Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F21 I0 R1
|
1009 |
73.8 |
4146436 |
87.4% |
3623985 |
60.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,833,578 |
T→C |
27.5% |
L107L (CTT→CTC) |
ygbL → |
predicted class II aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,833,578 | 0 | T | C | 27.5%
| 143.0
/ 68.1
| 91 | L107L (CTT→CTC) | ygbL | predicted class II aldolase |
| Reads supporting (aligned to +/- strand): ref base T (37/29); new base C (14/11); total (51/40) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
TGGCGCTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGCGGATG > minE/1833508‑1833647
|
tGGCGCTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCtt > 1:1254659/1‑71 (MQ=255)
tGGCGCTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCtt > 1:1844115/1‑71 (MQ=255)
gcgcTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:1093286/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTc > 1:382249/1‑71 (MQ=255)
tATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTc > 1:2265353/1‑65 (MQ=255)
aTCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTcctgcctg > 1:847138/1‑71 (MQ=255)
aTCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTcctgcct > 1:2314087/1‑70 (MQ=255)
aTCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTcctgcc > 1:1862933/1‑69 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCtt < 1:2926064/61‑1 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCtt < 1:3196009/61‑1 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTcctgcctg > 1:3738941/1‑70 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTcctgcctg > 1:2510546/1‑70 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTcctgcctg > 1:3811161/1‑70 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTcctgcctg > 1:1482314/1‑70 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgcctgc < 1:3689249/71‑1 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTcctgcctg < 1:3466833/70‑1 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTcctgcctg > 1:882178/1‑70 (MQ=255)
tCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCctgcctgc < 1:1627295/71‑1 (MQ=255)
ccGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgcctgc < 1:2107324/70‑1 (MQ=255)
cGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgcctgc > 1:4106460/1‑70 (MQ=255)
cGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCctgcctgc > 1:2858567/1‑70 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgcctgc > 1:2651392/1‑69 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgcctgc > 1:1064149/1‑69 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgcctgc > 1:1068901/1‑69 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgcctgc > 1:1569028/1‑69 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCctgactgc > 1:1858067/1‑69 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCa < 1:827684/70‑1 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCa < 1:164544/70‑1 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCa < 1:2252597/70‑1 (MQ=255)
gCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCctgcctgc > 1:2812248/1‑69 (MQ=255)
caacaaTCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAg < 1:515872/71‑1 (MQ=255)
aacaaTCCGCGCTGTAAAGCGGTGGTGCGTTTGCACAGCACATGGTCGACGGCGCTTTcctg < 1:3099364/62‑1 (MQ=255)
aacaaTCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAgg > 1:4099178/1‑71 (MQ=255)
acaaTCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAggg > 1:542809/1‑71 (MQ=255)
caaTCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGc < 1:2405649/71‑1 (MQ=255)
aaTCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:3334784/1‑71 (MQ=255)
tCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTg > 1:697701/1‑70 (MQ=255)
ccGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGa > 1:1610906/1‑71 (MQ=255)
ccGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCaa > 1:1369216/1‑63 (MQ=255)
cgcgCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGa > 1:1637721/1‑70 (MQ=255)
cgcgCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGa > 1:203636/1‑70 (MQ=255)
gcgcTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGAca < 1:3789149/71‑1 (MQ=255)
cgcTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGAcag < 1:3436958/71‑1 (MQ=255)
cgcTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGAcag < 1:1484881/71‑1 (MQ=255)
gcTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGAcag > 1:3182507/1‑70 (MQ=255)
cTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGAcagca < 1:318368/71‑1 (MQ=255)
tAAAGCGGTGGTGCATATGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACagcagc < 1:443236/70‑1 (MQ=255)
aaGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:3364582/1‑58 (MQ=255)
aaGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAAc < 1:3487136/71‑1 (MQ=255)
aaGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAAc > 1:977812/1‑71 (MQ=255)
aaGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAAc < 1:270370/71‑1 (MQ=255)
aaGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAAc < 1:2569625/71‑1 (MQ=255)
cGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGt < 1:921530/70‑1 (MQ=255)
ggtggtGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGAcagca > 1:905543/1‑62 (MQ=255)
ggtggtGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTa < 1:1062786/71‑1 (MQ=255)
ggtggtGCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTa > 1:890353/1‑71 (MQ=255)
gtggtgCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTAt > 1:1800190/1‑71 (MQ=255)
gtgCATTTGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCg < 1:2103458/71‑1 (MQ=255)
tttGCACAGCACATGGTCGACGGCGCTTTCctgcctgc < 1:770861/38‑1 (MQ=255)
tttGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCa < 1:720834/39‑1 (MQ=255)
tttGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTc < 1:692456/65‑1 (MQ=255)
tttGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTc < 1:1601879/65‑1 (MQ=255)
ttGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:3172163/1‑71 (MQ=255)
tGCACAGCACATGGTCGCCGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:3061128/1‑70 (MQ=255)
tGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:1018078/1‑70 (MQ=255)
tGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:1460131/1‑70 (MQ=255)
tGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:1176226/1‑70 (MQ=255)
tGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:1574463/1‑70 (MQ=255)
tGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:322269/1‑70 (MQ=255)
tGCACAGCACATGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:1268969/1‑70 (MQ=255)
cacagcacaTGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTca < 1:1335614/70‑1 (MQ=255)
acagcacaTGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTcaca < 1:46634/71‑1 (MQ=255)
cagcacaTGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCacac > 1:356154/1‑71 (MQ=255)
cagcacaTGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCacac > 1:2580211/1‑71 (MQ=255)
agcacaTGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCacac > 1:2939550/1‑70 (MQ=255)
agcacaTGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCacac > 1:2047882/1‑70 (MQ=255)
agcacaTGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCacac > 1:1284620/1‑70 (MQ=255)
gcacaTGGTCGACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCa < 1:3792937/71‑1 (MQ=255)
aTGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGa > 1:3920751/1‑36 (MQ=255)
aTGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACg < 1:385052/71‑1 (MQ=255)
aTGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACg < 1:124219/71‑1 (MQ=255)
aTGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACg < 1:3281422/71‑1 (MQ=255)
tGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACg < 1:629159/70‑1 (MQ=255)
tGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGATcac < 1:1631715/62‑1 (MQ=255)
ggTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGtt > 1:328404/1‑58 (MQ=255)
gTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCATCAACGTTATTCGTCCGTTCACACCATACgtg < 1:1773445/70‑1 (MQ=255)
gTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACgtgg > 1:167321/1‑71 (MQ=255)
gTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACgtgg > 1:1907189/1‑71 (MQ=255)
tCGACGGCGCTTTCCTGCCTGCAAGGGCTTGACAGCAGCAACGTTATTCGTCCGTTCACACCATACgtggt < 1:3733885/71‑1 (MQ=255)
tCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACgtggt < 1:3782544/71‑1 (MQ=255)
gACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGa < 1:1399329/71‑1 (MQ=255)
gACGGCGCTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGa > 1:472735/1‑71 (MQ=255)
aCGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCacac < 1:2632401/58‑1 (MQ=255)
aCGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGAt < 1:4112035/71‑1 (MQ=255)
gcTCTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGCGGa < 1:2686474/71‑1 (MQ=255)
cTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGCGGAt > 1:2730982/1‑71 (MQ=255)
tttCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGCGGATg > 1:344739/1‑71 (MQ=255)
tttCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGCGGATg > 1:3259881/1‑71 (MQ=255)
tttCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGAGGATg > 1:3298453/1‑71 (MQ=255)
|
TGGCGCTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGCGGATG > minE/1833508‑1833647
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
