Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
71 |
67.1 |
1514203 |
90.7% |
1373382 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,734,567 |
G→A |
15.1% |
D45N (GAT→AAT) |
mepH → |
murein DD‑endopeptidase, space‑maker hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,734,567 | 0 | G | A | 15.1%
| 138.8
/ 2.3
| 55 | D45N (GAT→AAT) | mepH | murein DD‑endopeptidase, space‑maker hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (41/5); new base A (2/7); total (43/12) |
| Fisher's exact test for biased strand distribution p-value = 1.16e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCTCTTCTTCTATGCATTAGAATCATCAAGTTTTGTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTAAGGGCTATAAATCGCATTGTGTGAAA > NC_000913/1734352‑1734794
|
tctcTTCTTCTATGCATTAGAATCATCAAGTTTTGTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGAACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCCTATCACCAAAAACCCAAATaaaaaacaaa > 2:94924/1‑223 (MQ=255)
tGCATTAGAATCATCAAGTTTTGTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCCCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAGGCAAGCCTGGTCGAGTTCTGCTACCACTCATATCTCCAAAAAAGCTGATAAAAAGAAAAGCCCGGCAacac > 1:401253/1‑226 (MQ=255)
tGCATTAGAATCATCAAGTTTTGTAAATCAGACGCAAGCATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGCTACACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTAACACCCTTCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGCGAGTTTTGCTACCCAACAAATAACCAAAACACAAAGTAAAAACAAAAGAACgcccaaccc > 2:443367/1‑221 (MQ=255)
tAGAACCATCAAGTGTTGTAAATCAGCCGCAGGCATGATAGACCTGCCTTTACAGGTGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCaaaa < 1:724277/229‑1 (MQ=255)
gAATCATCAAGTTTTGTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGCTAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGCGAGTTCTGCTACCAATCATATCACCAAAAAAGCAGAAAAAAAGAAAAGCACGGCAACCACCaaaaaa > 2:727533/1‑228 (MQ=255)
ttttGTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTCCCACTCATATCACCAAAAAAGCAGATCAAAAGAAAAGACCGCCAACAAccaaaaaaaccaaaaaaaa > 2:246100/1‑228 (MQ=255)
gTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGc > 1:449095/1‑228 (MQ=255)
aCGCAGGCATGATAGACCTGCCTTTACAGAGTGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCAATGAAACCACCAAAAAGACCCAAAAAACACCGaaaaaaaac > 2:574707/1‑226 (MQ=255)
cGCAGGCATAATAGCCCTGCCTTTAAAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTCCGATCCCGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTAAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAgccg < 1:445403/229‑1 (MQ=255)
cgcgtcataatgcgccTGCCGTTACAGGGGGCCGCGCAGTTGCTGGGATAAACCGTTTTTCGATCGCTCTCGGGGCTTTGCTTTTTACCCCCCTGCCGTTACCGCTTAGGCCCCATGCTTAAAAGAAAGCAAGGGAGATTTCTGCTACAACTAATATCACAAAAAAAGCAGATAAAAAGAAAAGCCAGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAgccgc < 2:397996/215‑1 (MQ=255)
ccTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCCCCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAgaagga > 1:548042/1‑224 (MQ=255)
ccTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTGACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAACGCAAGCCAGGGAGAGTTCTGCTACCAATCATTTCACCAAAAAACCAGATAAAAAGAAAAGCAAGGCAACCACCAACAAAACCCAGAAAACAGCGAAAAAAACCCGCAGTcaaacgacag > 1:753413/1‑223 (MQ=255)
gCCTTTCCAGAGGGCCCTTCAGTGGCGGGGATAAACCGTATTCCGATCCCGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTCCCACTCATATCACCAAAAAAGCAAATAAAAAGAAAAGCACGGCACCCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCa < 1:94924/229‑1 (MQ=255)
ccTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACACCGAAAAAAGCCGCCAGTAAAAGAAAGACCa > 1:740090/1‑228 (MQ=255)
gggACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCACAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCCGCTAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAAAAGCGAAAAAAACCGCCAGTAAAAGCAACACCAAAAACcaaaac > 2:733914/1‑227 (MQ=255)
gggACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATCTCCCCAACAAAGCAGATAAAAAGAAAAACCCGGCCACCACCAAACAGACCCAGAAAAAAGCCAAAAAAGCCGCCAGCAAAAGAACGACCAaaaacaaaaca > 2:165457/1‑228 (MQ=255)
gggACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATTACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCACGTAAAAGTACGACCAAAAGCAAAAca > 1:240890/1‑228 (MQ=255)
gggACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGACAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAACAAGACCCAGAAAACAGCACACAAAGCCGCCAGGAAAAGATAGACCAAAAGAAAAAca > 1:264894/1‑228 (MQ=255)
cTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGcatct > 1:24367/1‑229 (MQ=255)
cTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATAACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAAACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCcctcct > 2:186999/1‑229 (MQ=255)
tGGCGCGGATAAACCGTATTTCGATCCCGCTCTGTGCTTTACTTTTTACCCCCCTGCCTTTAACGCCTATGGCCCATGCTTAAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACAAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGAcc < 1:130752/206‑1 (MQ=255)
tGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCCCCAAAAAGACCCAGAAAAAAGCGAAAAAAGCCGCCACAAAAACAACGACCCAAAACAAAAcccataacctaa > 2:130752/1‑218 (MQ=255)
aCCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAACCGCCCGTAAAAGTACGACCCAAAGCAAAAACGCTTCTTCCGTTAAAAAATCTTc > 1:452838/1‑229 (MQ=255)
ttcaaccACCCTCTGTGTTTTCTTTTTCCCCCCCCTGCTTTTAACCCGTATGGCCATGGCTAAAAAGAAGACAAGGGAGAGTTCGGCCACCCACCAAATCACCAAAAAAGCAAAAAAAAAGAAAAGCACGACACCCACCAAAAAGACCCAAAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTAcc < 2:449095/223‑1 (MQ=255)
tgtgCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTCCGACCCAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATAACCCCTTCCAAAAAcc > 2:675451/1‑228 (MQ=255)
tgCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCCAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAATAAAAGCACGACCAAAAGCAAAACCGATTCTTACGTTAACAAATCTTCCATTACCGATTCTAAAAACGcc > 1:616605/1‑229 (MQ=255)
tgCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAACACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGATTCTTCAGTTAAAAAATCTACCATTACCGCTTCTaaaaaaccc > 2:507051/1‑225 (MQ=255)
tgCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGAACGACCAAAAGCAAAACCGATTCTTACGTTAAAAAATCTTCCATTACCCCTTCTAAAAACAcc > 2:752953/1‑229 (MQ=255)
tgCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGAACGACCAAAACAAAAACCGCGTCTTCCGTGAAAAAATCTTCCATAAccccaccccaaaacacc > 2:379036/1‑214 (MQ=255)
tgCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAAAAGCGAAAAAAGCCCCCCGTAAAAGTACGACCAAAAGCAAAACCGATTCTTCCGTTAAAAAATATTCCATTACCGCTTCTAAAAACGc > 1:710783/1‑228 (MQ=255)
tACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGCTAAAAAGAAAAGAACGGCAACCACCACAAAAACCCAGCAAACAACCAAAAAACACGCCACTAACAGTCCGACCAAAAGCAAAACCGCCTCCTCCGTTAAAAAAAATACCATTACCGCTACAAAAAAACCCaaacc > 2:248110/1‑227 (MQ=255)
tACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACCCCAAAAc > 1:80028/1‑229 (MQ=255)
tcTTTTCCCCCCCCTGCCTTAAACCCCTAGGCCCAACACTAAAAACAAAGACAGGAAAATTACCGCAACCACAAACAACACAAAAAAAGAAAAAAAAAAAAAAAGCGCGGAAACCACAAAAAAGACCAAAAAAACCGCAAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACt < 2:240288/228‑1 (MQ=255)
tttACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGCAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTACAAAATCTTCCATTACCGCTTCTAAAAACGCCACAACt > 1:240288/1‑225 (MQ=255)
tttACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACAAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCATCTAAAAACGCCAAAACTCgc > 1:512599/1‑228 (MQ=255)
ccTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCg > 1:84718/1‑229 (MQ=255)
ccTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCg > 1:499735/1‑229 (MQ=255)
ccTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACAAACAAAAGCAAAACCGCTTCTTCCGTTAAAAACACTTCCATTACCGCTTCTACAAACGCCAAAACCCCCACCaaaaccaccg > 2:655692/1‑222 (MQ=255)
ccTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAATACGACCAAAAGCAAAAACGCTTCTTCCGTTAAAAAATCTTCCATTACCGCCTCTAAAAAAGCCAAAACTCCCAGCAAACACGCCg > 2:516891/1‑229 (MQ=255)
cTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTACAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAAc > 1:43509/1‑229 (MQ=255)
cTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGAAAAACCGCATCTTCCGTTAAAAAATCTTCAATTACCGCCTCAAAAAACACCAAAACTCCACAAAAAAACACCGTCAAAAAAAc > 2:278754/1‑229 (MQ=255)
tATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAAc > 1:427418/1‑228 (MQ=255)
tGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACAAGCCGTCAATAAAACGGCCCcagcc > 1:342711/1‑229 (MQ=255)
tGCTTCAAAGCAAGCCAGGGAGAGTTATGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTACGTTAAAAAATATTCCATTAACGCTTCTAAAAACGCCAAAACTCGCAGCAAAAACGCCGGCAATAAACAGGCCTaagcc > 1:396357/1‑229 (MQ=255)
gcaagcCGGGAAAATTTCTGCTCCCACCAAAACCACAAAAAAACAAAAAAAAAAGAAAGGCACGCAAACAACAAAAAAAACCAAGAAAACAGCAAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTAcc < 1:246100/229‑1 (MQ=255)
gTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCCTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACCCGCCGTCAATAAAACGGCCCCAGCCCGCTTTACCGAAAAggggacaaa > 2:552425/1‑221 (MQ=255)
ccaCCACGCAAAACACAAAAAAAGCAGAAAAAAAGAAAACCACGGCAACCACCAAAAAGACCAAAAAAACAGCAAAAAAAGCCGCCAGAAAAAGTACGACCAAAAGAAAACCCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTa < 1:516891/226‑1 (MQ=255)
aaccaccaataccccaaaaaaaGCAAAAAAAAAAAAAAGCCCGGCAACCACAAAAAAGCCCCAAAAAACAGCAAAAAAGGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTaa < 1:727534/212‑1 (MQ=255)
aCTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACCCCGTCAATAAAACGGCCCCAGCCAGCTTTACCCAAAAACGTACCCAACTCAAgggaa > 2:472665/1‑227 (MQ=255)
ccaaaacccaaaaaaaaGAAAAAAAAAAAAAAAGCACGCCAACAACAAAAAAGCCCAAAAAACCGGAAAAAAAACCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTAAGGGCt < 1:675452/217‑1 (MQ=255)
cATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGGGTACCAAACGAAAGGGCtata > 1:477715/1‑229 (MQ=255)
aaaaaaaaGAAAAAAAAAAAAAACCCACAGAACACACCAAAAAGCCCAAAAAAAGAGCGAAAAGATCCGCCAGTAAAAGTACGACCAAAAGAAAACCCGCTTCTCCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTAAGGGCTATAAAGCGCa < 2:628486/227‑1 (MQ=255)
cAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAACCGTAAGGGCTATAAATCGCa > 1:139257/1‑228 (MQ=255)
aaaaGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTCAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGACAACACTCCGTCAATAAAACAGCCTCAGCCAGCTTTACCGAAAAGTGACCCAAACGTAAGGGCTATAAATACCATtgt > 1:265394/1‑229 (MQ=255)
aaaaGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAAAACACCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTAAGGGCTATAAATCGCATtg > 1:628487/1‑228 (MQ=255)
gATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTAAGGGCTATAAATCGCATTTGGTGaaa > 1:136728/1‑228 (MQ=255)
|
TCTCTTCTTCTATGCATTAGAATCATCAAGTTTTGTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCTTCTTCCGTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAGCTTTACCGAAAAGTGTACCAAACGTAAGGGCTATAAATCGCATTGTGTGAAA > NC_000913/1734352‑1734794
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
