Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F17 I0 R1
|
52 |
59.5 |
1410130 |
88.0% |
1240914 |
215.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
908,290 |
T→C |
15.0% |
intergenic (‑8/+3) |
ybjT ← / ← ltaE |
putative NAD‑dependent oxidoreductase/L‑allo‑threonine aldolase, PLP‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 908,290 | 0 | T | C | 15.0%
| 124.8
/ 2.6
| 55 | intergenic (‑8/+3) | ybjT/ltaE | putative NAD‑dependent oxidoreductase/L‑allo‑threonine aldolase, PLP‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (30/14); new base C (3/6); total (33/22) |
| Fisher's exact test for biased strand distribution p-value = 6.66e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAAAATAGACCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGC > NC_000913/908066‑908509
|
gAAAATAGACCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGGGTGCGCACCATATGCTGACCACTGTAGCCACTGGCCCCGGGAACTAAAAAGCGTTGCCGGACGTCTCTCCCCt > 1:88852/1‑228 (MQ=255)
attagcacgttacGATTTCCGTCAACAGGCCCGGTAGGTTATCCGGCCAGCTGAGACTGTGTTTATGGCAATGGACGGTTGCCAGTTGACATTTGGCTAGCAGGGTGCCATGACGGGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCGGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTaa < 1:501780/216‑1 (MQ=255)
cccGTATCGATATCCTTCAAAAGGGCGGGTTGGTTACCCGGCCAGTTGAGATCGCTTTTATGGCAACTGACGTTTGGCAGTTGAAGCTTTGCAAGCCTGTCGCATTGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACgcgc < 1:381211/227‑1 (MQ=255)
aCCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGCTGCCCTTGCTGGCTGAGTGTGCGCACCAGCTGCTGACCAATGTAGCCACTGGCACCGAGAACTACAATCCATTGCGGCCCGTTTCCCTCCCTAAcccc > 1:531814/1‑224 (MQ=255)
aCCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATCCTGACCAATGTAGCCACTGGCCCCGAGAACTAAAATCCGTTGCGGCCCGTCTCTCTCCTTAAcgcg > 2:652725/1‑227 (MQ=255)
aTCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGAGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTTTCCTTAACGCCCCAGGa > 2:368255/1‑228 (MQ=255)
tttccggaagcAGGGCCGGTGGGTTGTGCGGCCATGGCGGATCGACTTTAGGCCAACTGCCGTTGGCCAGTTGCATCTTTGCAGGCGTGTCGAACTGACGTCCCGCTGCCAGTATCTGATGCCCGTGCTGGCTGAGTGGGCGCCCCAGATGCTGACCAATGTAGCCACTGGCCCCGAGATCTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCa < 1:190830/218‑1 (MQ=255)
tCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTACTGCAACTGACGTTTGCCAGTTGCAGCCTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGCCGCCCTTGCTGGCTGAGTGTGCGCCCCAGATCCTGCCCCATTTACCCCCCGGCCCCGCGACCTAAAATCAGTTGCGGCCCCCCTTTCTCCCTacaccccccgacatgccc > 1:171098/1‑210 (MQ=255)
tCCTGAAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCAAGTTGCGGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCa < 2:52781/226‑1 (MQ=255)
tGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATCCTGACCAATGTAGCCACTGGCACCGGGAACTCAAATCCGTTGCGGCCCGTCTCTCTCCTTAACCCCCCAGGCAAGCCCGca > 1:655531/1‑226 (MQ=255)
tGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGGGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCCCCTTAACGCGCCAGGAATGCACGcc > 2:473543/1‑227 (MQ=255)
tGCAACAGGGCCGGTAGGTTAACCGGCCAGCTGAGATCGTCTTTATGGCACCTGACGTTTGCCAGTTTCAGTTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCa < 2:627253/228‑1 (MQ=255)
cgttcggTTACCCGGCCGGCTGAGTTCGCCTTTATGGCACCTGACGTTTGCCAGTTGCAGCTTTGCAAGCTTGTCGACATGACGTGCCGCCGCCAGGAGCTGAGGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGa < 2:419326/223‑1 (MQ=255)
aGGTTACCCGGCCAGCTGAGATCGACTTTATGGCAACGGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTggctacattggtc < 2:88852/228‑12 (MQ=255)
accgggCCAGCTGGATTCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGcc < 2:531814/223‑1 (MQ=255)
ggCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGGGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAACGCACGCCAGTGGCCGGCCACTTCCGccgctt > 2:223582/1‑223 (MQ=255)
ccAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAAGGCGTTGCGCCACGTCCCTCTCCTTAACGCGCCAGGAATGCACCCCAGTGGGCGGCCACTTCCCCCCgttgt > 2:448745/1‑227 (MQ=255)
aCTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCACCAGGAATGCACGCCAGTGGGCGGCGTCTTCCGCCAGTTGTTCGCGCGAGACGTAACGATGCGTCa > 2:345879/1‑228 (MQ=255)
aCTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACCGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCAAGTGGGCGGCGACTTCCGCCAGTCGTTCGCCCGAGAGGTCAAGATCCGCCa > 2:654061/1‑228 (MQ=255)
cTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGCAGCCACCGGCACCGAGACCTAAAATGCGTTGCGGCCCGCCTCTCTCCTTAACGCCCCAGGCTTGCACGCCAGGGGGCGGGCAATCCCCCCGCTTGCTCGCGCGAGACGTccaactgcgcca > 1:601446/1‑216 (MQ=255)
cTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCGGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCCCTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAgg < 2:520404/228‑1 (MQ=255)
aTGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGTTGCGTCACCAGGCGGCCAATCGCCCAGCCGTTAATCAGCACGTTtc > 2:608825/1‑228 (MQ=255)
ccgccgccAGGA‑CTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGAATCGTACCCAGGCGGACAATCGCCCAGGCGTTAATAGGCACGTTTCTCGCtttac > 2:594534/1‑226 (MQ=255)
ctggctCTGGTTCCCTTGCGGGCTGAGTTGGCGCCCCAGATGTTGACCAATTTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTAt < 1:431787/222‑1 (MQ=255)
cAGGATCAGATTCCCTGGCGGGCTGGGTGTACGGAGCAGATGCTGACCAATGTAGCCACTGGCACCGAAAACTAAAATGCGTTGCGGCACGTCTCTCGCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTAt < 2:171098/227‑1 (MQ=255)
aTGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCCAGGCGTTAATCAGCACGTTTTTCGCTTTCATGGATTCGCCTAAca > 2:487986/1‑227 (MQ=255)
cccTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCCGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGGCACCAGGCGGACAATCGGCGTGGCTCTAATCAGATCGTTTTCCCCTTTCAGGGATTCGCCTAAagcca > 1:644989/1‑226 (MQ=255)
cTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCCCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGTGGGGTTAATCCGCACGTTTCTCGCGTTCATGTAATCGCCTAACGCGgc > 2:193511/1‑227 (MQ=255)
tGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAACATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCACGTTTTTCTCGCGCGACGGCCAGATGCGTCCCCAGGCGGACAATCGGCGAGCAGTTACGCACACCGATTCTCGTCTTCAGGTATTAACCTaaaggcgaag > 1:386790/1‑219 (MQ=255)
tGCTGGCTGAGTGTGCGCACCAGATGCCGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGgca‑gc < 2:655531/228‑1 (MQ=255)
cgcACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGAGTTCCGCCAGTTGTTCGCGCGAGACGTCAAAAAGCGTCGCCAGGCGGACAATCGCCGAAGCGTTAATCAGCACGTTTCTCGCTTGCAGGTATTCGCCTAACCCGGCAGGCATTTT‑TTCCCCCAc > 1:361318/1‑228 (MQ=255)
cgcACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCCTTTTCTTCCCCGa > 2:32921/1‑227 (MQ=255)
gcccaaGATGCTGACCAATGTAGCCACTGGCAACGAGAACTAAAATGCGTTGCGGCACGTCTTTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGAcg < 2:146046/223‑1 (MQ=255)
gCTGACCAATTTAGCCCCTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCGCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGaacaaa < 2:517811/227‑1 (MQ=255)
gACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAg > 2:520821/1‑227 (MQ=255)
gACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTCCTCGCTTTCATGTATTCGCCTAACGCGGCA‑CCATTTCCTTCCCCCACCCCAACAAACAg > 1:432503/1‑227 (MQ=255)
cccatttttgcccgtGGCACCGAGGACAAAAATGCGTTGCGGCACGTCCCTCCCTTTACCGCGCCAGGAATGCCCGCCAGTGGGCGGCGACTCCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCa < 1:520821/214‑1 (MQ=255)
ccACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTGAATCAGCACGTTTCTCGATTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAACCAGCATATTgggtt > 2:340384/1‑224 (MQ=255)
aCTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCAAGTTTCTCGCTTTCATGAATCTCCCTACGCCGGCA‑GCATTTCCTTCCCCCCCCCGCACAAACCGCATATTGGTGTcc > 1:275374/1‑227 (MQ=255)
ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGTCA‑GCATTTTCTTCCCCGCCGCGCACACAACGCATATTTGTGTCCTGa > 2:414249/1‑227 (MQ=255)
ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGa > 2:104732/1‑227 (MQ=255)
ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGAA‑GCATTTTCTTCCCCGCCGCGAACAAACAGCATATTGGGGTCCCGa > 1:513626/1‑227 (MQ=255)
ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGAATTCGCCTAACGCGGCC‑GCATTTTCTTCCCCGCCGCGCACAAACCCCAAATTggggcccgtac > 1:540941/1‑219 (MQ=255)
ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCCCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGCCGCGAACAACCAGCATATTGGTGTCCTgc > 2:70287/1‑226 (MQ=255)
ggcacaaCTAAAATTGTTTGGGGCCCGTCTCTCCCCCTAACGCGCCAGGAATGCACGCCAGTGGGGGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCAt < 1:440299/223‑1 (MQ=255)
acGAGAACTAAGATGCGTTGCGGCACGTCTCCCTCCTTAACGGGCCAGGAATGGCCGCCGGTCGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCCGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCAt < 2:532257/227‑1 (MQ=255)
aaaTGGCTTGCGGCACGGCGCTCCCCTTAACGCGCCAGGAATGCCCGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCCCCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCcgc < 2:275374/227‑1 (MQ=255)
aaaTGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCCTGTATTCCCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATGGGTGTCCTGCCGCCTCACATcccc > 1:370380/1‑225 (MQ=255)
attggtttGCGGGCCGTCTCCCCCTGTAACGGGCCCGGAACGCACCCCGTGGGGCGGCGACTTCCGCCAGGTGGTCGCGCGAGGCGGCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTGCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCgcgc < 1:193511/222‑1 (MQ=255)
acggccttGCGGCCGGTCTCGCCCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCgcgc < 2:540941/222‑1 (MQ=255)
tGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCCCCTgtcc > 2:440299/1‑224 (MQ=255)
tGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGCCGTTAATCAGCACGTTTCTCGCttt > 2:222964/1‑138 (MQ=255)
gcccGTCTCCTTCCTTAACGCGCCAGGAATGCACGACAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGTCGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGc < 2:644989/225‑1 (MQ=255)
aCGTCTCTCCCCTAACCGCGCCAGGAAGGCCCGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAg < 2:361318/228‑1 (MQ=255)
cGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGGCAATCGGCTAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCTGACAAACAGCAGATTGGCGCCCTGACGCCTCACCCCCCGCCCTGCTTAACGccta > 1:654570/1‑225 (MQ=255)
|
GAAAATAGACCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACCAATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCA‑GCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGC > NC_000913/908066‑908509
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
