Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F178 I1 R1
|
28 |
89.4 |
2015306 |
95.8% |
1930663 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
USA300TCH1516_ALE |
2,501,188 |
Δ3,014 bp |
|
melR_2–ydaG |
melR_2, ydaG |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
USA300TCH1516_ALE |
2501188 |
2504201 |
3014 |
94 [0] |
[0] 96 |
melR_2–ydaG |
melR_2,ydaG |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
USA300TCH1516_ALE |
= 2501187 | 0 (0.000) | 91 (1.140) |
62/250 |
0.1 |
100% |
intergenic (+1198/‑290) |
USA300HOU_RS12875/melR_2 |
hypothetical protein/Melibiose operon regulatory protein |
| ? | USA300TCH1516_ALE |
2504202 = |
0 (0.000) | intergenic (+127/‑138) |
ydaG/USA300HOU_RS12890 |
General stress protein 26/hypothetical protein |
GATK/CNVnator alignment
N/A
