Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
846,743 |
G→C |
13.4% |
A126G (GCG→GGG) |
glnP ← |
glutamine transporter subunit |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 846,743 | 0 | G | C | 13.4%
| 176.9
/ 3.2
| 77 | A126G (GCG→GGG) | glnP | glutamine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (32/33); new base C (6/6); total (38/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGCACCAGGGTAATAATCAGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACTTCAATAAAGACCAGCGCGACGTGGTTGGCTATCCA > NC_000913/846506‑846975
|
aGCACCAGGGTAATAATCAGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTGGAGAATGGTTTCCC‑AACGTGAAAGACCGAg‑cg > 2:754318/1‑238 (MQ=255)
accgaaTAGACCTCCGCCCTGGCGCTCCAGATCTCAAGGGCCGGGAAGTTTCCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAATCAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACg < 2:252738/234‑1 (MQ=255)
aGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGCCGTAGGGAATGGTTTCCC‑AACGTGAAAAACCAAG‑CCCCAGCCCTGCTTCaacaaa > 1:132722/1‑234 (MQ=255)
aGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGGGCCAGCGGTAAAATGACGCAGCGAATGGTTTCCC‑AACGTGAAAAACCGAG‑CGACAGCCCTGCTTCACGaaa > 1:377434/1‑239 (MQ=255)
gATAAAACCCCGCCACGGCGCCCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGaaa < 2:102857/238‑1 (MQ=255)
aTAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACCATAAACAGCGAGGAGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGATTCCC‑ACCGCGAAAGACCGAG‑CGACAGTCCTGCTTCACGaaaa > 2:66234/1‑238 (MQ=255)
aTAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATAAGACGCAGTGCCAGCGGGAAAATGACGTAGCGAATGGGTTCCC‑ACAGTGCAAAAACGAG‑GCGCACGCCTGGTTCACGcaaa > 1:57223/1‑238 (MQ=255)
gAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACCCAGTGCCCGCGGTAAAATGACGGAGCGAAAGGTTTCCC‑AACGTGATAAACCGGC‑CCCCAGTCCTGCTTCACGAAAACCtt > 2:750038/1‑239 (MQ=255)
aaCACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGCCACCATACGCCCCCGTGCCAGCGGTAAAATTACGTAGCGAATGGTTTCCC‑AACTCGAAAGACCCAC‑CCCCAGTCCTGCTTCCCGAAACACttt > 1:442546/1‑239 (MQ=255)
cccccACGGGCCTCCAGATCTCAAGGGCGCGGAATTTACCGGCAATAAGTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTgg < 1:401914/236‑1 (MQ=255)
gCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGCCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGAt > 2:623162/1‑239 (MQ=255)
gCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGGAAAATGACGTAGCGAATGGTTTCCC‑AACGGGAAAGACCGAG‑CGCCAGTCCGGCTTCACGAAAAACTTTGTGGaa > 1:172931/1‑238 (MQ=255)
ccgccgcCCCAGATTCCAAGGGCGGGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGa < 1:844933/235‑1 (MQ=255)
ccgccccccccgttctcTAGGGGGCCGAAGTTCCCGGAAATATGTTCCTGCCCCTGACGGGTCTGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGa < 1:750038/226‑1 (MQ=255)
cTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGGGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGGGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCCCGAAAACCTTTGTGGGTAGACAc‑ca > 2:89565/1‑238 (MQ=255)
ggtctcAGGGGCGCGGAAGTTCCCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAg‑caccgcac < 1:106935/237‑1 (MQ=255)
gATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGGCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAg‑caccgcac < 1:106957/239‑1 (MQ=255)
ctcAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAT‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGAAAGACAG‑CACCGaacca > 2:728016/1‑238 (MQ=255)
aaGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAATCCTGCTTCACGGAAAACTTTGTGGATAAACAA‑ACCCGCACCAcccg > 1:106124/1‑239 (MQ=255)
aaGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGGTTCCC‑AACGGGAAAGACCGGG‑GGCCAGTCCTGCTTCCCGAAAAACTTTTTGGATaaaaaaacccacaccccccg > 1:443566/1‑220 (MQ=255)
cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATTACGTAGCGAATGGTTTCCC‑AACGGGAAAGACCCAG‑CGCCAAGCCTCCCTCCCGAAAAACTTTGTGGATAAACAG‑ACCCCcaccaccccggat > 1:39440/1‑231 (MQ=255)
cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTTTGGATAGACAG‑AACCGCACCACCCGTGAtt > 2:507811/1‑239 (MQ=255)
cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCCAG‑CGCCAGTCCTGCTTCACGAAAAACTTTGTGGATAGACAG‑AAACACACCCCCCGTGAtt > 1:678575/1‑239 (MQ=255)
cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGATTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGAtt > 2:431905/1‑239 (MQ=255)
cgcgGAAGTTACCGGAAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGAt < 2:240600/238‑1 (MQ=255)
cgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGATTCCC‑AACGTGAAAGACCGAG‑CGCCAGCACTGCTTCACGAAAACCTTTGTGGATAGACAG‑AAACGCCCCCCCCGTGAttt > 2:344054/1‑238 (MQ=255)
cgGAAGTTACAGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGCATCCGGTCCACCGGTAAAATAACGTTGCGCATGGTGTCCC‑AACGTGAAAGACCGTG‑ACCCAGCCCCGATTCACGAACAACTTTGTGGAAAGACAc‑caacgccaccaacggagttt > 1:714378/1‑224 (MQ=255)
ggAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTc < 2:39440/238‑1 (MQ=255)
ggAAGTCACCGGCAATACTTTCCTGCCCCGTACGGGTCAGTTCCGACACGTCCATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTc < 2:282977/238‑1 (MQ=255)
ccGGCAATAATTTCTTGCCCCGGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAAtata < 2:514059/239‑1 (MQ=255)
cacaagtgctggCCCCGGGCGGGTCAGCTCCGCCCCGCGCATACAAATAAACGGCGAGGTTTCTTTAATGCCGTGGGTCCACTGGTTCACCAGCGGCGGCAGCATACGCCGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGAGAAAGACCTAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCTAGCGTGAGTTCCTCCATATACgtgc < 1:496652/228‑1 (MQ=255)
aataatTTCTTGCCCCTGACGGGTCAGTTCCGCCAAGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACgcgc < 2:97803/239‑1 (MQ=255)
ataatTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACgcgc < 2:377434/238‑1 (MQ=255)
aaaatTTCTTGCCCTGGAAGGTTCAGTTCCGACCCGGCGATCCAAAAAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCCGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACgcgc < 1:28707/236‑1 (MQ=255)
tttcttctctcttacggttttgTTCCGCCCCGCCCAACACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAg < 1:398000/218‑1 (MQ=255)
tttCGTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAg < 2:252866/239‑1 (MQ=255)
ttCTTGCCCCTGACGGGTCAGTTCCCACACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGt < 2:57223/239‑1 (MQ=255)
tCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGtt < 2:132722/239‑1 (MQ=255)
tCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGtt < 2:751675/239‑1 (MQ=255)
gCCCCTGACGGGTCAGTTCCGCTACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCGCTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATc < 2:896491/239‑1 (MQ=255)
ccccctccgggcacttttcGCCCCGCCGATCACAATAAACAGCGAGGTGTTTTTAATGCTGTTGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCa < 1:817453/221‑1 (MQ=255)
ctggACGGGTCAGTTCCGCCCCGCCGATCACAATAAACAGGCAGGGGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGGAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCatg < 2:125358/236‑1 (MQ=255)
tCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAA‑CACCGCACCACGCGTGATTTCCGCCAAATAAGCGCCGGAGTCGAGCaaataggggacc > 1:748109/1‑228 (MQ=255)
aGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCACTATACGCCCCGGAGTTGGTCATGATGGGGacac > 2:328560/1‑236 (MQ=255)
cacaACAAACAGCGAGGTGTCTTTAAGGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTCCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAACCCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGt < 2:167823/239‑1 (MQ=255)
aaTAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACCCGTGATTTCCGCAAAATCAGCCCCGGGGTTGATCATGATGGGTACCACCCCCGCAGaaaaatgggcga > 1:774601/1‑231 (MQ=255)
ccagacaggcaGGTGCCTTTAATCCGTATGAACCACGGGTTACCCAGCGGCGGCAGCATCCGACCCAGTGCCAGCGGTAAAATGACGTAGCAAATGGTTTCCC‑AACGGGAAAGCCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCg < 2:118485/227‑1 (MQ=255)
aGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATgggcggaagcgaaa > 2:298464/1‑228 (MQ=255)
tgtCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGGCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTgg < 2:846825/137‑1 (MQ=255)
tgtCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGGCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTgg > 1:846825/1‑137 (MQ=255)
tgtCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCCGTAAATGGGTCGATACGTAAGTCGTTa > 2:496132/1‑239 (MQ=255)
tCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑ACCCGCACCACGCGGGATTTCCGCAAAATACGCGCCGGAGTTGATCCTGATGGTGACCACCCCCCCGGGAAATGGGCCGAGGGGTAAgacctgc > 1:118485/1‑231 (MQ=255)
tgatgaTCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGAGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCCAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGGGGATAGACAT‑CACCGACCCCCGCGTGTTTTCCGCACTATACGCACCGCAGTTGACAATGAAGGGGACCACCCCGTCCGAAAATGGGCCGAGCCGTATGACGTAAAAAGCCacggga > 1:880637/1‑234 (MQ=255)
ggattgccctggggTTCCCCAGGGGGGGCTGCATACGAGGCAGGGCCAGGGATAAAATGCGGTACGAAATTGTTTCCC‑AACGGGAAAGCCCGAG‑CCCAAGGCCGGCTTCACGAAAACCTTTGGGGATAGACAG‑CCCCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCgg < 1:507811/226‑1 (MQ=255)
atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCCCGCGGGATTTCCGCAATATACGCGCCGGGGGTGATCATGAAGGGGACCACCCCCGCAGTAAAGGGGGCGAGGGGAAAGTCGTAAAAAGCCAACGGCAg > 1:499976/1‑239 (MQ=255)
atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAg > 2:268221/1‑239 (MQ=255)
atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAg > 2:576315/1‑239 (MQ=255)
atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CAACGCACCACGCGTGATTTCCCCAATATACGCGCCGGAGTTGATCATGATGGTGACCAACGCCCCAGAAAAGGGGTCGAAGCGGAAGAGGTTAAACGCCCACGGCAg > 1:723937/1‑239 (MQ=255)
atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGAAAG‑CACCGCACCACGCGGGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACACCCGCCCCAGGAAAAGGGGCGAGGGGAAAATAGTAAAAAGCCACCGGGAg > 1:400779/1‑239 (MQ=255)
cACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCA‑AACGTGAAAGCCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGaa < 2:443566/239‑1 (MQ=255)
tccccAGGGGCGGCAGCATCCGGCCCAGTCCCAGCTGTAAAATGGCGTAGGTAATGGTTACCC‑AACGTGAAAGACCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCCCCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGaaataaat < 2:499976/236‑1 (MQ=255)
gcggcgGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGCTAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACAACCGCCGCAGGAAATGGGTCGATGCGTAAGTGCATAAACGCCATCGGCCGGGGGAAAAAAAAAAACacc > 1:605568/1‑237 (MQ=255)
ggcggcAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCCATATACGCGCCGGCGTTGATCATGATGGGGACCACCGCCGCAGGAAATGGGTCGATGCGTAAGCCGTTAAAGCCCACCGGCAGGGCGAAAAAAAAAAACAtac > 1:426305/1‑236 (MQ=255)
ggcggcAGCATAAGACCTAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGTG‑CGCCAGTCCTGCTTCACGACAACCTTTGTGGATAGACAG‑CACCGCACCGCGCGTGATTTCCGCACTATAACCGCCGGAGTTGATCATTATGGGGACCAACGCCGCAGGAAAAGGGTCGCTGCGTAAGCCGTTAAAGGGCATCGGCAGGGGGCAAAAAACAAAAACCAc > 1:765947/1‑239 (MQ=255)
gcaTACGACGCAGGGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGCCCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CCCCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGgac < 2:748109/238‑1 (MQ=255)
aTACGACGCAGGGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGgacg < 2:476537/237‑1 (MQ=255)
tGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGAAAGGtgtg > 2:854076/1‑238 (MQ=255)
tGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGAGGACCACGCCCGCCGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCCGGGCGAAATAAAAAAAAAATACCCGGGCGACGAAAggagggc > 1:382299/1‑234 (MQ=255)
ggTAAAATGACGTAGGTAATGGTTTCCC‑ACCGTGAAAGACCGGG‑CGCCAGCCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTAATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 2:723937/239‑1 (MQ=255)
gaaaaaTGACGTAGCCAATGGTTCCCC‑AACGTGAAAGCCCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTGGGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATCCGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 2:106124/236‑1 (MQ=255)
gTAAAATGACGTTGGAGATTTTTCCCC‑AGCGGAAAAGACCGCG‑GCCCAGCCCTGTTTCCAGAAACCCTTTGGGGAAAGACAC‑ACCCGCCCCCGGCGGTATTTCCGCAATATACCGGCCGGAGTTGATCATGATGGTGCCCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 1:2389/238‑1 (MQ=255)
aaaaTGCCGTAGCGAA‑GGTTTCCCAAACGGGAAAGCCCGGG‑CGCCAGTCCTGCTTCACGAAACCCTTTGGGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCa < 2:400779/238‑1 (MQ=255)
aattgcttgagaaaTGGTTCCCA‑AACGGAAAAGCCGGGG‑CCCCATTCC‑GGTTTACGAAAAACCTTTTGGAAAAGCAGCCACCCGACCTCGCGTTATTCCCGCAATAGCCGCGCCGGAGTTGATCAGGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACtt < 1:702318/227‑1 (MQ=255)
aaagcgtgggcgatgggTTTCCC‑AAC‑AGTAAGACCGGGCCGCCAGTCCGGCTCAACAAAAACTTGGGGGGAAAGACAG‑CACCGCACCACGCGTGATTTCAGCAAGACGCGGGCCGGGGTTGACCATGATGGTGACCGCCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACtt < 1:431905/224‑1 (MQ=255)
aaTGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGTTGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGCACACGATTGGTGTGCCGCGGCACACtt > 2:803485/1‑239 (MQ=255)
tAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACCATAGGTGTGCCGCGGATCACTTCAATaaa > 2:530238/1‑239 (MQ=255)
gaaaaGCCCGAG‑CGCCAGTCCGGCTTCACGAAACCCTTTGTGGATAGACAG‑CCCCGCACCACGCGTGATTTCCGAAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 2:481332/205‑1 (MQ=255)
ccGGG‑CGCCAGTCCTGTTACACGAAAACTTTTGTGGATAGACAG‑CGCCGCCCCGCGCGTGTTTTCCGCAATATACGCGCCGGAGTTGATCATGATGGGGACCCCCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACTTCAATAAAGACCAGCGCGACGTGGTTGGCTATCCa < 1:530238/239‑1 (MQ=255)
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AGCACCAGGGTAATAATCAGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACTTCAATAAAGACCAGCGCGACGTGGTTGGCTATCCA > NC_000913/846506‑846975
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A