Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F178 I0 R1 41 49.4 1100758 95.6% 1052324 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC USA300TCH1516_ALE 2,501,188 Δ3,014 bp 100% melR_2–ydaG melR_2, ydaG

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 2501188 2504201 3014 53 [1] [1] 54 melR_2–ydaG melR_2,ydaG

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 25011871 (0.020)45 (1.110) 37/230 NT 97.9% intergenic (+1198/‑290) USA300HOU_RS12875/melR_2 hypothetical protein/Melibiose operon regulatory protein
?USA300TCH1516_ALE 2504202 = 1 (0.020)intergenic (+127/‑138) ydaG/USA300HOU_RS12890 General stress protein 26/hypothetical protein

GATK/CNVnator alignment

N/A