Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F178 I0 R1 41 49.4 1100758 95.6% 1052324 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC USA300TCH1516_ALE 1,747,374 Δ3 bp 100% coding (2073‑2075/2280 nt) USA300HOU_RS08710 ← Heme uptake protein MmpL11

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1747374 1747376 3 37 [0] [1] 38 USA300HOU_RS08710 Heme uptake protein MmpL11

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1747377 =0 (0.000)37 (0.870) 30/242 NT 100% coding (2072/2280 nt) USA300HOU_RS08710 Heme uptake protein MmpL11
?USA300TCH1516_ALE = 1747373 0 (0.000)coding (2076/2280 nt) USA300HOU_RS08710 Heme uptake protein MmpL11

GATK/CNVnator alignment

N/A