Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 751,998 C→A 10.0% A58S (GCG→TCG)  ybgQ ← putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913751,9980CA10.0% 314.9 / 4.5 127A58S (GCG→TCG) ybgQputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base C (51/59);  new base A (2/12);  total (53/74)
Fisher's exact test for biased strand distribution p-value = 2.39e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 128 total aligned reads displayed.

GCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACGGTGTCCATACCTGATAAATATTTTATGAAAGGCGGCGATGATGCCGCCAAAAT  >  NC_000913/751760‑752223
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                  
 ccaggcagGCTTGCAGAATACTAATATTCCTTTTAGTACTGGCTTGATCGAAATTGAAGAACATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGGGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCa                                                                                                                                                                                                                                   <  1:1347064/239‑1 (MQ=255)
          cTTGCGGAATACTAATATTCAGTTGCTGATTGCCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTCCTGATTTTGTTGTTATTCACCGCAACGCTAACa                                                                                                                                                                                                                          >  1:614068/1‑239 (MQ=255)
            tGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTAACCGCAACGCTACCaaa                                                                                                                                                                                                                        >  1:1115390/1‑239 (MQ=255)
                     cTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCAcc                                                                                                                                                                                                               <  1:1048670/239‑1 (MQ=255)
                      tAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAatat                                                                                                                                                                                                                    <  1:518225/233‑1 (MQ=255)
                        atatTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCAATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTTTTGTTATTCACCCCAACCCTAAAAAAAAATTAACCggg                                                                                                                                                                                                            >  2:533131/1‑239 (MQ=255)
                               gTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑t                                                                                                                                                                                                     >  1:162512/1‑238 (MQ=255)
                                ttGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTACACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGCTTTTTTTTTTTTTCACCGCAACGCTAACAAAATATTCACCGGGAGAAA‑Tg                                                                                                                                                                                                    >  2:345152/1‑238 (MQ=255)
                                ttGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTTTTTTTATTCACCCCAACGCTAACAAAATATTCACCGGGAGcctgtt                                                                                                                                                                                                    >  2:518225/1‑234 (MQ=255)
                                ttGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTTTTGTTATTCCCCGCCACCCTAACAAAATATTTACAGGGAGCAA‑Tg                                                                                                                                                                                                    >  2:47334/1‑238 (MQ=255)
                                ttGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑t                                                                                                                                                                                                     <  1:1116094/237‑1 (MQ=255)
                                ttGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑Tg                                                                                                                                                                                                    >  1:224381/1‑238 (MQ=255)
                                ttGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAAAGCTAAAAAAATATTTCCCgggggaaagg                                                                                                                                                                                                     >  2:730282/1‑231 (MQ=255)
                                 tGCTTATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGa                                                                                                                                                                                                   <  1:339481/238‑1 (MQ=255)
                                 tGCTGATTGGGTTGATCGAAAGTGAAGAGCATTTGCGGTCGTGAACTGAAATTAATAAACCGATCTATCTGTGGCAAGGACTGACGGATAGCTGGTTTTAAACCAAATTTATCGTACAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTGTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGa                                                                                                                                                                                                   <  1:343841/238‑1 (MQ=255)
                                 tGCTGATTGGCTTTATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTTGGAAGGAATGACGGATATCTGGTTTTAAACCAAATTTATCGTCCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑t                                                                                                                                                                                                     <  1:1290005/236‑1 (MQ=255)
                                 tGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGa                                                                                                                                                                                                   <  2:224381/238‑1 (MQ=255)
                                 tGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGa                                                                                                                                                                                                   <  1:533131/238‑1 (MQ=255)
                                  gCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAAGTCGGGGACTGAAATCAATACACCGATCTATCTGAGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGGTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTTTTATTCACCGAACGGCTAACACAATATTCCCCGGGAGCAA‑TGagc                                                                                                                                                                                                 >  1:383175/1‑237 (MQ=255)
                                   cTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCTACCAGTGAATCATTGCTGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTTTTAACCGCAACGCTAACAAAAAATACACCGGGGGCaaaaaa                                                                                                                                                                                                   >  2:447383/1‑233 (MQ=255)
                                     gATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACCCCt                                                                                                                                                                                              >  1:534116/1‑239 (MQ=255)
                                     gATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTCGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCt                                                                                                                                                                                              >  1:29878/1‑239 (MQ=255)
                                      tttGGCTTTATCGAAATGTAAGAGCATTTCAGGTCGGGAACTGAAATCAATTCACGTATCTATCTGTGGCAAGGACTTACGTATAGCTGGTTTTAAATCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCtt                                                                                                                                                                                             <  2:582303/238‑1 (MQ=255)
                                                tCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTtaa                                                                                                                                                                                   <  1:625834/239‑1 (MQ=255)
                                                 cGAAATTGAAGAGCATTTCAGGTAGGGAATTGAAATCAATACCCCGATCTATCTGTTGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTtaat                                                                                                                                                                                  <  2:614068/239‑1 (MQ=255)
                                                     aTTGAAGGGCATTTCAGGTCGGGAACTTAAATCAATTCACCGATCTTTCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGGTAATCATTGATGCATGGAATGGTTTTGTCT‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATg                                                                                                                                                                              <  2:35171/239‑1 (MQ=255)
                                                     aTTGAAGGGCATTTCAGGTCGGGAACTGAAATCAATACCCCGATTTATCTGTGGCAAGGACTTACGGATATCTGGTTTTAATCCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATg                                                                                                                                                                              <  2:1115390/239‑1 (MQ=255)
                                                     aTTGAAGAGTATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATg                                                                                                                                                                              <  1:1200966/239‑1 (MQ=255)
                                                     aTTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACCCCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATg                                                                                                                                                                              <  1:1303995/239‑1 (MQ=255)
                                                     aTTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATg                                                                                                                                                                              <  1:701597/239‑1 (MQ=255)
                                                     aTTGAAGAAGATTTCAGGTCGGGAACTTAAAGCAATACACCGAATTAACTGTGGCAAGGACTGACGGATATCTGGTTTTAAGCTAAAATTATCGACCAGTGAATCATTGAGGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATg                                                                                                                                                                              <  1:923639/239‑1 (MQ=255)
                                                         aaGAGGATTTCATGTCGGGTACTGAAATCAATACCACGATAGATCTGTGGCAAGGAATGACGGATATCTGGTTTTAACCCAAATTTACCGACCAGTGAATTATTGTTGCATGGAATGGTTTTGTCA‑ACCTTTTTTTGCCA‑GTTAATTTTTTACCCATTACTGATTTTTTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAAGGAAat                                                                                                                                                                          <  1:452321/239‑1 (MQ=255)
                                                             gcctttCAGGTCGGGAACTGAAAGCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAatat                                                                                                                                                                        <  1:796590/234‑1 (MQ=255)
                                                              cATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCACCGCTAACAAATTTTTCACCGGGGGCAA‑TAACTCCTTTTTCCTTTAATAATGAAATATCaa                                                                                                                                                                     >  2:844340/1‑239 (MQ=255)
                                                              cATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTAACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAAAGAAAAATCaa                                                                                                                                                                     >  2:351529/1‑239 (MQ=255)
                                                              cATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGATTTAAACCAAATTTATCGACCAGTGAATCATTGTTGCATGGAATGGTTTTGTCA‑CCCTCTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTAACCGGAAGCAA‑TGATTCATTTTTCCTTTAATAGTGAAATATCaa                                                                                                                                                                     >  2:452321/1‑239 (MQ=255)
                                                                tttCAGGGTGGGAATTTAAATCAATTCACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATg                                                                                                                                                                   <  2:162512/239‑1 (MQ=255)
                                                                 ttCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCTCAACGCTAACAAAATATTCACCGGGAGCAA‑TAATTCCTTTTTCCTTTAAAAATAAAAAATCaaacc                                                                                                                                                                  >  2:564503/1‑236 (MQ=255)
                                                                      gTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGTAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTc                                                                                                                                                              >  1:992065/1‑238 (MQ=255)
                                                                      gTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATAAAATATCAATGCGGTc                                                                                                                                                              >  1:684307/1‑238 (MQ=255)
                                                                       tccggAACTTAAATCAATACCCCGATCAATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCTCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTcg                                                                                                                                                             <  1:787067/235‑1 (MQ=255)
                                                                           gAACTGAAATTAATACCCCGATCTATTTGTGGCAAGGACTGACGGATTTCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCa                                                                                                                                                         <  2:1051897/238‑1 (MQ=255)
                                                                           gAACTGAAATCAATACCCCGATGTTTCTGGGGCAAGGAATGACGGATATCTGGTTTTAAACCAAATTTACCGACGAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCTCCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCa                                                                                                                                                         <  2:904599/238‑1 (MQ=255)
                                                                           gAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACaa                                                                                                                                                                                                                         <  1:1167525/175‑1 (MQ=255)
                                                                           gAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACaa                                                                                                                                                                                                                         >  2:1167525/1‑175 (MQ=255)
                                                                                   aTCAATGCCCCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGGCCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTAt                                                                                                                                                <  1:844340/239‑1 (MQ=255)
                                                                                   aTCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTAt                                                                                                                                                <  1:126080/239‑1 (MQ=255)
                                                                                   aTCAATACACCGATCTATCTATGGCAAGGACTGACGGCTATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTAA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACAGGGGGCAT‑TGATCCCTTTTTCCTTTAAAAATGAAATATCAAtcggcaccccccttaattttt                                                                                                                                                >  2:126080/1‑219 (MQ=255)
                                                                                           acCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATAATTGAGGTCGCGCATTGATTTATCGAGAACa                                                                                                                                        >  1:588312/1‑239 (MQ=255)
                                                                                             cGATTTTTCTGGGGCAAGGCTTTACGGATTTTTGGTTTTAAACCAAATTTATCGACCAGGGAATCATTGGTGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTCTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACAtt                                                                                                                                      <  2:815351/239‑1 (MQ=255)
                                                                                               atctatctGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCa                                                                                                                                    >  1:423519/1‑239 (MQ=255)
                                                                                                tctatctGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGCATCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCCTTGATTTATCGATAAAATTCAg                                                                                                                                   >  2:1012000/1‑239 (MQ=255)
                                                                                                 ttttttgtgGCTAGGACTGTCGGTTTTCTGGTTTTAAACCAAATTTATCGACCAGTGAATCAATGATGCAGTGAATGGTTTTGCCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGa                                                                                                                                  <  2:508376/234‑1 (MQ=255)
                                                                                                 ctatctGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGa                                                                                                                                  <  1:580172/239‑1 (MQ=255)
                                                                                                   atctGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAAAACATTCAGAtt                                                                                                                                >  1:1126360/1‑239 (MQ=255)
                                                                                                         ggCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTc                                                                                                                          >  1:969572/1‑239 (MQ=255)
                                                                                                         ggCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGAATCCTTTTTCCTTTAATAATGAAATATCAATTCGGTCGCGCATTGCTTTATCGAGAACATTCAGATTAAATTc                                                                                                                          >  2:1089765/1‑239 (MQ=255)
                                                                                                              ggACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGGGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGAcg                                                                                                                      >  1:128430/1‑237 (MQ=255)
                                                                                                              ggACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGCGAACATTCAGATTGAATTCGAcc                                                                                                                      >  1:747357/1‑238 (MQ=255)
                                                                                                                         tatCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAAATTAAATTCGACCCCCATTGCCCaa                                                                                                          >  2:654294/1‑239 (MQ=255)
                                                                                                                          atCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAg                                                                                                         >  1:542318/1‑239 (MQ=255)
                                                                                                                            cTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCCCCGCAACGCTAACAAAATATTCCCCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAAAATTCAGATTGAATTCGACCGCCATTGCGCAAGGc                                                                                                       <  1:971159/239‑1 (MQ=255)
                                                                                                                             tttttttAAACCTAATTTATCCACCAGTGAATTATTGTTGCATGGAATGGTTTTTGCA‑CCCTTTTTTTGACA‑TTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACCATAAAAAAATTTTCCCCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAAGCCGGCCCCGCATGGATTTAACGAGCACATTTATATTGAATTCGACCGCCATTGCGCAAGGCa                                                                                                      <  2:128430/236‑1 (MQ=255)
                                                                                                                              ggTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAACTATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTTTGGAGAACATTCAAATTGAATTCACCCGCCATTGCCCAAggaa                                                                                                      >  2:1001634/1‑236 (MQ=255)
                                                                                                                              ggTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACGGCCATTCCGCAAGGCa                                                                                                      >  1:551833/1‑238 (MQ=255)
                                                                                                                                 tttAAACCATTTTTTTCGACTATTGAATTTTTGTTGCATGGATTGTTTTTGTCC‑CCCTTTTTTTCCCA‑GTTAATTTTTTGCCCTTTACTGATTTTTTTGTTATTCACCCAAACGCTAACAAAATATTCACGGGGAGCAA‑TGACTCCTTTTCCCTTTAATAATGAAATACAAATGCGGTCGCGCTTTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGc                                                                                                  <  2:542318/239‑1 (MQ=255)
                                                                                                                                             ttttccaccggttaattttttaTGCATGGAATTGTTTTGTCC‑CCCTTTTTTGGCCA‑GTTAATTTTTTGCCCATTACTGTTTTTTTTTTTATTCACCCAAACGCTAAAAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAAAAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACcaggca                                                                                      <  2:684307/218‑1 (MQ=255)
                                                                                                                                             tttacgcccAGTGAATCATTGATGCAGGGAATGGTTTTGTCC‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATCCACCGCAACGCTAACAAAATTTTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACcaggca                                                                                      <  1:564503/232‑1 (MQ=255)
                                                                                                                                             ttATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCC‑CCTTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCCCCGCAACGCAAACAAAATATTCCCCGGGAGAAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACcaggca                                                                                      <  1:414358/239‑1 (MQ=255)
                                                                                                                                               ttccccctggaatataTTGGTGCGTGGAATGTTTTTGTCC‑CCGTTTTTTTGCCG‑TTTAATTTTTTGCACATTACGGATTTTGTTGTTATTCCCCGACACGCTAACAAAATATTCACCGGGGTCAA‑GGACTCCTTTTTCCTTAAATAATGAAATACAAATGGGTTCGCGCTGGGATTTATCGAGAACATCCATATAGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACcaggcagg                                                                                    <  2:597451/224‑1 (MQ=255)
                                                                                                                                               aTCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAatat                                                                                                                                                                        <  1:1217232/155‑1 (MQ=255)
                                                                                                                                                       gTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATCCaaaa                                                                            >  1:915751/1‑239 (MQ=255)
                                                                                                                                                                  ttgtttgttttttttttttCC‑CCTTTTTTTTGCTA‑TTTATTTTTTTCCCCATTTCTGTTTTTGTTGTTATTCACCGCAACGCAAAAAAAATTTTCCGCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACACTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATa                                                                 <  2:535012/226‑1 (MQ=255)
                                                                                                                                                                  ttgtttGGAGTGTTTTTTTCT‑CCTTTTTTTTCCCA‑ATTATTTTTTTGCCCTTTATGGATTTTGTTTTTATTCACCGCAATGCTAAAAAAATATTCCCGGGGATCAT‑TGACTCCTTTTTCCTTTAATAATGAAATAACAAGGCGGGCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATa                                                                 <  2:1102422/234‑1 (MQ=255)
                                                                                                                                                                  aTGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACaa                                                                                                                                                                                                                         <  1:599587/88‑1 (MQ=255)
                                                                                                                                                                       ttgttttgTTTTGTTA‑CCTTTTTTTTGCCA‑GTTAATTTTTTGCCCTTTTAGTTTTTTGTTGTTATTCACCGCAACGATAACAAAATATTCACGGGGAGCAA‑TGACTCTTTTTTCCTTTAATAATGAAATATCAATGCGGGCGCGCATTGATTTATCGAGAACATTCAGGTTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAatat                                                            <  2:551833/232‑1 (MQ=255)
                                                                                                                                                                          aaatgTTTTTTCACCCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTTCTGATTTTGTTGTTATTCACCCCAACGCTAAAAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTAAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTc                                                          <  1:654294/235‑1 (MQ=255)
                                                                                                                                                                            tttttttttcctctttttttttCCAA‑GTTTTTTTTTGTCCTATTCATGTTTTTGTTTTTTTTCACCGAAACTATAACAAAAGATTCCCGGGGAGCAA‑GGATTCCTTTTCCCTTAAAAAAGGAAATATCAATGCGGTCGCCATTTGTTTTAGCGAAAACAGTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCAc                                                        <  2:228699/224‑1 (MQ=255)
                                                                                                                                                                            ttgTTTTTCCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTTTTTTTATTCCCCGAAACGCTAACAAAATATTCCCCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTACCGAGAACATTCAGATTAAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  1:447383/237‑1 (MQ=255)
                                                                                                                                                                            tgtttttttCC‑CCTTTTTTTTTCCA‑GTTTTTTTTTTACCATTTCATTATTTTGTTTTATTTCAACAGAACATAAAAAAAATATTCCCCGGGACCAA‑GGACTCATTTTTCCTTAAAAAATGAAATACCAGGGCGGCCGGGCATTGATTTATCGAGAACATCCAGTTTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  2:588312/236‑1 (MQ=255)
                                                                                                                                                                            tGGTTTTTTCC‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCCCCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  1:176689/239‑1 (MQ=255)
                                                                                                                                                                            tGGTTTTTTCA‑CCCTTTTTTTGCCA‑GTTAATTTTGTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  1:1089765/239‑1 (MQ=255)
                                                                                                                                                                            tGGTTTTGTCC‑CCCTTTTTTTCCCG‑TTTAATTTTTTGCCCATTCCTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTAAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  1:1001634/239‑1 (MQ=255)
                                                                                                                                                                            tGGTTTTGTCC‑CCCTTTTTTGGCCA‑GTTAATTTTTGGCCCATTACGGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  1:21065/239‑1 (MQ=255)
                                                                                                                                                                            tGGTTTTGCCC‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCTTTACTGATTTGTTTGTTATTCCCCCAAACGATAACAAAATATTCGCCGGGAGCAA‑TGACTCCTTTTACCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  1:351529/239‑1 (MQ=255)
                                                                                                                                                                             tttttttttctctttttttttCCCA‑GTTTTTTTTTTCCCCTTTCCGTTTTTTTTTTTTATTCCCCCAAACCCTAAAAAAATTTTCAGCGGGGACAAGTGTC‑CCTTTTTCCTTTAAAAATAAAATACCAAGGCGGTCGCGTATTGTTTTATCGAGAACATCCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  2:126541/225‑1 (MQ=255)
                                                                                                                                                                             tgttttttccccccTTTTTTTGCCA‑TTTAATTTTTTGCCCATTACTTATTTTGTTGTTATTCACCCAAACGGTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       <  1:1204097/228‑1 (MQ=255)
                                                                                                                                                                              tgtttttgttccttttttttGCCACATTATTTTTTTGCCATTTGCTTATTTGTTTGTCATTCCCATCAACGATAACAAAATATCCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAAAAATGAAATATCAATGCGGTCGAGCATTAATTTCTCGAAAACAGTCAGATTGAATGCAACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATGCAAAAGAGAGTCGATAAATATTCACg                                                       <  2:37946/226‑1 (MQ=255)
                                                                                                                                                                                   tgctccccTTTTTTTCCCA‑TTTATTTTTTTGCCCATTACGTGTTTTTTTGTTTTTCCCCGCAACCCTAAAAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGGGGTCGCGCATTGATTTATCGAGAAAATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGATTCGATAAATATTCACGGTGTcc                                                 <  1:1199942/234‑1 (MQ=255)
                                                                                                                                                                                    tCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACACAATATTCACCGAGAGCAA‑TGACTCCTTTTTCATTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGCCTGCACTTGCGCAAGGCATAGCCATGACACGGTAGGATCCAAAAAAGAGTCGATAACAAATCACGGTGTCCAt                                               >  1:836311/1‑239 (MQ=255)
                                                                                                                                                                                    tCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGTCTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGTGCAAGGCATCTCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAAAAATCACGGTGTCCAt                                               >  2:215615/1‑239 (MQ=255)
                                                                                                                                                                                    tCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACGGTGTCCAt                                               >  1:126541/1‑239 (MQ=255)
                                                                                                                                                                                    tCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGCACGGATACAAAAGAGAGTCGATAAATATTAACGGGGTccca                                               >  1:483299/1‑237 (MQ=255)
                                                                                                                                                                                          cTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAAAGAGTCGCTAAAAATTAACGGGGTCCATAcccg                                          >  2:1210172/1‑237 (MQ=255)
                                                                                                                                                                                                          aaTTTTTTGCCCATATGTTATTTTGTTGTTATTCACCGCAACGCAAAAAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGTTCGCGCATTGATTTATCGAGAACATCCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACGGTGTCCATACCTGATAAATATTTTATGa                           <  1:47334/239‑1 (MQ=255)
                                                                                                                                                                                                           tttttttCCCCTTTTCTTTTTTTTTTTTTTTTCCCCCCAACGCAAAAAAAATATTCACCGGGACAAA‑TGACTCCTTTTTCCTTTAAAAAAGAAATATCAAGGCGGTCGCGCATTGATTTATCGAGAACATTAAGATTGAATCCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACGGTGTCCATACCTGATAAATATTTTATGaa                          <  2:423519/238‑1 (MQ=255)
                                                                                                                                                                                                                             atgttgttgTTCTTCACCGCAACGTTAAAAAATTATTCCCCGGGAGCAA‑TGACTCCTTTTTCCTTAAATAACGAAATATCAATGCGGACGCGCATTGATTTACCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACGGTGTCCATACCTGATAAATATTTTATGAAAGGCGGCGATGATgccgc        <  1:577988/236‑1 (MQ=255)
                                                                                                                                                                                                                             aTTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCCCGGGGTCCATACCTGTTAAATATTTTATGAAAGTCGGCGTTGATgccg         >  1:1094004/1‑238 (MQ=255)
                                                                                                                                                                                                                             aTTTTGTGTTTATTCACCGCAACGCTAAAAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAAGGAAATATCAATGGGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACGGTGTCCATACCTGATAAATATTTTATGAAAGGCGGCGATGATgccgc        <  1:579758/239‑1 (MQ=255)
                                                                                                                                                                                                                                  gttgttATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACg                                                       >  2:1178892/1‑187 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                  
GCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAACTGAAATCAATACACCGATCTATCTGTGGCAAGGACTGACGGATATCTGGTTTTAAACCAAATTTATCGACCAGTGAATCATTGATGCATGGAATGGTTTTGTCA‑CCCTTTTTTTGCCA‑GTTAATTTTTTGCCCATTACTGATTTTGTTGTTATTCACCGCAACGCTAACAAAATATTCACCGGGAGCAA‑TGACTCCTTTTTCCTTTAATAATGAAATATCAATGCGGTCGCGCATTGATTTATCGAGAACATTCAGATTGAATTCGACCGCCATTGCGCAAGGCATCGCCATGACCAGGCAGGATACAAAAGAGAGTCGATAAATATTCACGGTGTCCATACCTGATAAATATTTTATGAAAGGCGGCGATGATGCCGCCAAAAT  >  NC_000913/751760‑752223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A