Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,872,608 |
T→C |
F170F (TTT→TTC) |
yeaI → |
predicted diguanylate cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,872,608 | 0 | T | C | 100.0%
| 128.3
/ NA
| 69 | F170F (TTT→TTC) | yeaI | predicted diguanylate cyclase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/69); total (0/69) |
CTATTTTCTATATTTTCCGCCAACTCAGTTTTATTTGTTTA > W3110S.gb/1872577‑1872617
|
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGttca < 1:53672/41‑3 (MQ=38)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:63403/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:69974/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:67344/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:67291/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:66926/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:66743/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:66690/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:65936/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:64300/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:70075/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:60637/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:60239/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:56325/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:53910/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:52812/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:52735/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:79247/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:87603/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:85525/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:84774/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:82706/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:80890/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:80086/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:79891/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:79733/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:45915/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:77567/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:76241/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:75721/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:74436/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:74262/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:74045/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:72489/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:18722/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:26236/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:24489/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:23621/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:22048/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:2175/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:21503/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:20610/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:20553/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:2745/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:17279/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:1592/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:15385/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:13713/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:13343/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:13096/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:12395/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:12357/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:27900/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:31630/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:33012/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:33015/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:33779/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:35294/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:36913/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:1227/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:38905/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:39101/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:39772/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:41376/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:43415/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:43757/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:44146/41‑1 (MQ=255)
ctattttctatATTTTCCGCCAACTCAGTTTCATTTGATTa < 1:37478/41‑1 (MQ=38)
tattttctatATTTTCCGCCAACTCAGTTTCATTTGTTTa < 1:48266/40‑1 (MQ=255)
|
CTATTTTCTATATTTTCCGCCAACTCAGTTTTATTTGTTTA > W3110S.gb/1872577‑1872617
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
