Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
728,493 |
C→A |
17.7% |
M80I (ATG→ATT) |
kdpA ← |
potassium translocating ATPase, subunit A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 728,493 | 0 | C | A | 17.7%
| 113.6
/ 2.1
| 57 | M80I (ATG→ATT) | kdpA | potassium translocating ATPase, subunit A |
| Reads supporting (aligned to +/- strand): ref base C (27/19); new base A (2/9); total (29/28) |
| Fisher's exact test for biased strand distribution p-value = 2.06e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGGGTAAACGCACGGATGAGGGCAAAAATCACCGCAATCCCGCTGGCGGCAGAAAGAAAGTTTTGCACCGTTAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAGTAAAAACGTGGCGATCAGTAAGAACCCTTGCGC > NC_000913/728262‑728726
|
gCGGGTAAACGCACGGATGAGGGCAAAAATCACCGCAATCCCGCTGGCGGCAGAAAGAAAGTTTTGCACCGTTAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCCTTCAGATTGCCCGTTGGTATTTGTGACAAAGCTGACGGCGGGATTTC‑GCCCCCGATCCCCCAGAAGCCCGTGCAAATGCCTGGGGTTAAGCGGGCGA‑AAGGGC‑CTGCCGAGC‑CACCTaaaaa > 1:636039/1‑239 (MQ=255)
aaCGGAGGAGGGCAAAAACCACCGCAACCCCGCTGGCGGAAGAAAGAAAGTTTGGCACCGTAAAGCCCGCCATCTGGCTGAAATAGCTAAACGTGGTTTCACCGCTAAAAGATGGCCAGTTGGTATTGGTGAAAAAGCTGACGGCGGTATCCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTCC‑TGACCGAGC‑AACAAAAAAAACAGCACCGcc < 2:730544/238‑1 (MQ=255)
aCGGATGAGGGCAAAAATCACCGCAATCCCGCTGGCGGCAGAAAGAAAGTTTTGCACCGTTAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAACCTGCCGGCGGTATTAA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑AATTGC‑TGACCGAGC‑AAAACAAAAAAAAGAACcccc > 1:261692/1‑238 (MQ=255)
gaacatgctggggCTGGCGGCAGAAAGAAAGTTTTGCACCGTTAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑ACGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCCTGTTCCgg > 2:616770/13‑238 (MQ=255)
tCCCGCTGGCGGCAGAAAGAAAGTTTTGCACCGTTAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGGATTCA‑GCGCCCGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAATGC‑TGACCGAGC‑AAAAGAAAAAAAAGCACCGCCGGACCCAGAATGTTCAAACCGAGaaag > 1:415487/1‑237 (MQ=255)
tGCACCGTTAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGGGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGAAATTGCTTCCAGTTCa > 1:168648/1‑238 (MQ=255)
ccggTTAAGCCCGCCATTGGGCTGAAATAGCTCAACGTGTTTTCCCCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCGGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCAtct < 2:86086/235‑1 (MQ=255)
ccGTTAAGCCCGCCTTCTGGGTGAAATGGCTAAACGTGGTTTCCCCGATAGAAAATTGCCAGTTGGTTTTGGGCACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGAAAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCa < 2:415487/239‑1 (MQ=255)
ttAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCCCGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGGGC‑CACATAAAAAACAGCACCCCCAGCCCCAGCAAGTTCAGGCCGAGAATGGCAAAAAAATATTACTTCCAGTACATCTCACgg > 1:386465/1‑239 (MQ=255)
ttAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCCCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCCCAAAGATATTGCTTCCAGTTCATCTCACg > 2:97002/1‑238 (MQ=255)
aaagataaaggtttgtgttaaaTTGCTCGACGGGTTTTCCCCGCTATAAGTGTGCCGGTTGGTATTGGGGACAAAGCTGACGGCGGTATTCA‑GCGCCTGTTCCCACGACCGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑GCACCGACC‑AACATAAAAAACAGCCCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGt < 1:59298/220‑1 (MQ=255)
accccGCCTTTGGGCTAAAATAGCGCAACGGGGTTTACCCGCTAAAAGATTGCCAGTTGGTATGGGTGACAAAGCTGACGGCGGTATTCA‑GCCCCAGACCCCACGACAGCCCTGGCAACTGCTGGGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCa < 2:259492/237‑1 (MQ=255)
gCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGGGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGCGAATGGCACAAAAATATTGCATCCAGTTCATCTCACGGTCA‑GAGAc > 2:761297/1‑239 (MQ=255)
taattaccacaatggtttttCCCCGTTAAAAGGTTCCCGGTTGGTTTTGGGAAAAAAGGTGGCGGGGGTTTTCA‑GCCCCGACCCCCCCGACAGCCCTGGAACCTGCTGTGGATTAAGCGGCAGA‑TAGGGC‑TGACCGAGC‑AAAATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTgcgc < 1:84612/222‑1 (MQ=255)
aTAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCCCAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCactgtatctta > 2:59298/1‑229 (MQ=255)
cTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCCCGGTCA‑GAGACCCCAAAAGCGCGaaaaaa > 1:839976/1‑238 (MQ=255)
cTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAATGC‑TGACCGAGC‑AACATAAAAAACAGCACCCCCAACCCCAACCTGTTCAGGCCGAGACGGGCCAAAAGAAATTTGTTCCCATTCATCTCCCCGCCAGGAGA‑GCCAAATGGGCGgaaaaa > 1:691327/1‑238 (MQ=255)
cGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCCGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGAAATTGCTTCCCGTTCATCCCCCGGGCA‑GAAACGCCAAGGGCGCGaaaaaaaaagg > 1:463615/1‑233 (MQ=255)
tccccGCTAAAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAAc < 2:580180/236‑1 (MQ=255)
gCTATAAGATTGCCATTGGGTATTGGTGACAAAGCTACCGGCGGTATCCA‑GCGCCAGACCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACAAAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCg < 2:385010/239‑1 (MQ=255)
aaGATTGCCGGTGGGTGTGGGTGACAAAGCTGACGGCGGTATTGA‑GCGCCAGACCCCACGAAAGCCCTGGCAACTGCTGTGAATTACGGGGCAGA‑TAGTGC‑TGACGGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTa < 2:706903/239‑1 (MQ=255)
aaGATTGCCAGTTGGTTTGGGGGACAAAGCTGACGGGGGTATCCA‑GCGCAAGATCCCACGAAAGCCCTGGAAACTGCTGTGGATTAAGCGGCAGA‑TAGGGC‑TGCCCGAGC‑AAAATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTa < 2:636039/239‑1 (MQ=255)
gCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGAAATTGCTTCCATTTCATTTCCCGGTCA‑GAACCGCCAAGGGGCCGAAAAAAAAACCGCC‑AAAACCCCGTTGTAACgggg > 1:304035/1‑238 (MQ=255)
ccAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGCGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCCTGGTCAGGCCGAGAATGGCACAAAGATATTGCTTCCCGTTCATCTCCCGGTCA‑GAGAAGGCACGTTCGGGACAAAAAACGCGCC‑CAAAGCCCCGTGGACCggggg > 1:832686/1‑237 (MQ=255)
ccAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGaa > 2:175672/1‑239 (MQ=255)
ttGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGAGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGGGAATGGCACAAAGATATTGCTTCCCGTTCATCTCACGGTAA‑GAGACGCCAAGTGCGCGAAAAAGAACGCGCT‑CAAAGCCCGTTTTCCCGGCACGAgg > 2:884501/1‑239 (MQ=255)
tGGTTTGGGTGACAAAGCTG‑CGGGGGTTTTCACGCACAAGACCCCCCGACAGCCCGGGAAACTGCTGGGCATAAAGGGGAAGA‑TTGTGC‑TGACCGAGC‑ACAAAAAAAAACAGCTCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGa < 1:712333/239‑1 (MQ=255)
tGGTAGTGGATACAATGCTGACGTGGTTATCCA‑GCCCCAGACTCACCAACAGCCTTGCTAAACGCAGGACATTAGACGGCATG‑TGGTGC‑TGACCGAGC‑AACATAAAAACCAGCCCCGCCAGCCCAAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGa < 1:775866/239‑1 (MQ=255)
gtttttGGTGACAAAGCTGACGGCGGTATTCG‑GCGCCAGATCCCACGACAGCCCTGGCAACGGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGaa < 2:373185/235‑1 (MQ=255)
gggtttGGTGACAAGGGTGGCGGCGGTATTCA‑GCGCCAGACCCCACGAAAGCCCTGGAACCTGCGGTGGATTAAGGGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGaa < 2:386465/235‑1 (MQ=255)
ggctttgtggaaaaaGGTGAGGGGGGTACTCA‑GGCCCAAATCCCACGACAGCCCTGGCAACTTCTGGGGATTAGGCGGCAGA‑TAGGGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGaa < 2:691327/227‑1 (MQ=255)
ggTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACAACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGACC‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCAt > 2:71466/1‑239 (MQ=255)
aaaGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCCCGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATc > 2:466549/1‑238 (MQ=255)
aagggggggggggTATCCA‑GGGCCACACCCCAAG‑CAAGCCTGGGAAATGCTTGGGGATAAGCGGGAGATTAGTGC‑TGCCGGACC‑AAAAAAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAg < 1:491889/228‑1 (MQ=255)
cggcggTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAACCAGCACCGCCAGCCCCAGCATGTTCAGGACGAGAATGGAAACAAAAAATTGCGTCCAGTTCATCTCACGGTCC‑GAGACGCCAAACGCGGGACACAGTACG‑GCTCCAAACCCCGTTGGACAGGGACGAGTAAAGTAATAAAACAGccacacc > 1:732470/1‑234 (MQ=255)
ggcggTATTCA‑ACGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAAAAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGAAATTGCTTCCAGTTCATCTCACCGTCA‑GAGACGCAAAGTGCGCGAAAAAGTACGCTCT‑CAACGCCCGGTGTACCGGGAAGAGGGAGGTCATAAAACAGCAGCGCCa > 1:718150/1‑239 (MQ=255)
tttCC‑GCGCCGGACCCCAGGACGGCCCTGGAACCGGCGGTGGATACAGGGGCAGG‑TAGGTC‑TGCCCGAGC‑AAAATAAAACACAGCCCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCg < 1:616770/237‑1 (MQ=255)
tttCC‑GCCCCAGTCCCCAGGAGAGCCCGGACAACTGGGGTGGGTTAAGGGGCAAA‑AAGGCG‑TGACCGAGC‑AACAAAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCAGCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGc < 1:537841/238‑1 (MQ=255)
aTTCA‑GCGCCAGATCCCCCGCCAGCCTGGGCAACTGCTGGGGATTAGGCGGCAGA‑TGGGGC‑TGACCGATC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGc < 2:774721/239‑1 (MQ=255)
aTTCA‑GCGCAAGATCCCACGACAGCCCTGGCAACTGTTGTGGATTAAGCGGAAGA‑TAGTGC‑TGACCGAGC‑AAAAAAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGc < 2:304035/239‑1 (MQ=255)
ccccaggaaggcccggcaaaCTGCGGTGGATTAAGCGGAAGA‑TAGTGC‑TGACCGAGA‑AAAAAAAAAACCAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGa < 2:261692/219‑1 (MQ=255)
aagccccTGGCAACCGGTGTGGATTAAGGCGCAGA‑TGGTGC‑TGACCGGAA‑AAAAAAAAAAACAGCCCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGc < 2:727346/235‑1 (MQ=255)
cAGCCCTGGCAACGGTGGTGATTTAACGGGCAGA‑TAGTGC‑TGCCCGACC‑AACATAAAAAAAAGCCCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCa < 2:896661/239‑1 (MQ=255)
acgCCCGGGAAAGTGGTGGGGGTTAAGCCGCAGA‑‑AGGGCGGGACGGAGCAAACACAAAAAAGGGC‑CCGGCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCa < 2:271089/237‑1 (MQ=255)
cccTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAACGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTTCCTACAGGACGCGCCAGCCCCa > 2:524301/1‑239 (MQ=255)
ccgggCAATTGATGGGGATTAAGCGGCAGA‑TGGTTC‑CGACCGAGC‑AACAAAAAAAACCGCCCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGc < 2:683640/231‑1 (MQ=255)
ttctgTGTATTAAGGGACAGT‑TGGTGT‑TGCCCGAAA‑ACAATAAAAAACAGACCCGCCAGCCCCCGCATGCTCCGGTCGAGAATGGCACAAAGATATTGCTTCCAGCTCATCGCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CCACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAg < 1:113844/237‑1 (MQ=255)
aGCGGCAGA‑TAGTGC‑TGACCGAGC‑CACATAAAAAACCGCACCGCCAGCCCCAGCCTGTTCAGGCCGAGAATGGCACAACGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCCCGAAAAAGTACTCGCT‑CCACGCCCGTTGTACCGGTCAGAGGAATGTCATTTATCAGCCGCCCCCGCCCGCGTCCTACAAGACCCGCCCGACCCAATAACACCACTTAAAACATgtc > 1:796194/1‑237 (MQ=255)
cAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAGTAAAAACGTGGCGCTCa > 2:91171/1‑239 (MQ=255)
gcagagaggtcggACCAAGC‑AACATAAAAAACAGCCCCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAGTAAAAACGTGGCGAt < 2:832686/226‑1 (MQ=255)
tgtagccctctccGAGC‑ACCACAAAAACCAGCCCCGCCAGCCCCAGCTTGTTCAGGCCGGGAAGGGCACAAAGATATTGCTTCCAGTCCATCTCACTGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAGTAAAAACGTGGCGATCAGt < 1:761297/228‑1 (MQ=255)
aGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGAAGCGCCAGCCCCATTAAAACACGAAAAAACGGGGGGaccggaaaa > 1:498892/1‑231 (MQ=255)
tGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCCTTAACACCAGTAAAAACAAGGCGACCaaaaaaaac > 1:749921/1‑229 (MQ=255)
aCCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTTAAGGACGCGCCAGCCCCATTAACACCAGGAAAAACGGGGCGACCAGAAAGAACCCtt > 1:562664/1‑239 (MQ=255)
gC‑AACATAAAAAACAGCACCGCCAGCCCCAGTATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAGTAAAAACGTGGCGATCAGTAAGAACCCTTtcgc > 2:678070/1‑238 (MQ=255)
gC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAGTAAAAACGTGGCGATCAGTAAGAACCCTTgcgc > 2:310415/1‑238 (MQ=255)
gC‑AACATAAAAAAAAGCACCGCCAACCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATAATGCTTCCAGTTCATCTCACGGTCA‑GAGACCCCAAGTGCGCGAAAAAGTACGCGGT‑AAACGCCACCTGTACCGGACAGAGGACTGTCATTAATCAGCCGCGGACACCCACTGCCCAAGGGTCGCGCCCGCCACATTACCACCATTAAAAAAAGCGAGAACAGAAAGAACCCtgtcgc > 1:133228/1‑233 (MQ=255)
|
GCGGGTAAACGCACGGATGAGGGCAAAAATCACCGCAATCCCGCTGGCGGCAGAAAGAAAGTTTTGCACCGTTAAGCCCGCCATCTGGCTGAAATAGCTCAACGTGGTTTCACCGCTATAAGATTGCCAGTTGGTATTGGTGACAAAGCTGACGGCGGTATTCA‑GCGCCAGATCCCACGACAGCCCTGGCAACTGCTGTGGATTAAGCGGCAGA‑TAGTGC‑TGACCGAGC‑AACATAAAAAACAGCACCGCCAGCCCCAGCATGTTCAGGCCGAGAATGGCACAAAGATATTGCTTCCAGTTCATCTCACGGTCA‑GAGACGCCAAGTGCGCGAAAAAGTACGCGCT‑CAACGCCCGTTGTACCGGGAAGAGGAATGTCATTAATCAGCCGCGCCAGCCCGCTGCCTAAAGGACGCGCCAGCACCATTAACACCAGTAAAAACGTGGCGATCAGTAAGAACCCTTGCGC > NC_000913/728262‑728726
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
