Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F17 I0 R1 124 155.2 3079696 98.3% 3027341 226.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,228,308 G→C 12.9% pseudogene (300/1287 nt) mdtQ ← pseudogene, putative channel/filament proteins

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,228,3080GC12.9% 215.5 / 3.7 104pseudogene (300/1287 nt)mdtQpseudogene, putative channel/filament proteins
Reads supporting (aligned to +/- strand):  ref base G (40/47);  new base C (4/11);  total (46/58)
Fisher's exact test for biased strand distribution p-value = 2.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 110 total aligned reads displayed.

AGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCATTG  >  NC_000913/2228071‑2228542
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                            
agaagTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTCCCCCCCCCCG‑GGTTTAACCGTACCCCGGCGGGGC‑GTAACCTCCGCCCGATTCTTTC‑CCCCC‑ATATCGCGATGCCAg                                                                                                                                                                                                                                              >  1:825542/1‑238 (MQ=255)
agaagTAATCCCGTTCTGATATAGCTGGCGACCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTTCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GGAACCTCCCCCCGCTTCTTTC‑CCCAG‑ATATCCGGATGCCAg                                                                                                                                                                                                                                              >  1:20550/1‑238 (MQ=255)
            gTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGGTCGCGTTCCGCCGCCCCG‑GCTTTTACCGTACCCCAGCGGGGA‑GTAACCCCCGCCCCATTCTTTT‑CCCAG‑ATATCGAGATCCCACCCCCCCGTTAAg                                                                                                                                                                                                                                  >  1:817556/1‑238 (MQ=255)
            gTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCCGTTCGCCGCCCGG‑GCTTTAACCGTACCCAGGCGGGCA‑GGAAACTCCCCCCGATTCTTTC‑CCCCC‑ATATCGCGATCCCAGccccccctctag                                                                                                                                                                                                                                  >  2:1436285/1‑232 (MQ=255)
             ttCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGGTTCGCCGCCCGT‑GCTTTAACCCTAACCCGGGCGGCC‑GTAACCTCCGCCCCCTTTTTTC‑CCCCG‑GTAACCAGGTGCCCACCCGCCCtttacc                                                                                                                                                                                                                                 >  1:674032/1‑234 (MQ=255)
                    ataGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCCCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTa                                                                                                                                                                                                                         <  1:1145014/239‑1 (MQ=255)
                          ggCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTTCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCC‑GTAACCTCCGCCCGCTTCTTTT‑CCCAG‑ATATCGAGATGCCACCCCCCCCGTAACCCAAAAAGACCggtt                                                                                                                                                                                                                   >  1:1397462/1‑236 (MQ=255)
                            cGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCCGGCGGGCA‑GTAACCTCCGCCCGGTTCTTTT‑CCCCG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAAGACCCTTGgt                                                                                                                                                                                                                 >  1:21824/1‑239 (MQ=255)
                            cGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCGTTCCCCCCCCCCG‑GCTTTTACCCTCCCCCAGCGGGGC‑GTAAACCCCCCCCCCTTTTTTT‑CCCCC‑ATATCCAGATGCCCCCCCCCCCTTCAGCCCAAAGTACCGTTggg                                                                                                                                                                                                                 >  2:1145014/1‑238 (MQ=255)
                            cGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTGCGCCGCCCCG‑GCTTTAACCCTACCCCGGCGGGCC‑GTAACCTCCCCCCGCTTCTTTT‑CCCCG‑ATATCGAGATGCCCGCCCGCCCCTAAGCCAAAAAAACCGTTggg                                                                                                                                                                                                                 >  2:765136/1‑238 (MQ=255)
                            cGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCCCGGTCCCCCCCCCCT‑GCTTTTACCGCACCCCGGCGGGGA‑GGAAACTCCCCCCGGTTTTTTT‑CCCCG‑AAATCCCGATGGCACCCCCCCGTTTAACCacacacaccgtcggc                                                                                                                                                                                                                 >  2:338639/1‑225 (MQ=255)
                                       tataggggTGTTCTTCTCTTTTTCTATTCTCGGAAAGCCGGTGTGTACCGCCGCCGGGTTGTGCCACTCCCAGTCCGGGCGGGCT‑ACGCTGCCAGCCGGCATTTGGCGGGTTTGCTCGCGTTCCCCCGCCGGT‑GCTTTAACCGTACCCAGGGGGGCA‑GAACCCTCCGCCCGTTTCTTCC‑CCCAG‑ATATCGAGAGGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACggg                                                                                                                                                                                                       <  2:319237/232‑1 (MQ=255)
                                       gttatgggTGTCGTGCTTTTTTTCTTTTGGCCGCAAGACTGTGTTTAACGCCGCCTGGGTTGGCCACTCCCAGT‑CAGGGCGGCTGCCGCGGCACGCCGGCATTTGGGGGTTTTGCTCCCGTTCCGCCGCCCGT‑GTTTTAACCGTCCCCGGGGGGGAA‑GTACCCCCCGCCCGATTCTTTC‑CCGAG‑ATATCGGGAGGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACggg                                                                                                                                                                                                       <  2:427549/232‑1 (MQ=255)
                                       gtaaagggtttttgtttttttttCTGTTGCCTGCAAGACCGTGTTAAACCCCCCCGGGGTTTGCCACCCCCAGGACGGGGGGGCT‑CCGCTGCAGGCCAGCAATGGGGGGGTTGGCCCGCTTTCCGCCGCCCGT‑GCTTTACCCGTCCCCAGGGGGGCA‑GTACCCCCCCCCCGATTCTTCC‑CCCAG‑ATATCGAGAGGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACggg                                                                                                                                                                                                       <  2:975347/220‑1 (MQ=255)
                                                 ttCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTCCCCCGCCCCG‑GCTTTTACCCGACCCAGGCGGGGA‑GTAAACCCCGCCCGCTTCTTTT‑CCCCG‑ATATCCAGATGCCAGCCCCCCCTTTAACCAAAAAAACCCTTGGTGTAACCCGGGCCgggccgac                                                                                                                                                                                             >  2:1039156/1‑232 (MQ=255)
                                                      tttttttttttttTGCGACAAGCCTGTGTTTACCGCCGCCGGGGTTGCCCCCTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGTTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCGGGGGGGCA‑GAACCCTCCGCCCGATTCTTCC‑CCCAG‑ATACCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCgg                                                                                                                                                                                       <  2:163724/236‑1 (MQ=255)
                                                        ctTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCCTTCCGCCCCCCCT‑GCTTTTAACCTACCCAGGGGGGCA‑GTAACCTCCCCCCCGTTCTTTC‑CCCCG‑ATATCGAGATGCCCGCCCGCCGTTTAGCCAAAAACACCCGTGGTGGTCCCCGGGCCCGtacgcccctccgcc                                                                                                                                                                                     >  2:443943/1‑226 (MQ=255)
                                                         tttttCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCCCGCGGTTCCCCGCCCCG‑GCTTTTACCGTACCCCGGGGGGCA‑GTAACCTCCCCCCGCTTCTTTC‑CCCCG‑ATAACCAGATGCCCGCCCGCCCCTTAACCAAAAGTACCCTTTGGGTACCCCGGGCCGGCGGGCCCTGCGGCCg                                                                                                                                                                                    >  2:921627/1‑239 (MQ=255)
                                                           tttCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTTCTCGCGTTCCCCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCC‑GTAAACTCCGCCCGGTTCTTTC‑CCCCG‑ATATCGAGATGCCAGCCCGCCCTTTAACCCAAAATAACCTTTGTGTACCACCGGCCCGTCTTACCTTCGGCCggg                                                                                                                                                                                  >  1:1468288/1‑238 (MQ=255)
                                                                         aaGACCGTGTTTAACGCCGCCTGGGTTTGCCCCTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTCCCCAGGCGGGCA‑GTACCCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑aaa                                                                                                                                                                  <  1:1157632/239‑1 (MQ=255)
                                                                             cggtgtTAAACCCCCCCTGGGTTCGCCCCCCCCAGTACAGGCGGGCT‑CCGCCGCCCGCCAGCAATGGGCGGGTTTGCCCGCGTTCCGCCGCCCGT‑GTTTAACCCGTCCCCAGGCGGGCA‑GTACCCCCCGCCCGATTCTTCC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACgg                                                                                                                                                               <  2:527313/236‑1 (MQ=255)
                                                                             ccgtttgaaaCCCCGCCTGGGTTGGCCACTCCCAGTACAGGCGGACT‑CCGCTGCCGCCCAGAAATTGGCGGGTTTGCTCGCGTCCCGCCCCCCGT‑GTTTTACCCGTCCCCGGGCGGGCA‑GAAACCCCCGCCCGTTTTTTCC‑CCCAG‑ATACCAAGAGGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACgg                                                                                                                                                               <  2:627955/230‑1 (MQ=255)
                                                                             ccGTTTTTACCGCCGCCTGGTTTTGCCCCCCCCAGTACAGGGGGGTT‑ACGCTGCCGGCCAGCAATTGGGGGGTTTGCCCGCGTCCCGCCGCCCGT‑GCTTTACCCGTCCCCAGGGGGGCA‑GTACCCCCCGCCCGATTCTTTC‑CCAAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACgg                                                                                                                                                               <  1:1436285/238‑1 (MQ=255)
                                                                                tgtTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCCCGTTCCGCCCCCCCG‑GCTTTTACCGTACCCAGGCGGGCC‑GGAACCCCCCCCCCCTTCTTTT‑CCCCA‑ATATCGAGATGCCCGCCCCCCCGTAAGCCCAAAAGACCGTTGGGGTAACCCGGGCCGGGCGTACCTGCGGCCGGGGCGTTCACA‑GC‑CAAcacccc                                                                                                                                                            >  2:18849/1‑233 (MQ=255)
                                                                                       cgccgcCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTTCCCCGCCCCC‑GCTTTTACCGTAACCAGGCGGGCA‑GTAACCCCCCCCCGCGTCTTTT‑CCCCG‑AAATCGAGATGCCCACCCCCCGGTTAACCAAAAGTAACGCTGGTGTTCCCCGGGCCCGGCCCACCTCCTGCCCGGTCGTTCCGC‑GC‑AAACGGCCCCCTTTAg                                                                                                                                                     >  2:915931/1‑238 (MQ=255)
                                                                                            ccTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGAGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCt                                                                                                                                                  >  1:852293/1‑236 (MQ=255)
                                                                                                           cccAGTACGGGCGGGCT‑ACGCGGCCAGCCAGCAATTGGCGGTTTTCCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTCCCCAGGCGGGCA‑GTACCCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGc                                                                                                                                <  2:732940/239‑1 (MQ=255)
                                                                                                           cccAGTACGGGCGGCCT‑CCGCTGCCAGCCAGCAATTGGCGGTTTTGCCCGCTTTCCGCCGCCCGT‑GCTTTACCCGTACCCAGGCGGGCA‑GTACCCCCCGCCCGATTCTTCC‑CCCAG‑ATACCGAGATGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGc                                                                                                                                <  2:1435488/239‑1 (MQ=255)
                                                                                                           ccagtcgcAGGCGGCGT‑CCGCTGCCAGCCAGAATTGGGCGGGTTTGCTCGCGTCCCGCCGCCCGT‑GCTTTACCCGTCCCCAGGCGGGCA‑GTAACCCCCCCCCGATTCTTCC‑CCAAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGc                                                                                                                                <  2:1174955/232‑1 (MQ=255)
                                                                                                            cccagccgcggctgcgtcctcagcccgccaGAGATGGGCGGTTTTGCCCGCGTCCCCCCGCCCTC‑TCTTTACCCATCCCCAGGCGGGTA‑TGACCCCCCCCCCGTTTCTTCC‑CCCAT‑ATATCGGTTTCCCCCTCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGc                                                                                                                                <  2:222568/217‑1 (MQ=255)
                                                                                                                          cT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTTCTCCCGTTTCGCCCCCCGT‑GCCTTTACCCTACCCCAGCGGGCA‑GTAACCCCCCCCCCCTTCTTTT‑CCCCA‑ATATCGAGATGCCCGCCCCCCCTTTAACCCAAAAAACCCTTGGTGTACCACCGGCCCGGCGGACCTTCGGCCCGGGCGTTCCAA‑GC‑AAAAGGCCCCCAT‑TGCCCTCTGCCGCCATTTTTTTCCGCCCCctattcccc                                                                                                                 >  2:751298/1‑233 (MQ=255)
                                                                                                                          cT‑ACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCCGGTTCCCCCGCCCCTGGCTTTAACC‑TAACCCGGCGGGGAGGAAACCCCCCCCCCGTTTTTTC‑CCCA‑‑ATATTGAGATGGCAGCCCCCCCCTAAACCCAAAAAACCGGTGGGGTAACACCGGGCGCTCGTAACCGCGGCCCGCGCGGTCCCAGGA‑AAACGGCCCCATTAAGCCTCCTGCCCACATTTTTTGcgaccccacacccc                                                                                                                   >  2:611784/1‑225 (MQ=255)
                                                                                                                                   ccagccagCAATTGGGGGGTTTGCTCGCGTCCCGCCGCCCGT‑GTTTTACCCGTCCCCAGGCGGGCA‑GTACCCCCCGCCCTATTCTTTC‑CCCAG‑ATATCGAGATGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTc                                                                                                         <  1:1039156/239‑1 (MQ=255)
                                                                                                                                    cagccagcAATGGGGGGGTTTGCCCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTACCCCCCCCCCGATTCTTCC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCg                                                                                                        <  1:41961/239‑1 (MQ=255)
                                                                                                                                        cagcAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTAAACCGTCCCAAGGCGGGCA‑GTACCCTCCGCCCGATTCTTCC‑CCCAG‑ATAGCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCt                                                                                                    <  1:1498403/239‑1 (MQ=255)
                                                                                                                                         agcAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTAc                                                                                                                                                                                                                        >  2:1311397/1‑124 (MQ=255)
                                                                                                                                         agcAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTAc                                                                                                                                                                                                                        <  1:1311397/124‑1 (MQ=255)
                                                                                                                                            aaTTGGCGGGTTTGCTCGCGTCCCGCCGCCCGT‑GCTTTACCCGTCCCCGGCCGGGCA‑GTACCCCCCGCCCGATTTTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCgg                                                                                                <  1:231665/239‑1 (MQ=255)
                                                                                                                                             tgtgggggttgtGCGCGCGTCCCGCCGCCCGT‑GTTGTACCCGCCCCGGGGGGGGAA‑GTCCCCTCCGCCCGATTCTTCC‑CCCAG‑GTTTCGAGCTGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGa                                                                                               <  2:1107875/228‑1 (MQ=255)
                                                                                                                                             atgggCGGGTTTGCCGGCGTCCCCCCGCCCGT‑GTTTTACCCGTCCCAGGGCGGGCA‑GTACCCCCCGCCCGATTTTTTC‑CCCGG‑ATACCGAGAGGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGa                                                                                               <  1:765136/236‑1 (MQ=255)
                                                                                                                                             aTTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTATCCAGGCGGGCC‑GTAACCTCCGCCCGGATCTTTC‑CCCCG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACCGGCCGGTCGTACCCGCGGCCGGGTCGGTCAGA‑GCAAAACGGCCCC‑TTCACCCCTCTCCCGCCCTTTTTTTCCGCCCCACTTCCTCCCGAAATTCGATCTggcg                                                                                                >  2:548632/1‑235 (MQ=255)
                                                                                                                                                     gtgtccTCGCCTTCCCCCGCCTGC‑GCTTTACCCGTCCCCGGGGGGGCA‑GTACCCCCCGCCCGTTTCTTCC‑CCCAG‑ATCTCGAGATCCCACCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCt                                                                                        <  2:1366499/233‑1 (MQ=255)
                                                                                                                                                              cgTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCa                                                                                >  1:1471935/1‑237 (MQ=255)
                                                                                                                                                               gTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCa                                                                                >  1:489463/1‑236 (MQ=255)
                                                                                                                                                                        cccTT‑GCTTAATCCTCACCAAGGGGGGCG‑GAACCCCCCGCCCGA‑TCTTTC‑CCCCGTAATTGGGGACCCCACCCCGCCGTTAAGCCAAAAGTACCGTGGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGTCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGcc                                                                    <  2:233988/239‑1 (MQ=255)
                                                                                                                                                                                 ttAACCGTCCCGGGGCGGGCA‑GTACCCCCCGCCCGTTTCTTCC‑CCCAG‑ATATCGAGATGCCCGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTc                                                            <  1:921627/239‑1 (MQ=255)
                                                                                                                                                                                      cacccccAGGCGGGAA‑GAACCCGCCCCCCAATTCTCTC‑CCAGA‑ATCTCGGGATGCCACCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                                                       <  2:548366/235‑1 (MQ=255)
                                                                                                                                                                                        tACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGCCCATCCTGAGGCGCAACTGCCTTCGCCTGGGCTTCagcta                                                       >  1:585087/1‑237 (MQ=255)
                                                                                                                                                                                        tACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                                                       >  2:725360/1‑237 (MQ=255)
                                                                                                                                                                                         ccccAGGCGGGCA‑GTACCCTCCCCCCGATTCTTTC‑CCCAA‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagctagct                                                    <  1:656284/238‑1 (MQ=255)
                                                                                                                                                                                         aCCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGCGCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                                                       >  2:1176574/1‑236 (MQ=255)
                                                                                                                                                                                         aCCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                                                       >  2:813113/1‑236 (MQ=255)
                                                                                                                                                                                          cccgcggtgggcagctcccccgccccGATTCTTCC‑CCCAA‑ACGACGAGAGCCCTGACCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCCCGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagctagct                                                    <  2:1362120/216‑1 (MQ=255)
                                                                                                                                                                                                 gggagcgaacccgccGCCCGATTCTCCC‑CCCAG‑TTGACGACAGGCCGCCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgc                                              <  2:817556/225‑1 (MQ=255)
                                                                                                                                                                                                 ggccA‑GTAACCCCCGCCCGTTTTTTCC‑CCCAG‑ATATCGAGAGGCCGCCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgcg                                             <  1:415309/235‑1 (MQ=255)
                                                                                                                                                                                                  ggCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGCGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAATCCTTCTGCCGCCATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGCTCTGCGGACCCTCCTGAGTGGCCACTGCCTTCGCCTGGGCTTCAGCTAGCTGaa                                                 >  1:376034/1‑233 (MQ=255)
                                                                                                                                                                                                  ggCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgc                                              >  1:1089387/1‑236 (MQ=255)
                                                                                                                                                                                                  gcgcgtcacccTCCGCCTGATTCTTCC‑CCCAG‑AAACCGAAGTCCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgcg                                             <  2:1327151/229‑1 (MQ=255)
                                                                                                                                                                                                        acccccccGCCCTATTCTTCC‑CCCAG‑TCAGCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGtt                                        <  2:1397462/231‑1 (MQ=255)
                                                                                                                                                                                                          aCCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTCGGCTTCAGCTAGCTGACTGCGCTGTTCAg                                     >  2:1333063/1‑238 (MQ=255)
                                                                                                                                                                                                           ccTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGcc                                   <  1:443943/239‑1 (MQ=255)
                                                                                                                                                                                                            ccccccccTATTCTTCC‑CCAAG‑ATACCGGGGCGCCGCCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCa                                  <  2:852293/234‑1 (MQ=255)
                                                                                                                                                                                                            ccccGCCCGATCCTTCC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCa                                  <  1:1096667/237‑1 (MQ=255)
                                                                                                                                                                                                            cTCCGCCTG‑TTCTTTCGCCCAA‑ATAACGAGAGCCCGCCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCa                                  <  2:21824/239‑1 (MQ=255)
                                                                                                                                                                                                              cccccgtaTTCTTCC‑CCCAG‑ATACCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCAcc                                <  1:1020952/232‑1 (MQ=255)
                                                                                                                                                                                                              ccGCCTGCTTCTTCC‑CCCAG‑TTACCGAAGCGCCACCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCAcc                                <  1:200105/239‑1 (MQ=255)
                                                                                                                                                                                                              ccGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTAc                                                                                                                                                                                             >  1:1098425/1‑84 (MQ=255)
                                                                                                                                                                                                              ccGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGCCCTTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGCATGCGCTGTTCAGCCa                                  >  1:240339/1‑237 (MQ=255)
                                                                                                                                                                                                              ccGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCCTCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCAcc                                >  2:1228007/1‑239 (MQ=255)
                                                                                                                                                                                                              ccGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCACCTCGCTGAATGCGCTGTTCAGCCa                                  >  2:1344602/1‑237 (MQ=255)
                                                                                                                                                                                                               cGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTAc                                                                                                                                                                                                                        >  1:1004159/1‑56 (MQ=255)
                                                                                                                                                                                                               cGCCCGATTCTTTC‑CCAAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTAc                                                                                                                                                                                                                        <  2:1004159/56‑1 (MQ=255)
                                                                                                                                                                                                                gCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGa                                                                                      >  1:356404/1‑183 (MQ=255)
                                                                                                                                                                                                                  ccGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATccg                                                                                                                   <  1:790124/152‑1 (MQ=255)
                                                                                                                                                                                                                  ccGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATccg                                                                                                                   >  2:790124/1‑152 (MQ=255)
                                                                                                                                                                                                                  ccGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCa                            >  1:237839/1‑239 (MQ=255)
                                                                                                                                                                                                                        cTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCg                      <  1:360083/239‑1 (MQ=255)
                                                                                                                                                                                                                        cTTCC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCg                      <  1:122780/239‑1 (MQ=255)
                                                                                                                                                                                                                         tttC‑CCCAG‑ATATCGAAATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATT‑AGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGt                    <  1:751298/239‑1 (MQ=255)
                                                                                                                                                                                                                         tttC‑CCAAG‑ATTCGGAGATGCCGGCCCGCCGTTAAGCC‑AAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGt                    <  1:1067970/239‑1 (MQ=255)
                                                                                                                                                                                                                          tcc‑cccAG‑AATCCGTGATCCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGt                    <  2:414480/237‑1 (MQ=255)
                                                                                                                                                                                                                          tcc‑ccaAG‑AAATCTAGCTGCCTGTCACCCTTTAATCCAAAAGTACCGTTGGTGGACCCCGGCCCGGTCTTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCGACCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGt                    <  2:813706/237‑1 (MQ=255)
                                                                                                                                                                                                                           tC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAACGCCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCAGGt                    >  2:873128/1‑238 (MQ=255)
                                                                                                                                                                                                                            tccccacgatcgcgggtggcgcgCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGt                    <  2:674032/217‑1 (MQ=255)
                                                                                                                                                                                                                            tccccaagatgcggaggTGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGt                    <  2:1536699/226‑1 (MQ=255)
                                                                                                                                                                                                                              cccAG‑ATATGGAGATGCCCGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCg                 <  1:484395/239‑1 (MQ=255)
                                                                                                                                                                                                                               ccaaataatgaagggcccggCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCg                 <  1:548632/220‑1 (MQ=255)
                                                                                                                                                                                                                                 aacatatCGAGAGCCCTCCTCGCCGTCAACACAAGAGTACCGGAGGCGTACCTCGGCCCCGTCGTTCCTGCGGCCGGGTCGATCAGA‑GC‑AAACGGCCCCATAAAGCCCTCTGCCGACATTTTTTGCCCCTCCATATCCGCGGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTGCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATAGCCGGTGCGtt               <  2:585087/236‑1 (MQ=255)
                                                                                                                                                                                                                                  g‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGt                >  1:1428404/1‑236 (MQ=255)
                                                                                                                                                                                                                                         gagttcccggCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTg       <  2:1468288/230‑1 (MQ=255)
                                                                                                                                                                                                                                           gaggcgtgCCCGCCGTTAAGCCAAAAGTGCCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCTATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCGCCTGCATATCCGGTGCGTTCTGTAGTGc      <  1:914841/231‑1 (MQ=255)
                                                                                                                                                                                                                                            aTGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCAt    >  1:361812/1‑239 (MQ=255)
                                                                                                                                                                                                                                             tcccAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCAt    <  1:600031/236‑1 (MQ=255)
                                                                                                                                                                                                                                             tGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCAtt   <  1:200640/239‑1 (MQ=255)
                                                                                                                                                                                                                                              gCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagc                                                         >  1:17351/1‑184 (MQ=255)
                                                                                                                                                                                                                                              gCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgcg                                             >  2:861306/1‑196 (MQ=255)
                                                                                                                                                                                                                                              gCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgcg                                             <  1:861306/196‑1 (MQ=255)
                                                                                                                                                                                                                                              gCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCATTg  >  1:1308312/1‑239 (MQ=255)
                                                                                                                                                                                                                                              gCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCATTg  >  1:1197613/1‑239 (MQ=255)
                                                                                                                                                                                                                                               ccAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCATTg  <  2:1308312/238‑1 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                            
AGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCT‑ACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGT‑GCTTTAACCGTACCCAGGCGGGCA‑GTAACCTCCGCCCGATTCTTTC‑CCCAG‑ATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGA‑GC‑AAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCCGGTGCGTTCTGTAGTGCATTG  >  NC_000913/2228071‑2228542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A