Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
71 |
67.1 |
1514203 |
90.7% |
1373382 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
134,775 |
T→C |
19.4% |
intergenic (+25/+13) |
yacL → / ← speD |
UPF0231 family protein/S‑adenosylmethionine decarboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 134,775 | 0 | T | C | 19.4%
| 102.8
/ 5.1
| 73 | intergenic (+25/+13) | yacL/speD | UPF0231 family protein/S‑adenosylmethionine decarboxylase |
| Reads supporting (aligned to +/- strand): ref base T (36/19); new base C (2/14); total (38/35) |
| Fisher's exact test for biased strand distribution p-value = 3.59e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATCCACCATGTCATACAGCGCCTTCA > NC_000913/134550‑134996
|
tCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTTGCGGCTTACCGCAATTTCGTGCAGCAGAAGGAAATAAATTTGGCGGAGC‑CGGGGGGCTCCg > 1:720133/1‑229 (MQ=255)
tCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGGGCTCCg > 1:153145/1‑229 (MQ=255)
tCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCATGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCCATTTGTTGCACAGGAAGTAAAAAAATTTTGCGGGGC‑CTGGGGGCTCCg > 2:108222/1‑229 (MQ=255)
gcacggggcaggggaGGAATCCCCCCTGTGGATGGTGGGGGAAGAGGTGATGGTTCGGTCAAATAAACTGAAATTCGCGGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGGGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCag < 2:79894/223‑1 (MQ=255)
gggcagggcaTGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CGGGGGGCTCCGCCAGAGCCGt > 1:446867/1‑229 (MQ=255)
gggcagggcaTGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCCCATTTTGGTGCAGCAGAGGGAAAAAAACTTGGGGGGGC‑CTGGGGGTCCCGcccagaccct > 2:364882/1‑221 (MQ=255)
gggcaTGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTAAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCTGGCAGCAGAAGCAAAAAAATCGTGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTacaa > 1:693839/1‑226 (MQ=255)
gAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCCCCAGAGCCGTTAAACAGCTg > 1:367664/1‑228 (MQ=255)
cacCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGTCGGAGC‑CTGGGAGCTCCCCCAGAGCCGTTAAACAGCTGGCaaat > 1:392551/1‑229 (MQ=255)
acCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGATCCGCCAGAGCCGTTAAACAGCTGGCCTAtt > 1:647617/1‑229 (MQ=255)
cccTGTGGATGGCCGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGACGAAGTAAATAAATCGGGCGGAGC‑CTGGGAGCTCCGCCAAGGCCGTTAAAAACATGGCAAAtta > 2:281126/1‑228 (MQ=255)
tgtgGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGGGCCGTTAAACAGCTGGCATATTgcgc > 1:234421/1‑229 (MQ=255)
gtgGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCCGAGC‑CTGGGGGCTCCGCCCGAGCCGTTAAACAGCTGGCCAATTtcgc > 1:643183/1‑228 (MQ=255)
tggatggaCGGGGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGTCGGAGC‑CTGGGGGGTCCGCCAGAGCCGTTAAAAATCGGGCATATTGCGcc > 1:267104/1‑228 (MQ=255)
ggggtggaCGGGGAAGGGGTGGTGTGTCGCGCCAATCAACTGAAATGCGGTGGCGATGAAATGGAAGAGGGTATGAACTAATCCGACGAAGAAAGCCTTGCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCCCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGcc < 1:376387/224‑1 (MQ=255)
gggatgggCGGTGAAGGGGTGGTGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGGGGGGATTAACTACTACGACGAAGAAAGCCTGTCGCTAGGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTgcgc < 1:364882/226‑1 (MQ=255)
gTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTAACGCAATTTCGTGCAGCCGAAGTAAATAAATCTGGCGGGGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCGGGCACATTGGGCCCGTAATAAAtc > 1:640269/1‑229 (MQ=255)
gTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGAGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCATAAGTAAATAAATCTGGGGGAGC‑CTGGGGCCCCCGCCAGAGCCCTAAAACACATGGCAATCTGGGCCCGtaactaaca > 2:399512/1‑223 (MQ=255)
ggggtGGTTCGCGCCAATCAACTGGAATTCGGTGGCGATGAAATGGAAGAGGGGATGACCTCCTACGACGAAGAAAGCCTGTCGCTAGGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCAAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCa < 1:544859/224‑1 (MQ=255)
ggggtGGGTCGCACCAATCACGGGGAAGTCGGTGGCGATGAAATGGAAGAGGGGAGGAACTACTACGACGAAAAAGGCCTGTCGGTATGGGGTGTTGAGGATTTTAT‑GA‑AG‑GTCGTGGGGGCTTACCGCAATTTCGTGCAGCAGAATTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCa < 2:153145/224‑1 (MQ=255)
aTGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCCGAGCCGTTAAAAAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCAttt > 1:384224/1‑228 (MQ=255)
aTGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAAACGCTGGAATATTGCGCCCGGAATAAATCTCGCGCAatt > 1:150945/1‑228 (MQ=255)
aTGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGCCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTCGGCCCGTAATAAATCTCGCGCAttt > 1:416039/1‑228 (MQ=255)
aTGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGGAAACAAATCTGGCGGAGC‑CCGGGCGCTCCGCCAGAGCCGTTAAAAAACTGGCCTATTTGCACCGTAATAAACCTCCCGCCtttt > 2:745622/1‑228 (MQ=255)
cgcgCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAGGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGCGCCGTTAAACACCGGGCATATTCCGCCCGTACTAAATCTCGCGCATTTCTTTCca > 1:380034/1‑229 (MQ=255)
cgcgCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCATAGCCGTTAAACAGCTGGCATATTGCGCCCGGAATAAATCTCGCGCATTTCTTTccc > 1:532121/1‑228 (MQ=255)
gcaaagcAACGGGAATTGGCTGGCAGGGAAATGGAAGAGGGGATGAACTACGACGACGAAGAAAGCCTGTCCTTATGCGGCGTTGAGGATTTTCG‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTGCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCCCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCAcag < 2:522622/223‑1 (MQ=255)
cgggCGGTGAAAGGGAAGGGGGGATGAACTCCTACGACGAAGAAAGCCTGGCGCTATGCGGCGTTGGGGATTTTCT‑GC‑AG‑GGCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTcgcg < 2:485839/193‑1 (MQ=255)
cTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTccctgcctcttttacacacctccg > 1:485839/1‑206 (MQ=255)
cTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTGATTTCCTgg > 1:657344/1‑229 (MQ=255)
ggggggggATGAATTCCTAGGACAAAGAAAGCTTGTCGCTATGCGGCTGTGAGGATGTTCG‑GG‑AG‑GTCGGGGCGGCTTCCCGAAATTCCGTGCAGCAGAAGTAAATAAATCGGGCGGAGC‑CGGGGAGCCCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGtt < 2:450247/225‑1 (MQ=255)
tcttacGAGCAAGAAAGCCTGCCCCTATGGGGCTTTGGGGATTTTCG‑GC‑GG‑GTCGTGGCGGTTTCCCGCATTTTCGGGCAGAAGAAGAAAATAAAGCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGtt < 2:367664/225‑1 (MQ=255)
actacGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTCATTTCCTGGCGCTCGCTGTCGGTTAGGTCTTCCGGtt > 1:600107/1‑227 (MQ=255)
actacGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCGCGCTGCCGGTTAAGTCCTCCGGGTTg > 2:321633/1‑229 (MQ=255)
ctacGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCATGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATAATGCGCTCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCACCGGGAATATCCTGGCGCTCCCTGTCGGTTAAGGCTTCCCGTTTgg > 1:683673/1‑229 (MQ=255)
tctgtcgaAGAAGGTCTGTTCCTATGCGGGGTTGAG‑‑TTTTTT‑GCAAGAGTGGTGGCGTCTCCGCGAATTTTGGTCCATAAGACGTAATTACTGCGGGCGGAGC‑TTGGGATCTCCGCATGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCAGTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTGGCTGTCGGTTAAGTATTCCGGTTTGgt < 2:131971/224‑1 (MQ=255)
acgagaaagaaagctggtgcttATGTGGCGATGAGGATTTTCT‑GC‑GG‑GTGTGGGCTGCTTACGGCATGTTCGAGAAGCAGAAGTAAATAAGTCTGGCGTGCC‑CTGGGAGCACGCCCAGAGCCGTTAAACAGCTGTCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGgt < 2:108958/207‑1 (MQ=255)
acgaAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCCCAGCCCAGGGGGAATTTCCTTGGGCCCGCCGTCGGTTAAGTCTTCCCGGTTggggggg > 2:666221/1‑224 (MQ=255)
gaaAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGGAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACAt > 1:423893/1‑229 (MQ=255)
gaggctctctgccttGCGGCGTTGAGTATTTTCG‑GC‑GG‑GTGGTGGCGGCTTACCGCAATTTCGTGCAGCCGAAGTAAAAAAATCGGGGGGCGC‑CTGGGACCTCCGCACGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATg < 2:657343/215‑1 (MQ=255)
agcttttggCTAGGGGGCGTGGAGGTTTTGTG‑GC‑GG‑GTCGTGGCGGCTTCCCGAAATTTCGGGCAGCGGAAGTAAATAAACCGGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTa < 2:392551/221‑1 (MQ=255)
gTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCCCAGCGCAGCGGTAAGTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGCTTGGGGTGGagacggtagggc > 1:603190/1‑217 (MQ=255)
gTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGGCTTCCGGTTTGGGGTGGAACATGTAGGGc > 1:195196/1‑228 (MQ=255)
cctttcgggggttttgagtttttGT‑GG‑AG‑GTTGTGGGCGCTGTCCGCCTCTTCGTGAAGCGGAAATAAAAAAGTCTGGCGGAGC‑CTGGGCGCCCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTa < 2:347462/210‑1 (MQ=255)
tggcgTTTGGGATTTTGC‑GC‑AG‑GGCGTGGCGGGTTGCCGCAATTTCGTGCAGCAAGAGAAAAAAAATCCGGGGGGGC‑CTGGGACCCGCGCCAGGGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGa < 2:301029/228‑1 (MQ=255)
gggctTTGAGGTTTTTTT‑GC‑AG‑GTCGGGGCGGGTTCCCGGCATTGAGTCAAGGCATAGAAAATAAATCGGGCGGGGC‑TGGGAAGATCCGCCGGAGGCGGTAAACAGCTGGCATATTACGCCCGTAATAAATCTCGCGCAGTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGa < 2:635774/228‑1 (MQ=255)
cggtttgggtgtgtttCT‑GC‑AG‑GGCCGGGGAGTTTCCCGAAATTCCGGGAAGCAGAATTAACAAAATGTGGTGGAGC‑ATGGGAGCCCGGCAGGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAAGCTCGCGCATGTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTGTGGTGTGGAACATGTAGTGCTTAAGGTCGa < 2:401209/216‑1 (MQ=255)
cggcgTTGA‑GATTTTCTGGA‑AG‑GTCGTGGCGGCTTACCGGAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGACCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGa < 1:666222/229‑1 (MQ=255)
ggcgTTGAGGATTTTCT‑GC‑AG‑GTCGTGGGGGCTTACCGCAATTTCGTGCAGCAAAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGaa < 1:496109/229‑1 (MQ=255)
cgTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGGTAAGTCTTCCGGTTTGGTGTGGAACATGTAAGGCTTAAGGTCGacat > 1:186094/1‑226 (MQ=255)
ttttCT‑GG‑AG‑GTGGTGGCGGCTTCCCGCAATTTCGGGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCAGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGc < 2:186094/228‑1 (MQ=255)
tttCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGGAGAAGTAAATAAATCTGGCGGAGC‑CGGGGAGCTCCGCCAGGGCCCTTAAACAGCTGGCATATTGCGCCCGGAATAACTCTCTGGCATTTCTTTCCGCAGCGCAGCGGGAATTTCCTGTCGCCTGAGGTCGGTTAAGTCGTCCGGTTTGGTGGGGAACCTTATGTGCTTAAGGTCGAACACCTTCAGCaa > 2:540287/1‑229 (MQ=255)
tttCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGGTTGGTGGGGAACATGTGATGCTTAAGGTGGAACCCTTTacacaa > 2:499560/1‑224 (MQ=255)
tttttttggtgtgcggggcgtcTCACGGTAATTTCGTGCAGCAGAAGTAAAAAAAGCGGGGGGCGG‑CTGGGAGCCCCGCACGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAg < 2:688642/212‑1 (MQ=255)
cgtgggggcgggggggcTTCCCCAAATTTCGTTCAGCAGAAGAAAAGAACT‑TGGGGGGGCTCTGGAGGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGTCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACAt < 2:647616/215‑1 (MQ=255)
ggggcgttacggatatgccGTGCAGGAGAAGAAAAGAATTGGGGGGGAGC‑CGGGGAGCCGCGCAGGAGCCGTTAAACAGCTGGCATAGTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGa < 2:183634/211‑1 (MQ=255)
ggcggcTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAGATCTTTAAGCAACATCTTG‑GTATgg > 1:602252/1‑228 (MQ=255)
ggcgcgttcccGCAATTTGGGTCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGCGCCCCGCCAGGGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGa < 1:72759/220‑1 (MQ=255)
ttACCGCAATTTCGTGCAGCAGAAGGAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCCTATTGGGACCGGAATAAATCTCGCGGATTTCTTTTCCCAGCGCAACGGATATTTCCTGCGCCCCGCCGTGGGTTTAGTCTTCCGGCTTGGGGGGGGAAAGTGATGGCTGTAGCTCGGACTCTTTTATGAAAGACTTG‑GGATGGAAGatat > 2:497355/1‑229 (MQ=255)
ttgcggccagaagAAGTAAATAAATCTGGCGGAGC‑TGGGAACCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGa < 1:108222/221‑1 (MQ=255)
tGCAGCAGAAGTAAATAAATCTGTCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATATCGCGCGTTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAATCTTCCGGATTGGTGTGGAACATGTAGGGCTTATGGTCGAACTCTTTAAGCAACATCTTT‑GTTTGGTAGGTGTTTTCCTGCTAGAc > 1:728832/1‑228 (MQ=255)
gcagAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCACCGCCAGAGCCGTTAAACAGCTGGCATAGTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTca < 1:87094/229‑1 (MQ=255)
aaGTAAATAATTGTCGCCGAGC‑TGGGGATCCCCGCCCGAGCCGTTAAACAGCTTGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCACCATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATc < 1:702844/229‑1 (MQ=255)
gtaaatatgttggggggggC‑CTGGGGGCCCCCCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATcca < 2:195196/211‑1 (MQ=255)
taaataatGCGGGCGGTGC‑CTGGGATCTCCCCCAGAGCCTTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGACCTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATcca < 1:497355/228‑1 (MQ=255)
taaataaaTCGGGCGGATC‑CTGGGAGCTCCGCCGGGGCCGTTAAACAGCGGGCATATTGCGCCCGTAATAAAGCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATcca < 1:399512/228‑1 (MQ=255)
taaataaaGTTGGGGGAGC‑CGGGGAACTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCACGTAATAAAGCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATcca < 1:609046/228‑1 (MQ=255)
gagacaggtCTGGCGGTGC‑CTGGGTGCTCCGCCAGGGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATcca < 1:409309/220‑1 (MQ=255)
aaataattTGGGGGGGGC‑CTGGGCGCCCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATccacc < 2:446867/229‑1 (MQ=255)
aataatgtgggCGGGGC‑TCGGGAGCCCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATccacc < 2:423893/219‑1 (MQ=255)
ggCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCAGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGGAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGGTTGGACCATGTAGGGCTTAAGGTCGAACTCTTTAAGCAAC‑TATTGTGGATGGAAGAAATTTTCCCGTTCGACGtctccacacaccacctcatcaa > 2:494845/1‑208 (MQ=255)
ggggggC‑CTGGGGGCCCCCCCAGGGCCCTTAATCAGCGGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATCCACCATGTCATACAg < 2:640268/224‑1 (MQ=255)
c‑cTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGCAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGGAGATATTTTCCTGTAAGACGTTCACATCTATCAttccactctggcctct > 2:409309/1‑214 (MQ=255)
tggggtgtCCGCGAGAGCCGTTAAACAGCTGGCACATTGCCCCCGTAATAAATCCCGCGGGTTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATCCACCATGTCATACAGCGCCTTCa < 2:532121/222‑1 (MQ=255)
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TCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAATTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT‑GC‑AG‑GTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAAATAAATCTGGCGGAGC‑CTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATTTCTTTCCACAGCGCAGCGGTAATTTCCTGGCGCTCGCTGTCGGTTAAGTCTTCCGGTTTGGTGTGGAACATGTAGTGCTTAAGGTCGAACTCTTTAAGCAACATCTTG‑GTATGGAAGATATTTTCCTGATAGACGTTCACATCCACCATGTCATACAGCGCCTTCA > NC_000913/134550‑134996
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
