Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,704,135 |
A→T |
5.3% |
I209I (ATT→ATA) |
dppC ← |
dipeptide/heme ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,704,135 | 0 | A | T | 5.3%
| 697.2
/ 20.3
| 187 | I209I (ATT→ATA) | dppC | dipeptide/heme ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (93/84); new base T (5/5); total (98/89) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 |
Only 100 of 194 total aligned reads displayed.
ACACGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAATCG > NC_000913/3703987‑3704283
|
acacGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTta > 3:1871996/1‑149 (MQ=255)
acacGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTta > 1:1023758/1‑149 (MQ=255)
cacGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTtaa < 1:1750723/149‑1 (MQ=255)
cGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAAc > 3:265603/1‑149 (MQ=255)
gCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGa < 3:302116/149‑1 (MQ=255)
cATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGa > 3:711607/1‑148 (MQ=255)
tGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGc < 3:1192703/149‑1 (MQ=255)
gTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCAt < 1:49165/149‑1 (MQ=255)
tGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATc < 1:875646/149‑1 (MQ=255)
ccccACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGc > 2:590179/1‑149 (MQ=255)
cccACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACAt < 4:849386/136‑1 (MQ=255)
cccACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGcc > 3:902756/1‑149 (MQ=255)
aCTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCg < 1:1347711/149‑1 (MQ=255)
tCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACa < 1:353866/130‑1 (MQ=255)
tCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGc > 4:176694/1‑149 (MQ=255)
ggCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACAt < 4:687951/128‑1 (MQ=255)
ccccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCa > 1:1711453/1‑137 (MQ=255)
ccccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCa < 2:1711453/137‑1 (MQ=255)
ccccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCgg > 2:1462982/1‑149 (MQ=255)
cccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCAt > 4:1088858/1‑119 (MQ=255)
aTGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc < 4:739803/149‑1 (MQ=255)
aTGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc < 3:361095/149‑1 (MQ=255)
cGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTaa < 3:845863/149‑1 (MQ=255)
gAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAAt < 4:1613373/149‑1 (MQ=255)
aGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATc > 4:885950/1‑149 (MQ=255)
ggAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCgaga < 1:1681816/133‑1 (MQ=255)
ggAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCgaga > 2:1681816/1‑133 (MQ=255)
ggAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCga > 1:1080554/1‑131 (MQ=255)
gAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc > 4:525342/1‑141 (MQ=255)
gAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc < 3:525342/141‑1 (MQ=255)
gAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgc > 2:1809297/1‑149 (MQ=255)
gAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgc > 2:1270746/1‑149 (MQ=255)
aaaCCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgcg < 1:1270746/149‑1 (MQ=255)
ccAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTTATTAAc < 1:833258/93‑1 (MQ=255)
cAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc > 3:1506746/1‑136 (MQ=255)
cAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGt > 2:1406620/1‑138 (MQ=255)
cAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTa > 3:592795/1‑149 (MQ=255)
agagCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCg < 2:477405/103‑1 (MQ=255)
agagCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCg > 1:477405/1‑103 (MQ=255)
gcCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTTATTAACATCttc > 3:1095165/1‑88 (MQ=255)
gcCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTccac < 2:923722/149‑1 (MQ=255)
ccATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTTATTAACATCtt > 2:405449/1‑87 (MQ=255)
cATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGa > 1:611734/1‑125 (MQ=255)
atatCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCgg > 4:606085/1‑135 (MQ=255)
atatCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCgg < 3:674381/135‑1 (MQ=255)
atatCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCgg < 3:606085/135‑1 (MQ=255)
atCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCa > 3:1587559/1‑149 (MQ=255)
tCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCa > 1:631519/1‑148 (MQ=255)
ggCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGgcgc > 3:1722690/1‑149 (MQ=255)
cGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCgg < 4:918831/149‑1 (MQ=255)
cGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCgg < 4:1870980/149‑1 (MQ=255)
gagaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCgg > 3:409205/1‑144 (MQ=255)
gagaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCgg < 4:409205/144‑1 (MQ=255)
gaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTcc < 4:1420009/124‑1 (MQ=255)
gaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAgc > 3:1847853/1‑149 (MQ=255)
gaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAgc > 4:577095/1‑149 (MQ=255)
aaCCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATaaa > 1:852601/1‑58 (MQ=255)
aCCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGca < 1:1811755/149‑1 (MQ=255)
ccGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTCAGCGcac < 2:221107/149‑1 (MQ=255)
cGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGcaca > 2:613680/1‑149 (MQ=255)
cGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGcaca < 1:5533/149‑1 (MQ=255)
cGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGt > 4:1142090/1‑149 (MQ=255)
gACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTg > 1:1523217/1‑149 (MQ=255)
aCGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGc < 1:1440177/149‑1 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc > 2:856864/1‑89 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCggg > 2:511870/1‑127 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaa > 1:677517/1‑149 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaa > 1:1212271/1‑149 (MQ=255)
aaTCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAg < 4:355045/136‑1 (MQ=255)
aaTCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaaggcaa < 1:455917/149‑1 (MQ=255)
tCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGcac > 3:924922/1‑130 (MQ=255)
aGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGaa > 3:855733/1‑149 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATTGCCCCAGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGAGGCAAGGCAACGAAg > 2:547314/1‑149 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgcg > 2:1066008/1‑88 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaag < 2:841143/140‑1 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg < 2:694711/149‑1 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg < 4:1587559/149‑1 (MQ=255)
cgcAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGc < 1:1037015/100‑1 (MQ=255)
cgcAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGc > 2:1037015/1‑100 (MQ=255)
cgcAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCa < 3:176694/149‑1 (MQ=255)
aaGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg < 3:534226/142‑1 (MQ=255)
ggCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTccac > 2:673521/1‑91 (MQ=255)
aGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAgc > 4:1013023/1‑149 (MQ=255)
gTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg > 1:1602981/1‑136 (MQ=255)
gTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg < 2:1602981/136‑1 (MQ=255)
ttCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAgcgc > 4:667172/1‑149 (MQ=255)
ttCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAgcgc < 2:1212271/149‑1 (MQ=255)
gggAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCgcggc > 1:1051587/1‑149 (MQ=255)
gAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGaa > 3:1043009/1‑129 (MQ=255)
gAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGt > 2:1553588/1‑149 (MQ=255)
gAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGt > 2:345605/1‑149 (MQ=255)
aGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTa < 4:1722690/149‑1 (MQ=255)
aGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCACACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTa < 3:1221795/149‑1 (MQ=255)
gATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTAc < 2:1523217/149‑1 (MQ=255)
aTGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTCAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTAcc > 4:127750/1‑149 (MQ=255)
gTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCaa > 3:1276200/1‑149 (MQ=255)
ttAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaag > 4:246354/1‑114 (MQ=255)
ttAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaag > 1:522499/1‑114 (MQ=255)
ttAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg < 3:485958/123‑1 (MQ=255)
aataaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAATCg > 1:1475166/1‑149 (MQ=255)
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ACACGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAATCG > NC_000913/3703987‑3704283
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
