATTCAGCATAttttaag > 1:1120763/1‑234 (MQ=255)
tattGTTTAAACTGGC‑GGTTGAA‑TTG‑TTTT‑CT‑T‑CCA‑CCCCCCTGAGGAAATCACTCTTCCCACAACGCCCGTGCCAACCTTTTTTTATCATCCGTACGCT‑CGTTTTCCC‑CCGGGGCGGGCAAAAAACTCTTTTACAATTACAGG‑AATAAAA‑CGAG‑TTGTTTCCGCTGTTCTGCCGCCAGTCCCTTTTAAAACGAGGTAAAGAAAGGCACATGAGGAGAAtttttccgccaattttacg > 1:843084/1‑221 (MQ=255)
tGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑TT‑T‑CAA‑CCCCCCTGAGAAAATCACTCTTCCCACAGCGCCAGTGCCAAAGTTTTATCATCATACGTAAGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑GTGTTCCTGCGTTGTTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAAATATCCAGCATCTTTAAAGCCAg > 1:980512/1‑239 (MQ=255)
tattAAACTGGG‑CGTTTAA‑GTG‑TTGT‑TC‑T‑CAACCCGCCATGAGAAACTCACTCTGCCCAAAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAg < 2:859913/237‑1 (MQ=255)
tttAAACGTGG‑GGGTGAA‑TTT‑TTTT‑CT‑TCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGt < 2:885555/239‑1 (MQ=255)
ttAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑TAA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCCGTGGCAACGTTTTTTCATCATCCGTACCCC‑CGCTTTCCC‑CCGGGCGCGACAAAAACTGCTTTAACAATT‑CATGGAATAAAT‑CGAG‑GTGTTCCTGCGCTTCTTCCGCCAGTCCATTTAAAAAAGGGGGAAAGAAAAGCACAAGAGGAGAATTATCCAACCTATTTAAAGCCAggc > 1:885555/1‑236 (MQ=255)
ttAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAAATCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CCAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGcaca > 2:581375/1‑204 (MQ=255)
gtGGC‑GGTAGAT‑TTT‑TTGT‑CC‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACTTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa < 2:978505/238‑1 (MQ=255)
cgggtgttttatttttttt‑ct‑c‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa < 2:1120763/221‑1 (MQ=255)
ggggTTAAA‑TTT‑TTTT‑CT‑C‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATa < 2:1236316/236‑1 (MQ=255)
ttgt‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaag > 2:207845/1‑175 (MQ=255)
gt‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt > 1:474019/1‑236 (MQ=255)
gt‑CT‑T‑CAA‑CCGCAATGAGAAACTCACTCTAACCACAGCGCCAGTGCCATCGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGCCACAAACTGCTTTAACATTT‑CCGGAAATAAAT‑CGAA‑TTGTTCCTGAGTTGAAGCCGCCAGTCCATTGAAAAACGGGGTAACGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCTCTGGATAGCATCCGTAAAt > 1:1538222/1‑236 (MQ=255)
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AATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTG‑TTGT‑CT‑T‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATT‑CAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT > NC_000913/2151492‑2151924
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
