Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I3 R2
|
52 |
92.4 |
4932871 |
87.1% |
4296530 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,582,992 |
T→C |
S81S (TCA→TCG) |
ligA ← |
DNA ligase, NAD(+)‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,582,992 | 0 | T | C | 100.0%
| 202.6
/ NA
| 55 | S81S (TCA→TCG) | ligA | DNA ligase, NAD(+)‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (16/39); total (16/39) |
TTTTTCAGACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTT > minE/1582924‑1583056
|
tttttCAGACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGa < 1:2911037/71‑1 (MQ=255)
ttttCAGACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGa < 1:613552/70‑1 (MQ=255)
tCAGACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAg < 1:2747720/70‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:3098928/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:2905770/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:3819178/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:3798278/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:1856667/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:1947393/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:1973869/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:4176862/71‑1 (MQ=255)
gACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCAtt < 1:2358757/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:3213542/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:3908865/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:3937309/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:434101/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:4640108/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:1838700/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:4840591/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:1449053/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:3278366/71‑1 (MQ=255)
cGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:855040/71‑1 (MQ=255)
ggTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTgg < 1:768032/70‑1 (MQ=255)
ggTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGt < 1:3731969/71‑1 (MQ=255)
ggTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGt < 1:3435736/71‑1 (MQ=255)
ggTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGt < 1:2850268/71‑1 (MQ=255)
ggTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGt < 1:4670592/71‑1 (MQ=255)
ggTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGt < 1:13024/71‑1 (MQ=255)
cGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGTACTTCATGGCg > 1:896827/1‑71 (MQ=255)
cGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGTACTTCATGGCg > 1:947659/1‑71 (MQ=255)
cGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGTACTTCATGGCg > 1:3264954/1‑71 (MQ=255)
cGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGCATTGGTACTTCATGGCg > 1:2147337/1‑71 (MQ=255)
gTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGc < 1:1173936/53‑1 (MQ=255)
gTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGc < 1:1214498/53‑1 (MQ=255)
gTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGc < 1:2431662/53‑1 (MQ=255)
gTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGc < 1:636602/53‑1 (MQ=255)
gTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGc < 1:1364799/53‑1 (MQ=255)
gTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGc < 1:2003723/53‑1 (MQ=255)
gTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGCGACAGc < 1:4647899/53‑1 (MQ=255)
tcttcATCAAAAACGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAgc < 1:1825727/69‑1 (MQ=255)
tcttcATCAAAAACGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAgc < 1:4693749/69‑1 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:1051883/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:3509805/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:1221211/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:659027/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:1696824/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:4777286/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:450151/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:427167/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:4263459/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:4094017/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcgc > 1:3045838/1‑71 (MQ=255)
aaaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAgcg > 1:321032/1‑70 (MQ=255)
aaaaCGTTATCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGcc < 1:3346540/71‑1 (MQ=255)
tCCAGCGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGtt < 1:3274935/70‑1 (MQ=255)
|
TTTTTCAGACGGTCCTGCACACGTTTGTTGAAAGCAAGAAAGCTTTCTTCATCAAAAACGTTATCCAGTGACAGCATTGGTACTTCATGGCGTATCTGGCTGAAAGCCGCCAGCGGCGCAGCGCCTACACGTT > minE/1582924‑1583056
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
