Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F108 I1 R1 11 40.8 1469306 91.3% 1341476 142.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,619,080 Δ35 bp intergenic (‑172/‑6) marC ← / → marR UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1619080 1619114 35 50 [0] [1] 51 marC/marR UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16190790 (0.000)47 (1.210) 44/272 0.0 99.0% intergenic (‑171/‑41) marC/marR UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance
?NC_000913 1619115 = 1 (0.030)intergenic (‑207/‑5) marC/marR UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

GATK/CNVnator alignment

N/A