Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F14 I1 R1
|
20 |
132.7 |
2830606 |
92.0% |
2604157 |
148.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP000730 |
1,196,508 |
C→A |
intergenic (+2563/‑1229) |
ftsQ → / → ylmE |
cell division protein FtsQ/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 1,196,508 | 0 | C | A | 99.1%
| 333.6
/ NA
| 110 | intergenic (+2563/‑1229) | ftsQ/ylmE | cell division protein FtsQ/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (52/57); total (53/57) |
| Fisher's exact test for biased strand distribution p-value = 4.82e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 110 total aligned reads displayed.
TTAATATGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTCTAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGACGTTC > CP000730/1196364‑1196649
|
ttAATATGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAg > 1:284423/1‑148 (MQ=255)
tatGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAAt > 2:1383752/1‑148 (MQ=255)
atGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCTTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATAATTATAGCAATg > 2:556214/1‑148 (MQ=255)
atGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATg > 2:699902/1‑148 (MQ=255)
tGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGc > 1:524143/1‑148 (MQ=255)
tGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGc > 1:714982/1‑148 (MQ=255)
tGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGc > 2:141179/1‑148 (MQ=255)
gATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCCCTGGATTCCGCCCAAGCGTAAAGACTTATAGCAATGCa > 1:27763/1‑148 (MQ=255)
gATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAGATACTTATAGGAATGCa > 2:727863/1‑148 (MQ=255)
aTTTTCGGTACAGTTATTAATCATGAATTACAAGATGAGATTGTTGTAACAGTTATAGCAACTGGTT‑‑TTGATGAGAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCaa > 2:623801/1‑148 (MQ=255)
ttttCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAAc > 1:766611/1‑148 (MQ=255)
ttttCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAAc > 2:1324968/1‑148 (MQ=255)
ttttCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGGAAATATGGTAGCGCTGGATTCGGAACAAGCGTAAATACTTATAGCAATGGAAc > 2:498516/1‑148 (MQ=255)
tttCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACt < 2:1247764/148‑1 (MQ=255)
ggTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTTACGGATCCTGC‑‑CTGGTTTGTTGGTGGCGAACCACCATCACATGGTGGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTa < 2:1353820/148‑1 (MQ=255)
ggTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTa > 1:1280337/1‑148 (MQ=255)
gTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTaa < 1:865655/148‑1 (MQ=255)
gTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATg < 1:776685/148‑1 (MQ=255)
ttattaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGa < 1:1354477/148‑1 (MQ=255)
tattaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGaa > 2:1342646/1‑148 (MQ=255)
tattaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGaa > 1:278961/1‑148 (MQ=255)
ttaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAACAATGCAACTTCTAAAGATGAATc > 1:1109174/1‑148 (MQ=255)
ttaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACGTATAGCAATGCAACTTCTAAAGATGAATc > 2:894803/1‑148 (MQ=255)
aaTCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCAt > 2:986869/1‑148 (MQ=255)
aaTCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCCGAACAAGCGCAAATACTTCTAGCAATGCAACTTCTAAAGATGaaccct > 1:913921/1‑144 (MQ=255)
aTCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGCCAAACCAACATCACATGGTCGTAAATCTGGTGGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCAtt > 2:1132934/1‑148 (MQ=255)
aTCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCAtt > 2:1231665/1‑148 (MQ=255)
aTCCTGAATTACAAGATGAGATAGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCAtt > 1:754021/1‑148 (MQ=255)
ccTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCAttac > 1:313099/1‑146 (MQ=255)
ccTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCa > 1:1099991/1‑148 (MQ=255)
ccTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCa > 2:1086959/1‑148 (MQ=255)
ccTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCa > 1:1100115/1‑148 (MQ=255)
aTTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCa < 2:248522/148‑1 (MQ=255)
aCAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAAt < 1:1213551/148‑1 (MQ=255)
cAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAAtt < 1:1293934/148‑1 (MQ=255)
aaGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATtc > 1:1403705/1‑148 (MQ=255)
aGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATtca > 2:1160540/1‑148 (MQ=255)
aGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTACTAAAGATGAATCATTCACTTCAAATtca > 2:1038226/1‑148 (MQ=255)
gATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGAAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATtcat < 1:952643/148‑1 (MQ=255)
aTGAGATTGTTGTAACAGTTTTTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATtcatc < 2:522349/148‑1 (MQ=255)
gagaTTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCaa > 1:1123364/1‑148 (MQ=255)
aTTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCTTTCACTTCAAATTCATCAAATg < 2:955332/148‑1 (MQ=255)
aTTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATg < 2:451870/148‑1 (MQ=255)
aTTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCGAAAGATGAATCATTCACTTCAAATTCATCAAATg < 2:876375/148‑1 (MQ=255)
ttgtAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATtca < 1:1298191/137‑1 (MQ=255)
ggtAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACaa < 2:1183094/147‑1 (MQ=255)
aCAGTTATTGCTACTGGTT‑‑TTGATGACAAACCGACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTTAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCCCTTCAAATTCATCAAATGCACAAGCaa < 2:787287/148‑1 (MQ=255)
aCAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGCACATGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCaa > 1:278099/1‑148 (MQ=255)
aCAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGCACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACCAGCac > 1:1323962/1‑147 (MQ=255)
aCAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATATCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCaa < 2:1110289/148‑1 (MQ=255)
cAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAAc > 2:341108/1‑148 (MQ=255)
cAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAAc > 2:324722/1‑148 (MQ=255)
cAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAAc > 2:961696/1‑148 (MQ=255)
cAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAAc > 2:1182883/1‑148 (MQ=255)
ttGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGAAACTGATAg < 1:1342646/148‑1 (MQ=255)
gccaCTGGTT‑‑TTGATTACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGTTTCGGCACAAGCGTAAATTCTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAgtg < 2:500400/145‑1 (MQ=255)
ggTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCTCAAGCAACTGATAGTCTAAGTg < 2:956524/148‑1 (MQ=255)
ggTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTg < 2:474553/148‑1 (MQ=255)
tt‑‑ttGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGaa > 1:1368146/1‑148 (MQ=255)
gctgaCAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCAGAAGCAACTGATAGTGTAAGTGAAAGaa < 2:1343309/146‑1 (MQ=255)
gatgaCAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGaa < 1:560210/148‑1 (MQ=255)
aaCCAACATCACATGGTCGTAACTCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATAc > 1:779335/1‑148 (MQ=255)
aaCCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGCTGACTCATTCACTTCAAGTTCATCAAATGCACAAGCAACTGATAGTGTAATTTAAAAAACACATat > 1:29352/1‑147 (MQ=255)
aaCCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGGAAAAGCAACTCATAGTGTAAGGGAAAGAACACATAc > 2:384923/1‑148 (MQ=255)
aaCCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAAGACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATAc > 1:619098/1‑148 (MQ=255)
aCCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACa < 1:1230993/148‑1 (MQ=255)
aCCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACa < 1:228370/148‑1 (MQ=255)
ccAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACaa < 1:653298/148‑1 (MQ=255)
ccAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACaa < 2:278961/148‑1 (MQ=255)
cAACATCACATGGTCGTAAATCTGGTAGCACTAGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATAAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAAc < 2:785826/148‑1 (MQ=255)
aaCATGACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACt < 2:913921/148‑1 (MQ=255)
aCATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTa < 1:986869/148‑1 (MQ=255)
aCATCAAATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTa < 1:1131772/148‑1 (MQ=255)
aTCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTaaa < 1:1324968/148‑1 (MQ=255)
aTCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTaaa < 2:766611/148‑1 (MQ=255)
tCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAAATGAAACATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAACGAACACATACAACTaaaa > 2:1207106/1‑147 (MQ=255)
tCACATGGTCGTAAAGCTGGTAGCACTGGACTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAaag < 2:77407/148‑1 (MQ=255)
aTGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACCCATACAACTAAagaaga > 1:1205712/1‑148 (MQ=255)
aTGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAagaaga > 1:1205747/1‑148 (MQ=255)
tGGTCGTAAATCTTGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAgat < 1:473924/148‑1 (MQ=255)
gTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAgatga < 2:1175682/148‑1 (MQ=255)
gTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAgatga < 1:623801/148‑1 (MQ=255)
aTCTGGTAGCACTGGATTCGGAACCAGCGCAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCt > 2:1001686/1‑148 (MQ=255)
aTCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCt > 2:938239/1‑148 (MQ=255)
tGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGc > 1:711776/1‑148 (MQ=255)
gTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCtt < 2:246627/148‑1 (MQ=255)
aGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCa > 1:1246276/1‑148 (MQ=255)
cttgctccgcaaCAAGCGTACATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTCACTTCaattg < 2:1068365/138‑5 (MQ=255)
tGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGa < 2:1108675/148‑1 (MQ=255)
tGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGa < 2:902173/148‑1 (MQ=255)
tGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGa < 2:902213/148‑1 (MQ=255)
tGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATCAATCATTCACTTGAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGa < 2:963803/148‑1 (MQ=255)
ggATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTCCATTAGaa < 2:739407/148‑1 (MQ=255)
gATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAGGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGaaa < 2:754021/148‑1 (MQ=255)
aTTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAAt < 1:699902/148‑1 (MQ=255)
aTTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAAt < 1:556214/148‑1 (MQ=255)
cGGAACCAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATaga < 2:407971/148‑1 (MQ=255)
gAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTAAGTTACAGCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAgaga < 1:324722/148‑1 (MQ=255)
gTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGAc < 2:278099/148‑1 (MQ=255)
aTACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGACGTTc > 1:1360906/1‑148 (MQ=255)
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TTAATATGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTT‑‑TTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTCTAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGACGTTC > CP000730/1196364‑1196649
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
