Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F70 I1 R2 12 34.5 799746 91.8% 734166 135.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP000730 2,144,161 4 bp→TGGTTTATCT coding (480‑483/1254 nt) sdrH ← Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP000730 2144161 2144164 4 22 [0] [0] 17 sdrH Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 21441600 (0.000)17 (0.540)
+TGGTTTATCT		 13/250 1.8 100% coding (484/1254 nt) sdrH Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH
?CP000730 2144165 = 0 (0.000)coding (479/1254 nt) sdrH Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH

GATK/CNVnator alignment

N/A