Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F55 I1 R1	10	36.2	825780	86.3%	712648	148.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	CP000730	1,441,102	(TGTTG)_1→2	coding (127/624 nt)	xpaC →	5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1441097	0 (0.000)	36 (1.030) +TGTTG	16/274	0.6	100%	coding (122/624 nt)	xpaC	5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC
*	?	CP000730	1441098 =	0 (0.000)	36 (1.030) +TGTTG	16/274	0.6	100%	coding (123/624 nt)	xpaC	5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC

AATGCTAAATAAAGGAAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1440952‑1441097

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTAAA  >  CP000730/1441098‑1441241

                                                                                                                                                  |||||

AATGCTAAATAAAGGAAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTG                                                                                                                                                     >  1:70424/1‑148

AATGCTAAATAAAGGAAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTG                                                                                                                                                     >  1:290736/1‑148

AATGCTAAATAAAGGAAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTG                                                                                                                                                     >  1:87049/1‑148

               AAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTT                                                                                                                                      <  2:380400/148‑1

               AAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTT                                                                                                                                      <  2:289456/148‑1

                  ATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAAT                                                                                                                                   <  2:245166/148‑1

                  ATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAAT                                                                                                                                   <  2:350660/148‑1

                  ATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAAT                                                                                                                                   <  2:220428/148‑1

                  ATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAAT                                                                                                                                   <  1:352619/148‑1

                   TGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATG                                                                                                                                  >  2:190046/1‑148

                   TGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATG                                                                                                                                  >  1:130322/1‑148

                   TGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATG                                                                                                                                  >  2:297072/1‑148

                   TGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATG                                                                                                                                  >  1:200265/1‑148

                                   TATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATAC                                                                                                                  <  1:345780/148‑1

                                   TATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATAC                                                                                                                  >  2:83024/1‑148

                                   TATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATAC                                                                                                                  >  2:307022/1‑148

                                   TATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGGTGTGTTGGCTTTTTAATGACATACCTACCGATAC                                                                                                                  >  1:381971/1‑148

                                    ATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTGTTAATTGATATGTCGATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACA                                                                                                                 >  1:390817/1‑148

                                          CATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACT                                                                                                           <  1:369661/148‑1

                                          CATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACT                                                                                                           <  2:154649/148‑1

                                                        GTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAAT                                                                                             >  1:30396/1‑148

                                                        GTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAAT                                                                                             <  1:228647/148‑1

                                                        GTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAAT                                                                                             >  1:234488/1‑148

                                                                       taTAGCATTTTTAACAAGCATATTTGTGATTATTGCACGTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATAAAAAAAAAAAAAAAAACTCACTTCACGCAAATATTTAAACGAAATTG                                                                              <  2:300862/146‑1

                                                                       TGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTG                                                                              <  1:205592/148‑1

                                                                       TGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTG                                                                              <  1:144507/148‑1

                                                                               TTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACT                                                                      >  1:159233/1‑148

                                                                               TTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACT                                                                      >  1:279907/1‑148

                                                                                          ATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTA                                                           >  1:107236/1‑148

                                                                                          ATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTGGGCTGTTTAATTACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTA                                                           >  1:370151/1‑148

                                                                                                       TTGCACTTGATGTATCTTTTTTATTTGATTTTTCTATTGGTAGTGGTGTGGTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACTAAATTGGTTTGACTAGAAAAGACTATCTCTATATTCGA                                              >  2:370128/1‑148

                                                                                                       TTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTAAATTAACGAAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGA                                              >  1:102472/1‑148

                                                                                                       TTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGNATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATGGCTATATTCGA                                              >  1:319468/1‑148

                                                                                                         GCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTTATTTCTTACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAA                                            >  2:33401/1‑148

                                                                                                             TTGATGTATCTTTTTTAATTGATATGTCTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAG                                        >  2:167914/1‑148

                                                                                                                                        CTATTGGTATTGTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACCTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACCTAGA             >  2:86232/1‑148

                                                                                                                                                   tTTGTGTTGGCTTTTTAATGACATAACTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTAAA  <  2:290736/147‑1

                                                                                                                                                   GTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTAAA  <  2:70424/148‑1

                                                                                                                                                   GTTGTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTAAA  <  2:87049/148‑1

                                                                                                                                                  |||||

AATGCTAAATAAAGGAAGATGACAGTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTAACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1440952‑1441097

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTAAACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACACACCAAAAACTTAGAGGTATTTTAAA  >  CP000730/1441098‑1441241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A