Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I0 R1
|
54 |
59.4 |
1320120 |
91.9% |
1213190 |
218.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,145,056 |
T→G |
20.0% |
G597G (GGT→GGG) |
yegE → |
putative diguanylate cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,145,056 | 0 | T | G | 20.0%
| 95.4
/ 5.3
| 51 | G597G (GGT→GGG) | yegE | putative diguanylate cyclase |
| Reads supporting (aligned to +/- strand): ref base T (12/27); new base G (10/2); total (22/29) |
| Fisher's exact test for biased strand distribution p-value = 2.11e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGAATAAAGAAGGCGAAGTCGAACGTCTCCTCGGCATCAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGACGGCAGCAATATTGGTTCGGTTCTGGTGATTCAGGACGTTACCGAATCACGCA > NC_000913/2144835‑2145282
|
aggAATAAAGAAGGCGAAGTCGAACCGTTCCTCGGCATAAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCg < 1:72928/226‑1 (MQ=255)
ggCGAAGTCGAACGTCTCCTCGGCATCAATATGGATATGGCCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAAGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑Ggtg < 2:173339/228‑1 (MQ=255)
gCGAAGTCGAACGTCTCCTCGGCATCAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGTGAAGATGGGCGGCTGGAAGCAGGAAGAAACGTTAGTGGTTcc > 2:72928/1‑214 (MQ=255)
gCGAAGTCGAACGTCTCCTCGGCATCAATATGGATATGACCGAAGTGAAACAGCTTAAAGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGTTATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAAATGAGCGGCTGGACGCAGGAAGAGACGTTTGGTGTTCCGCTCCTGCC‑Ggtgt > 2:133217/1‑228 (MQ=255)
gAAGTCGAACCTCTCCTCGGCATCAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑g < 2:542050/228‑1 (MQ=255)
ctcctcGGCATCAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTTCGCTCCTTAC‑GGTGTT‑GCATATTACttt > 2:506086/1‑227 (MQ=255)
ggCATCAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGCGAAGATGAGCGGCTGGCCGCAGGAAGACGCGTTAGGGGGTCCGTTCCTGAC‑GGGGTT‑GCATATTACTTTTgtggca > 2:71643/1‑223 (MQ=255)
caataaTATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTTTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACaa < 1:444887/224‑1 (MQ=255)
cATTAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACaa < 2:247304/228‑1 (MQ=255)
tCAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGTGAAAACGGGCGGCGTGACGCCGGAAAAAAACGTGGGGGTTCCGGCCCTCAC‑GGGGTT‑GCAAAATAATTTTGGCGCAAACg > 1:268028/1‑228 (MQ=255)
cAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACgg > 2:611484/1‑228 (MQ=255)
aaaTATGGATATGGCCGAAGTGAAACAGCTTAAAGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTTCGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACgg < 1:621125/227‑1 (MQ=255)
gATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGGAGCAGGAAAAAGCGTTAGGTGGTCTGCTCCTGAC‑GGGGTT‑GCAAATTAATTTTTGCGGCAAAgggaaacta > 1:247304/1‑221 (MQ=255)
tGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTTCCCTCCTGGCGGGTGTT‑‑CAATGTACTTTTTGCGACCACGGAACATTAATgg > 2:282066/1‑228 (MQ=255)
tGACCCGAGTGAAACCGGTTAACGGGGCATTGTTTCAGGAAAAAGAGCGTCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATgg < 1:127592/228‑1 (MQ=255)
aCCGAAGTGGAACAGGTTAAGGTGGGTTTGGTTCAGGAAAAAAGGCGCCTGGACATTACGCTTGCTTCCATCGGTGAAGCCGTGGTCTGGAGTGAGATGGCGATGAAAATTACCTGTATGAATCCAGTGGGGTAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGTC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGgag < 1:225211/228‑1 (MQ=255)
aCCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGGGTTCCGCCCCTGAC‑GGGGTT‑GCAAATTACTTTTGGCGACAACGGACCCTTAATgggg > 2:438579/1‑226 (MQ=255)
aaGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGGCTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGaaaa > 2:65693/1‑226 (MQ=255)
aCAGTTTAACGAGGCAGTGTTTTAGGAAAAAGGTCGCCTTCAAATTACGGTTGATTCCATCGGTGAAGCCGTGGTCTGTAGTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTAc < 2:606750/226‑1 (MQ=255)
cTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAAATGAGAGGGTGGACGCAGGGAGAAGAGTTAGTGGTTCCGCTCCCGGC‑GGGGTT‑GCCTCATACTTTTTGCGACACAGGACCCTTAAAGGAGAACATTTTCaaagcc > 1:326143/1‑223 (MQ=255)
cATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAATAAGCGTTAGGGGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTTGCGACAACGGACCATTAATGGAGAAAATTTAAAGTGCCGACACCTCAc > 2:481668/1‑228 (MQ=255)
aTTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGGGGCCGGACCGCGGAAGAATCGTTTGGGGTTCCGCTCCCGCG‑GGGGTTCGCA‑ATTTCTTTTTGGGCCAACGGGCCATTAATGGGGAGCAATTACAATGCCGAACCCTccac > 1:489214/1‑225 (MQ=255)
tCAGGAAAAAGGTGGCCTGCACATTACGCTTGATTCCAGCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCcgc < 1:479666/228‑1 (MQ=255)
aaGAGCGCCTGCACATTTCGCTTGATTCCAGCGGTTAAGCCGTTGTCTGTATTGATATGGCGATGAAAATTTCCTTTATGAATCCAGTGGCGGAGAAGATGTGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGc < 1:71643/228‑1 (MQ=255)
aaGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCCGTGGCGGGAAAGATGAGCGGCTGGAAGCAGGAAGAAGCGTTAGGTGTTCCCCTCCTTGC‑GGGGTT‑GCAGATTACTTTTTGCGACAACGGACCATTACTGGAGGACATTTACAGTTCCGACCCCCCAcactacccgataccgc > 1:464469/1‑213 (MQ=255)
cTGCCCATTACGGTTGATTCCATCGGTTAAGGCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTAGGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGAtg < 1:438579/226‑1 (MQ=255)
cTGCATATTCCGCTTTATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTAGGAAGCCAGTGGCGGAGAAGATGGGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGAtg < 1:481668/226‑1 (MQ=255)
ccGTGTTTTGTTTTGATATGGGGATGAAAAATACCTTTATGAATCCAGTGGCGGAGAAGATGAGGGGCTGGACGCAGGAAGAAGGGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTacg < 1:611484/228‑1 (MQ=255)
ttgTCTGTTTTGATATGGCGATGAAAATTTCCTTTAGGAAATCAGTGGCGGGGAAGGTGGGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTacgacg < 1:96415/226‑1 (MQ=255)
gtctgtttttgaatggggcttgaaaTTACCGTTATGAAGTCAGGGGCGGAGAAAGTGAGCGGCTGGCAGCCGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTg < 1:44030/206‑1 (MQ=255)
ggttggatatgatggcggttGAAAATTGACTTTATGAATCCAGGGGGGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTg < 1:529937/209‑1 (MQ=255)
tCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTg < 2:434049/227‑1 (MQ=255)
ttGATATGGCGATGAAAATTCCCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTa < 2:505210/226‑1 (MQ=255)
ttGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑TCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTa < 1:291121/226‑1 (MQ=255)
ttGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTa < 2:489214/226‑1 (MQ=255)
atatGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGGGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGc > 2:153243/1‑113 (MQ=255)
tatGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCg < 1:153243/113‑1 (MQ=255)
tgggtataaaaaTTACCTTTATGGATCCAGGGGCGGGGAAGATTGGCCGTTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCGTGAC‑GGTGTT‑GCATATTCCTTTGGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTa < 1:133217/220‑1 (MQ=255)
gagATGAAATTTTCCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACg < 1:282066/226‑1 (MQ=255)
gCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTTCAGTGCCGCCACCTCCCGTTCCGCGATCGGGCAAGATATGGTGTTGACATTTCGGCGCGGGGGCAGGTTCAACGTGCATAATAGAATTAc > 1:34215/1‑227 (MQ=255)
gCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGGGTTCCGCTCCTGAC‑GGGGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGGGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGGGCAAGATGTGGGGTTGCACTGTCGGAGCGCCGGCAGTTtcgcgctgccttcaagatttac > 2:366618/1‑208 (MQ=255)
gCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGAGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGCCACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAACGGAGGCAGTTACGACGTGCCTTACAGtcattc > 2:495717/1‑222 (MQ=255)
gCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAAGAAAAAGCGTTAGGGGTTCCGCTCCTGGC‑GGGGTT‑GCATATTACTTTTTGCGACAACGGGCCATTAATGGAGAACATTTACAGTGCCGGCACCTCACGTTGCGCGATCGAGAAAGAGGTGGGGTTGGACTGGCGGAGCGGGGGAGGTTacacggcgcagtacagagatac > 1:624742/1‑207 (MQ=255)
aaTTTCCTTTTGGAATCCCGGGGCGGAGAAGAGGGGCGGCGGGGCGCAGGAAGAAGCGTTAGGGGTTCCGCTCCTGAC‑GGTGTT‑GCATATTTCTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAg < 1:366618/228‑1 (MQ=255)
tATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGa < 2:296251/228‑1 (MQ=255)
ggaataggggggggtGGACGGAGGCAGGAGCGTTAGGGTTTCCGGTCCTGAC‑GGTGTT‑GCATATTGCTTTTGGCGGCAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGACGGCAGCAATATTggtt < 1:506086/214‑1 (MQ=255)
aagaTGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGACGGCAGCAATATTggtt < 2:89774/226‑1 (MQ=255)
gACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGGCGTGCATTAAAGTATTACGCCGTTAAGTACCCTGGACGGCAGCAATATTTGTTCGGTTCTGGTGGTTCa > 1:500709/1‑228 (MQ=255)
gACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCAACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGGTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGACGGCAGCACAATTgagtgcgttctgtcgcttcc > 2:136089/1‑209 (MQ=255)
gaGGAAGTAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCAATAATGGAGAACATTTACAGTGCCGACGCCTCACGGTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGACGGCAGCAATATTGGTTCGGTTCTGGTGATTCAGGa < 2:138079/226‑1 (MQ=255)
aGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGCTGTGGTGTTGCACTGTCGGAGCGGCGCCCGTTACGACGTGCCTTCCAGTATTACGCCGTTAAGTACTCTGGCCTGCCGCAATCTTGGTTCGGTTCTTGTGATTCAGGCCGTTACCGAATCAc > 2:221538/1‑227 (MQ=255)
gtgtTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTGGGCGACAACGGACCATTAATGGAGAACATTTGCAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGACGGCAGCAATATTGGTTCGGTTCTGGTGATTCGGGACGTTACCGAATCACGCa < 2:326143/228‑1 (MQ=255)
|
CTGAATAAAGAAGGCGAAGTCGAACGTCTCCTCGGCATCAATATGGATATGACCGAAGTGAAACAGCTTAACGAGGCATTGTTTCAGGAAAAAGAGCGCCTGCACATTACGCTTGATTCCATCGGTGAAGCCGTGGTCTGTATTGATATGGCGATGAAAATTACCTTTATGAATCCAGTGGCGGAGAAGATGAGCGGCTGGACGCAGGAAGAAGCGTTAGGTGTTCCGCTCCTGAC‑GGTGTT‑GCATATTACTTTTGGCGACAACGGACCATTAATGGAGAACATTTACAGTGCCGACACCTCACGTTCCGCGATCGAGCAAGATGTGGTGTTGCACTGTCGGAGCGGCGGCAGTTACGACGTGCATTACAGTATTACGCCGTTAAGTACTCTGGACGGCAGCAATATTGGTTCGGTTCTGGTGATTCAGGACGTTACCGAATCACGCA > NC_000913/2144835‑2145282
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
