Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,078,659 T→G 17.4% H75P (CAC→CCC)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,078,6590TG17.4% 243.5 / 5.4 110H75P (CAC→CCC) putAfused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (23/61);  new base G (22/4);  total (45/65)
Fisher's exact test for biased strand distribution p-value = 3.35e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

CCCTGGACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCATGGTGGTGGTTCCCATGCCATTACTCCTGTT  >  NC_000913/1078434‑1078897
                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                 
cccTGGACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGGTAGGCCGCGGTGATGCCGGCGCGGGAAACCGACTTGGGCACAATTTGCTCGGCAAAGCCTGGGAATGGCTGGGGGGGG‑TCCTCTg                                                                                                                                                                                                                                      >  1:118684/1‑238 (MQ=255)
cccTGGACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCCCTTCGGTTTCCGGGCGGCGATAGGCCGCGGGGATCGCGGCGCGGGGAACCGGCCGGGGCAAAATTTGCTCGGCAAACTTCGGGAAGGGCCGGGGGGGG‑TTCTCTGc                                                                                                                                                                                                                                     >  2:1133918/1‑239 (MQ=255)
 ccTGGACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTTCTCGGCAAAGTCGAGGAATGGCTGGGGTGGT‑TCTCCTGcc                                                                                                                                                                                                                                    >  1:56463/1‑239 (MQ=255)
  cTGGACCATCCCTGCGCGCCCACTGGCATTTTTTTGATTACGCAGTTTACCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCg                                                                                                                                                                                                                                   <  1:528111/239‑1 (MQ=255)
   tGGACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCCGCAGCCTAGAA‑ACCCCTTCGGTTTCCGGGCGGCGATAGGCCCCGGTGCTTGCGGCGCGGGAAACCGCCTGGGGCAAAATTTCTCCGGCGAAGTCGAGGAAGGGGTGGGGGGGTGTCCT‑TGCCgg                                                                                                                                                                                                                                  >  2:719061/1‑239 (MQ=255)
    ggACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTTTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGGTCGCGGCGCGGGAAACCGACCGGGGCAAAATTTGCTCGGCAAAGTCGAGGAATGGCCGGGGGGGT‑GTCTCTGACggg                                                                                                                                                                                                                                 >  2:529851/1‑238 (MQ=255)
    ggACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGTGGT‑TCCTCTGCCGGa                                                                                                                                                                                                                                 >  1:1131688/1‑239 (MQ=255)
          tACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGGTAGGCCGCGGGGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAAAGGCTGGGGGGGG‑TGCTCTGCCggggggggg                                                                                                                                                                                                                           >  2:725398/1‑232 (MQ=255)
          tACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGGGGAATGGCTGGGGTGGT‑TCCTCTGCCGGGGTCggg                                                                                                                                                                                                                           >  1:996990/1‑238 (MQ=255)
          tACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGGTTCCGGGCGGCGATAGGCCGCGGGGATCGGGGCCCGGGAAACCGACGGGGGGAATATTTGCTCGGCAAAACCGGGGGAAGGCTTGGGGGGG‑TCCTCCGCCGGAgggggg                                                                                                                                                                                                                           >  2:420677/1‑234 (MQ=255)
          tACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCCCTTTCGTTTCCGGGCGGCGATAGGCCCCGGTGATCGCGGACCGGGAAAACGACTGGGGCGATATTTGCTCGGCAAAGGCGCGGAAGGGCGGGGGTGGG‑Tcccccggcgggggtggg                                                                                                                                                                                                                           >  2:649505/1‑224 (MQ=255)
                cgcgACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGCA‑ACCCCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGCGGAATGGCTGGTGTGGT‑TCCTCTTCCGGGGTCGGGGCTTc                                                                                                                                                                                                                      >  1:357927/1‑238 (MQ=255)
                cgcgACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGGAACCGCCTGGGGGCATATTTGCTCGGCAAAGGCCGGGAAGGGGGGGGGGGGT‑TCCTCTGCCGGGGACggggggt                                                                                                                                                                                                                       >  2:443323/1‑232 (MQ=255)
                cgcgACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCCAAGTCGAGGAATGGCTGGGGTGGT‑TCCCTTGCCGGAGTCGGGGCTTc                                                                                                                                                                                                                      >  1:1270676/1‑238 (MQ=255)
                cgcgACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTTCCGGAGTCGGTGCttaa                                                                                                                                                                                                                     >  1:1089387/1‑237 (MQ=255)
                cgcgACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGGGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGTGGT‑TCTCCTGCCGGCGTCGGTGCTTCa                                                                                                                                                                                                                     >  1:209848/1‑239 (MQ=255)
                cgcgACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGGGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGTGGG‑TCCTCTGCCGGAGTCGGTGCttaa                                                                                                                                                                                                                     >  1:1363754/1‑237 (MQ=255)
                 gcgACCACTGGAATTTTTTTGGTTACGCAGTTTGTCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGGTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGGTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCAt                                                                                                                                                                                                                    <  2:831842/239‑1 (MQ=255)
                   gcccctgtgCATTTTTTTTATTCCGCCGTTTATCGCCCAGCGGAGACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCg                                                                                                                                                                                                                  <  2:118684/231‑1 (MQ=255)
                   gACCCCTGGCA‑TTTTTTGATTACGCAGTTTAGCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCg                                                                                                                                                                                                                  <  1:723063/238‑1 (MQ=255)
                                ttttgGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCcg                                                                                                                                                                                                     <  1:1038961/239‑1 (MQ=255)
                                          gccgtttttggggCGAGGTGATGCGGCAGTTGGGGCGCCTGTTGAGCAACGGGTTTGGGCGGGGGGGCTTGTTCGAGGGGCATAGAA‑CCCGGTTCGGTTTCCGGGGGGGGATAGGCCGCGGTGATCGCGGCGGGGGAAACCGACTGGGGCAATATTTGCGCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑GCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAag                                                                                                                                                                                           <  2:357927/228‑1 (MQ=255)
                                          cGCATTTTTTCGGGCCGCTGATGCGCCATTTTGTGCGCCTGTTCAGCAACGGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGGCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAag                                                                                                                                                                                           <  2:556767/239‑1 (MQ=255)
                                                    tggCCCGCTGATACGTCGGTTTGTGGCCCTGTTCAGCACTTGGCGGCGGGAGGCGGGCTTGTTCCAGCAGCATAGAA‑GCCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGGGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGT‑GCAGGt                                                                                                                                                                                <  2:209848/238‑1 (MQ=255)
                                                       ccggCTGATACGCCAGTTTGTGCGCCTGGTCAGCAACTGGCTGCGGCATGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAg                                                                                                                                                                              <  1:354965/235‑1 (MQ=255)
                                                         ggttggtACGCCGTTTTGGGCGCCTGTTCAGCAGCTGGGTGCGGCGGGCGGGCTTGGTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTc                                                                                                                                                                           <  2:197974/233‑1 (MQ=255)
                                                         aGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTTCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TTCTCTTCCGGGGGCGGTGATTTCTCGCCCTCTCTGGCCCGGCCCGaaaaaagggcggggtgcac                                                                                                                                                                            >  2:1313229/1‑223 (MQ=255)
                                                         aGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGGGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTTGCCGCGCCAGAAAGCAGC‑CCAGGTAGCt                                                                                                                                                                            >  1:1257921/1‑238 (MQ=255)
                                                           cTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGAGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGGGGAAAGGCTGGGGTGGT‑TTCTCTGCCGGGATCGGGGCTTCATCCCTCTCATTGGCCGCGCCCGAAAACAGC‑GCgggggaccccg                                                                                                                                                                         >  2:735408/1‑231 (MQ=255)
                                                            gtattcgccgttttggtcgcCTGTTCACAAAGTGGCGGCGGGAGGCGGGCTTGGTCCAGCAGCCTAGAA‑ACCGCTGCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCgg                                                                                                                                                                        <  2:928415/222‑1 (MQ=255)
                                                              ttACCCCCGTTTGTGCCCCTGTTCAGCACCTGGCTGGCGCAGGCGGGGTTGTTCCAGCAGCATAGAA‑CCCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCa                                                                                                                                                                      <  2:1033555/238‑1 (MQ=255)
                                                                    cggTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTAt                                                                                                                                                                <  1:1007654/237‑1 (MQ=255)
                                                                    cAGTTTGGTCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTAt                                                                                                                                                                <  1:1143534/239‑1 (MQ=255)
                                                                     aGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCCCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGAGGT‑TCCTCTGCCGGGGTCGGGGCTTCATCGCTCCCATTGGCCGCGCCCCAAAGAAGC‑GCGGGGAACCCCGGcgagggatg                                                                                                                                                               >  2:815324/1‑231 (MQ=255)
                                                                      gTTTGGGCGCCTTTTCGCGAACTGGTGGCGGCAGGGGGGGTTTGTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGGGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCg                                                                                                                                                              <  2:767130/239‑1 (MQ=255)
                                                                       tttGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGTGGT‑TCCTCTTCCGGAGTCGGTGCTTCATCGCTCCCCTTGGCCCCGCCAGAAAGCAGC‑GCAGGTAGGTCCGGCAAAGGATCg                                                                                                                                                              >  1:928415/1‑238 (MQ=255)
                                                                            gcgcCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCTCGGGGATCGCGGCGCGGGAAACCGCCTGGGGCAATATTTGCTCGGCAAAGTCGAGGATTGGCTGGGGGGGT‑TCCGCTGCCGGGGTCGGTGCTTCTTCGCCCTCCTTTGCCGGGCCAGAAAGCAGC‑GCCGGGAGCTCCGGCCAAGTATCGCCGttt                                                                                                                                                        >  2:343001/1‑239 (MQ=255)
                                                                             cgcCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGGAACCGACTGGGGCAATATTTGCTCGGCCAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTTGCGGGGTCGGGGCTTCATCGCCCTCATTGGCCGCGCCCGAAAGCAGC‑GCAGGGAGCTCCGGCCGAATATCGCCGttt                                                                                                                                                        >  2:244993/1‑238 (MQ=255)
                                                                                   ttCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGCGGAAGGGCTGGGGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCCGTCTCCTTGGCCCCGCCCGAAA‑CAGCAGCCGGTAGGCCCGGCAGAGAAATCCTGGTTTCCAgat                                                                                                                                                 >  2:561770/1‑237 (MQ=255)
                                                                                             ggCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATa                                                                                                                                       >  1:846087/1‑239 (MQ=255)
                                                                                                  cGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCCGGAAGCAGC‑GCACGCAGCTCCGGCAGAGGATCGCTGTTTTCCCATTGTTCGGGGTTAGaaa                                                                                                                                  >  1:1191516/1‑239 (MQ=255)
                                                                                                            gCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCg                                                                                                                                                                                                                  <  1:1055856/150‑1 (MQ=255)
                                                                                                             tttggctcagcagCATAGAA‑ACCGGTTCGGGTTCCGGGCGGCGGTAGGCCGGGGTGATCGCGGCGGGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTg                                                                                                                        <  2:468779/231‑1 (MQ=255)
                                                                                                             gtttttCCAGCAGCATGGAA‑ACCGCGTTGGTTCCGGGGGGGCGAGAGGCCGCGGTGATGCCGGCGCGGGAAACCGAAGTGGGCAATTTTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTg                                                                                                                        <  2:886846/234‑1 (MQ=255)
                                                                                                             caggTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTg                                                                                                                        <  1:1053985/235‑1 (MQ=255)
                                                                                                             cTTGTTCCAGCAGCATAGAA‑CCCGCTTCGGTTTCCGGGCGGCGATAGGCCGGGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTg                                                                                                                        <  1:1019809/238‑1 (MQ=255)
                                                                                                             cTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑CCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCt                                                                                                                         >  1:283489/1‑237 (MQ=255)
                                                                                                                 ttcaggcgtgaTAGAG‑ACCGCGTCGGTTGCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGGCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCttaa                                                                                                                   <  1:391828/229‑1 (MQ=255)
                                                                                                                   ccAGCGGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCttaatt                                                                                                                 <  1:1030027/239‑1 (MQ=255)
                                                                                                                   ccAGCGGCATAGAA‑ACCCGTTGGGTTTCCGGGCGGCAGTAGGCGGTGGGGATCGCGGCGGGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCGCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCttaatt                                                                                                                 <  2:451348/239‑1 (MQ=255)
                                                                                                                   ccAGCAGCATAGAACGCCGC‑TCGGTTTCCGGGCGGCGATTGGCCGCGGTTACCGGGGGGCGGGAAACCGACTGGGGCAATATTTGCGCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCttaatt                                                                                                                 <  2:1078757/239‑1 (MQ=255)
                                                                                                                      gcagcaTAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGGGTGGT‑TCCTCTGCCGGGGTCGGGGCTTCATCGCTCTCATTgg                                                                                                                                                                                                        >  2:1055856/1‑150 (MQ=255)
                                                                                                                        agcaTAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCttaattaa                                                                                                               <  1:1133918/236‑1 (MQ=255)
                                                                                                                          caTAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTg                                                                                                                        <  2:372699/225‑1 (MQ=255)
                                                                                                                           aatgAA‑CCCGGTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGTTCGCGGCGCGGTAAACCGACTGGGGCAATATTTGCTCGGCAAGGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCa                                                                                                            <  2:368878/233‑1 (MQ=255)
                                                                                                                           aTAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAgt‑g                                                                                                        <  1:529851/239‑1 (MQ=255)
                                                                                                                           aTAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAg                                                                                                           <  1:443323/237‑1 (MQ=255)
                                                                                                                           aTAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGGTGCTCCGTCAGCGGATCGCTGTTTTCCAGTTGTTCGAGATAAAAAAAAAACGCCCGCttaattaaa                                                                                                              >  2:1053985/1‑233 (MQ=255)
                                                                                                                            gaGAA‑ACCGCGTCGGTTTCGGGGCGGCCGGAGCGGGCGGTGTACGCGGTGAGGGAAACTGGTTGGGGCAATATTTGTCCGGCAAAGTCGAGGAAGGGCGGGGGGGGT‑TCCTCTGCCGGAGTCGGTGCTTCATGGCTCTCATTGGCCGCGCCAGAAAGCAGG‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAgt‑g                                                                                                        <  2:95855/237‑1 (MQ=255)
                                                                                                                             aGAA‑CCCGCTTCGGTTTCCGGGGGGGGATTGGCCGCGGTGATGGCGGGGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAgt‑gtg                                                                                                      <  2:662394/239‑1 (MQ=255)
                                                                                                                                   ccGCTTCGGTTTCCGGGCTGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAgt‑gtggtgtg                                                                                                 <  1:735408/239‑1 (MQ=255)
                                                                                                                                   ccGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAgt‑gtggtgtg                                                                                                 <  1:725398/239‑1 (MQ=255)
                                                                                                                                     gCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGcg                                                                                               >  1:486889/1‑239 (MQ=255)
                                                                                                                                     gCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGGGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGGGATAGGAAAAAATCGCCTGCTTAATTAACCAgt‑gtggtgtggg                                                                                               >  1:579880/1‑237 (MQ=255)
                                                                                                                                       ttCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACACGT‑GTGGTTTGcga                                                                                              >  1:449784/1‑238 (MQ=255)
                                                                                                                                        tCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTTGCCGCGCCAGCAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGCGGTAAGAAAAAATCGCCTGCTTAATTAACCAGTCGTGGT‑TGcgatc                                                                                            >  1:1322228/1‑239 (MQ=255)
                                                                                                                                                       ggATGGGCCGGGGGGATCGGGGGGGGGGAAACCGACTGGGGCAATTTTTGATCGGCAAAGTCGAGGAAGGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCgg                                                                              <  2:1089387/237‑1 (MQ=255)
                                                                                                                                                       cgATTGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCgg                                                                              <  1:1026816/238‑1 (MQ=255)
                                                                                                                                                       cgATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCgg                                                                              <  1:78056/238‑1 (MQ=255)
                                                                                                                                                        gATTGGCCGCGGTGATCGCGGCGGGGGAAACCGACTGGGGCAATTTTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGc                                                                             <  1:649505/238‑1 (MQ=255)
                                                                                                                                                        caTAGGCCGGGGTGAGCGGGGGGGGGGAAACCGACTGGGTCAATTTTTGCTCGGCAAAGTCGAGGAATGGCGGGGGTGGT‑TCCCCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTGCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGc                                                                             <  2:142827/237‑1 (MQ=255)
                                                                                                                                                         aTAGGCCGCGGTGATCGCGGCGCGGGAAACCGGCTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCa                                                                            <  1:1234766/238‑1 (MQ=255)
                                                                                                                                                               ccgggtggtCGGGGCGCGGGAAACCGACTGGGGCAATATTTGCTGGGAAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTaa                                                                     <  2:486889/236‑1 (MQ=255)
                                                                                                                                                                 cgGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCACTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GGGGTGTGCGATGGAAACGGGTCGCGGCAGACTaaaaa                                                                   >  2:914921/1‑237 (MQ=255)
                                                                                                                                                                 cgGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTACCGGAGGCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCCGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGCTAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGAGACGTGTCGCGGCCGACTTCAt                                                                    >  1:142827/1‑238 (MQ=255)
                                                                                                                                                                  ggTGATCGCGTCGGGGGAACCCGGCGTGGCGAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATa                                                                   <  1:61226/238‑1 (MQ=255)
                                                                                                                                                                               cggGAACCCGCCTGGGGCAATTTTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCAcgcgtcg                                                      <  1:525650/238‑1 (MQ=255)
                                                                                                                                                                                 ggAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCAGTCTTATTTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCCGACTTAATACGCTCAcgcgtcgcg                                                    >  1:175202/1‑238 (MQ=255)
                                                                                                                                                                                 ggAAACCGACTGGGGCAATATTTGCTCGGCAAAGGCGAGGAATGGCTGGTGGGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCAcgcgtcgcg                                                    <  1:719061/238‑1 (MQ=255)
                                                                                                                                                                                           tGGGGCAATTTTTGGTCGGCAAAGTCGAGGAATGGCGGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCtt                                         <  2:1257921/239‑1 (MQ=255)
                                                                                                                                                                                           tGGGGCAATTTTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCtt                                         <  1:1313229/239‑1 (MQ=255)
                                                                                                                                                                                            ggggCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCTGCGCGTCGGCCAGCTTa                                        >  1:1179782/1‑239 (MQ=255)
                                                                                                                                                                                            ggggCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCCGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCtt                                         <  1:233566/238‑1 (MQ=255)
                                                                                                                                                                                              ggCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGAGAAGCAAAAATCGCCTGCTTACTTAACCAGG‑GTGGGTTGGGATCGATACGGGTCGGGGCAGCCTTTATAAGCCCACGCGTCGCGTGCTCCCGGTTaa                                       >  2:46873/1‑238 (MQ=255)
                                                                                                                                                                                               gcattttttGCTCGGCAAAGTCGGGGAATGGGTGGTGGGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAAc                                      <  2:1131688/232‑1 (MQ=255)
                                                                                                                                                                                               gCAATATTTGCTCGGCAAAGGGGAGGAATGGCGGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAAc                                      <  2:846087/238‑1 (MQ=255)
                                                                                                                                                                                                  atatTTGCTCGGCAAAGTCGAGGAATGGGTGGTGTGGT‑TCCTCTGCCGGGGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAAccccc                                  <  2:1270676/239‑1 (MQ=255)
                                                                                                                                                                                                   tttttGCCGGGGAAATTCGGGGGATGGTTGGTGGGGT‑TCCTCTGCCGGGGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GGAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCa                                 <  2:1191516/237‑1 (MQ=255)
                                                                                                                                                                                                        gCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATAAGCTCACGCGTCGCGTCGTCAAGCTTAACCCCCAtgggg                            >  2:95334/1‑237 (MQ=255)
                                                                                                                                                                                                                aactCGGGGAATGGGTTGTGTGGT‑TCCTTTGCCGGGGTCGGTGCTTCCGCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCATGGTGGTGGTTcc                    <  2:579880/236‑1 (MQ=255)
                                                                                                                                                                                                                   tCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCgg                                                                              <  1:121650/178‑1 (MQ=255)
                                                                                                                                                                                                                         aaTGGCTGGTTGGGT‑TCCTGTGGCGGGGTCGGTGCTTCATCGTTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCATGGTGGTGGTTCCCATGCCAt            <  1:343001/238‑1 (MQ=255)
                                                                                                                                                                                                                            ggCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGGGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCACCTTAACCCCCCTGGTGGAGGTTCCCATGCCATTAc         >  1:867226/1‑238 (MQ=255)
                                                                                                                                                                                                                             gCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCtt                                         >  1:1157488/1‑205 (MQ=255)
                                                                                                                                                                                                                             gCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCtt                                         <  2:1157488/205‑1 (MQ=255)
                                                                                                                                                                                                                             gCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGGGTGGGATCGTTACGGTTCGCGGCAGCCTTaaa                                                                    >  2:121650/1‑177 (MQ=255)
                                                                                                                                                                                                                                tgtgtTGT‑TCCCCTGCCGGAGGCGGTTCTTCAGCGCTATCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTAGCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGGGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCATGGTGGTGGTTCCCATGCCATTACTCCtg    <  2:89903/238‑1 (MQ=255)
                                                                                                                                                                                                                                ggTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCATGGTGGTGGTTCCCATGCCATTACTCCtg    <  1:244993/239‑1 (MQ=255)
                                                                                                                                                                                                                                 gtggGGT‑TCCTGTGGCGGGGTCGGTGCTGCAGCGCTCTCATTGCCCGCGCCAGAAGGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTGCGAGATAAGAAAAAAGCGCCTGCTTAATTAACCAGT‑TTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCATGGTGGTGGTTCCCATGCCATTACTCCtg    <  2:389069/238‑1 (MQ=255)
                                                                                                                                                                                                                                  tgtgGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACAAGT‑GTGGGGGGGGATCGATACGGGTCGCGGCAGACTTAATACGCACACGGGTCGCGCCGGCCACCTTAACCCCCATGGGGGTGGTTCCCCATCCATTACCCCttgt  >  2:140762/1‑236 (MQ=255)
                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                 
CCCTGGACCATACCTGCGCGACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTTGTGCGCCTGTTCAGCAACTGGCTGCGGCAGGCGGGCTTGTTCCAGCAGCATAGAA‑ACCGCTTCGGTTTCCGGGCGGCGATAGGCCGCGGTGATCGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAATGGCTGGTGTGGT‑TCCTCTGCCGGAGTCGGTGCTTCATCGCTCTCATTGGCCGCGCCAGAAAGCAGC‑GCAGGTAGCTCCGGCAGAGTATCGCTGTTTTCCAGTTGTTCGAGATAAGAAAAAATCGCCTGCTTAATTAACCAGT‑GTGGTGTGCGATCGATACGTGTCGCGGCAGACTTAATACGCTCACGCGTCGCGTCGTCCAGCTTAACCCCCATGGTGGTGGTTCCCATGCCATTACTCCTGTT  >  NC_000913/1078434‑1078897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A