Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F109 I1 R1
|
31 |
90.0 |
1985866 |
95.2% |
1890544 |
140.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
USA300TCH1516_ALE |
1,196,508 |
C→A |
S338Y (TCT→TAT) |
ftsZ → |
Cell division protein FtsZ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | USA300TCH1516_ALE | 1,196,508 | 0 | C | A | 99.0%
| 301.2
/ NA
| 97 | S338Y (TCT→TAT) | ftsZ | Cell division protein FtsZ |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (41/54); total (42/55) |
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 101 total aligned reads displayed.
TGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTCTAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGAC > USA300TCH1516_ALE/1196370‑1196645
|
tGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTtata > 2:796322/1‑141 (MQ=255)
tGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTtata > 2:586509/1‑141 (MQ=255)
tGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTtata > 1:390707/1‑141 (MQ=255)
tGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGAAAATACTtata > 1:461941/1‑141 (MQ=255)
aTTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGc > 1:882481/1‑141 (MQ=255)
tttCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACCTGGTAGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCaa < 1:678478/141‑1 (MQ=255)
tttCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCaa < 1:129908/141‑1 (MQ=255)
cGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGTTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAACACTGGAGTCGGAACAAACGAAAATACTTATAGCAATGc > 2:628334/1‑141 (MQ=255)
aCAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGTGTAAATACTTATAGCAATGCAACt < 1:721916/141‑1 (MQ=255)
aCAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACt < 1:945475/141‑1 (MQ=255)
aGTTATTAATCCTAAATTACAAGATGCGATCGCTGCAACAGTTATTCCAACCGGTTTTGATGACACCCAAACATCACATGCTCGCCTGACATGTATCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTc < 1:231957/141‑1 (MQ=255)
gTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCt > 1:669778/1‑141 (MQ=255)
ttattaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTa > 2:879232/1‑141 (MQ=255)
tattaATCCTGAATTAGAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTaa < 1:296653/141‑1 (MQ=255)
tattaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTTCAACTGGTTTTGATGACAAACCAACATCACATGGGCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTaa < 2:277392/141‑1 (MQ=255)
tattaATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTaa < 1:117677/141‑1 (MQ=255)
aaTCCTGATTTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCAGATGGTTGTAAATCTGGTATCACTGGAATCGGATCAAGAGTAAATAATTATAGCAAGTCAACTTCTAAAGAt > 2:313845/1‑141 (MQ=255)
aaTCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGAt > 1:874265/1‑141 (MQ=255)
tCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGa < 1:804152/141‑1 (MQ=255)
tCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGa > 2:898256/1‑141 (MQ=255)
cTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCACTGCAACTTCTAAAGATGAAt > 2:230845/1‑141 (MQ=255)
cTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAAt < 1:702088/141‑1 (MQ=255)
tGAATTACAATATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATAACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGTATTCTGCACAAGCGTAAATACCTATAGCAATGCAACTTCTAAAGATGAATc < 1:166289/141‑1 (MQ=255)
actACAAGATGAGATTGTTGTAACAATGATTGCAACTGGTTTTGATGACCAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGCACAAGCGTAAATACTTATAGCAATGCAACTTATAAAGATGAATCagt < 2:855762/139‑3 (MQ=255)
aTTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCAtt < 2:93543/141‑1 (MQ=255)
ttACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACAAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATAATTc > 1:58535/1‑141 (MQ=255)
tACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCa > 1:453163/1‑141 (MQ=255)
tACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAAAAACCATCAAATGGTCGTAAATCTGGTAGAACTAGATTCGGACCAAGCGTAATTACTTAAAGCAAGGCAACTTCGAAAGATGAATCATTcc > 2:192493/1‑140 (MQ=255)
aCAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCAc < 2:335644/141‑1 (MQ=255)
aCAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAACCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCAc < 2:399992/141‑1 (MQ=255)
aCAAGATGAGATTGTTGTAACAGTTATTGCAACTGGCTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCAc < 1:329462/141‑1 (MQ=255)
aGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGCAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCACTCACTTc > 2:837309/1‑141 (MQ=255)
gATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑a > 1:883429/1‑141 (MQ=255)
tGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGCATCCTTCCCTTC‑aaa > 2:330313/1‑141 (MQ=255)
gagaTTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAAt < 2:182529/141‑1 (MQ=255)
caTTGTTGGAACATTTATTGCAACTGGTTTGGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACCTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATtc < 2:648362/140‑1 (MQ=255)
gttggtgGAACAGTTATTGGAACTGTGTGTGATGACAAACCAACAGCACATGGTCGTATAGCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑ATATtca < 2:336274/140‑1 (MQ=255)
ttgttgTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATtcat > 1:306420/1‑141 (MQ=255)
aCAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGca > 2:55433/1‑141 (MQ=255)
ttATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAg > 1:454011/1‑141 (MQ=255)
ttATTGCAACTGGTTTTGAAGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAg < 1:841503/141‑1 (MQ=255)
ttGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCaa > 1:230298/1‑141 (MQ=255)
ttGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCaa > 1:932022/1‑141 (MQ=255)
gCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACt > 2:889022/1‑141 (MQ=255)
aCTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGAt > 1:90512/1‑141 (MQ=255)
aCTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGCAAATAATTATAGCAATGCGACTTCTAAAGATTAATCATTGACTTC‑AAATTCATCAAATGCACAAGCAACTGAt > 2:233057/1‑141 (MQ=255)
ggTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATGCATCAAATGCACAAGCAACTGATAgt < 2:195463/141‑1 (MQ=255)
gTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAGTCATTCCCTTC‑AAATTCATCAAATGCACAAGCAACTGATAgtt > 1:181887/1‑140 (MQ=255)
gTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAgtg > 1:23292/1‑141 (MQ=255)
gTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAgtg < 1:793438/141‑1 (MQ=255)
gTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAgtg < 2:911651/141‑1 (MQ=255)
gTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAgtg > 1:114810/1‑141 (MQ=255)
tgatgaCACACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAACACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAg < 2:909504/141‑1 (MQ=255)
caCAACCCAACATCACAGGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGaa < 1:170025/140‑1 (MQ=255)
aCAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGaaa < 2:882481/141‑1 (MQ=255)
aCAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGaaa > 1:454221/1‑141 (MQ=255)
aCAAACCAACATCACATGGTCGTAAATCTGGTAGCAACGGCTTCGAACCAACCGCAAATACTTCTAGCACACCAGTTTACAACCCTGAAGCATGCACGTC‑GATTGCATTAAATGCACAATTAACTGATAGTGTAAGTGaaa > 2:574382/1‑141 (MQ=255)
aCAAACCAAAATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGAAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATATTGTAATTTaaa > 2:259830/1‑141 (MQ=255)
cAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAg < 1:898256/141‑1 (MQ=255)
aaaaCCAACATCACATGGGCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAg < 2:58535/140‑1 (MQ=255)
aaCCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTACGTGAAAGaa < 2:195866/141‑1 (MQ=255)
ccAACATCACATGGTCGTAAATCTTGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAaca < 1:81536/141‑1 (MQ=255)
ccAACATCACATGGTCGCAAAGAAGGAATCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAaca > 1:982206/1‑141 (MQ=255)
aCATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAATCAACTGATAGTGTAAGTGAAAGAAcacaa > 2:460169/1‑140 (MQ=255)
aCATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACAt > 2:336585/1‑141 (MQ=255)
aTCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATAc < 2:46332/141‑1 (MQ=255)
acaTGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATaaaaa > 2:430153/1‑140 (MQ=255)
acaTGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAAc > 2:529595/1‑141 (MQ=255)
acaTGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAAc < 1:758242/141‑1 (MQ=255)
aTGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTa < 1:392181/141‑1 (MQ=255)
ggTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTaaa > 1:935577/1‑141 (MQ=255)
cGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAaagaa < 1:879232/141‑1 (MQ=255)
gTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACTCATACAACTAaagaag < 1:586509/141‑1 (MQ=255)
gTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAaagaag < 1:796322/141‑1 (MQ=255)
aTCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAgatga < 2:164783/141‑1 (MQ=255)
aTCTGGTAGCACTGGATTCCGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAgatga < 1:79349/141‑1 (MQ=255)
tgttAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAAAAGATGaaat > 2:499340/4‑141 (MQ=255)
tGGTAGCACTGGATTCGGAACCAGCGTAACGCCTTTTCGAGCTGCTTTTCCCGAAGAAGGATCACTTTCTGG‑AAATTCATTAAAGGCACAAGCTGCGGGGAGTGTAGGTGGAAGAACACATACAACTAAAGAAGATGatat < 2:330812/141‑1 (MQ=255)
tGGTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGatat < 2:724768/141‑1 (MQ=255)
ggTAGCACTGGAGTCGGAACAAGCGTCAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATAtt < 2:609726/141‑1 (MQ=255)
gTAGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTc > 2:362962/1‑141 (MQ=255)
aGCACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCt > 2:295322/1‑141 (MQ=255)
cACTGGATTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAg < 1:326657/141‑1 (MQ=255)
aTTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTACGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCAt > 1:923797/1‑141 (MQ=255)
aTTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCAt < 1:151197/141‑1 (MQ=255)
aTTCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCAt < 1:553421/141‑1 (MQ=255)
tCGTAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTa < 1:687809/141‑1 (MQ=255)
tCGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTa < 1:242485/141‑1 (MQ=255)
cGGAACAAGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAg < 1:336585/141‑1 (MQ=255)
aaGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTCAAAAATCA‑AAAGTGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATag < 1:469880/141‑1 (MQ=255)
aaGCGTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATag < 1:795202/141‑1 (MQ=255)
gCGTAAATACTTATAGCAATGCAACGTCTAAAGATGAATCATTCACTTC‑AAATTCAGCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATagag < 2:599010/141‑1 (MQ=255)
gTAAATACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATAAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGagaa > 2:597889/1‑141 (MQ=255)
aaaTACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGagaaga < 2:263353/141‑1 (MQ=255)
tACTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATCCAACTAAAGAAGATGATATTTCTAGCTTCATTAGAAATAGAGaagaaag > 1:80690/1‑141 (MQ=255)
tACTTATAGCAATGCAACTACTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGaagaaag > 1:543044/1‑141 (MQ=255)
ccTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGaagaaaga < 2:537226/140‑1 (MQ=255)
aCTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGaagaaaga < 1:13306/141‑1 (MQ=255)
cTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGAc < 1:889022/141‑1 (MQ=255)
cTTATAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGAc < 1:321925/141‑1 (MQ=255)
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TGATTTTCGGTACAGTTATTAATCCTGAATTACAAGATGAGATTGTTGTAACAGTTATTGCAACTGGTTTTGATGACAAACCAACATCACATGGTCGTAAATCTGGTAGCACTGGATTCGGAACAAGCGTAAATACTTCTAGCAATGCAACTTCTAAAGATGAATCATTCACTTC‑AAATTCATCAAATGCACAAGCAACTGATAGTGTAAGTGAAAGAACACATACAACTAAAGAAGATGATATTCCTAGCTTCATTAGAAATAGAGAAGAAAGAC > USA300TCH1516_ALE/1196370‑1196645
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
