Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I3 R2
|
52 |
92.4 |
4932871 |
87.1% |
4296530 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,695,634 |
G→A |
Q126* (CAG→TAG) |
yfhQ ← |
predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,695,634 | 0 | G | A | 100.0%
| 133.2
/ NA
| 42 | Q126* (CAG→TAG) | yfhQ | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/12); total (30/12) |
GCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTGCAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTATTTG > minE/1695573‑1695696
|
gCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCtt < 1:2935748/70‑1 (MQ=255)
gCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCtt < 1:2377829/70‑1 (MQ=255)
gCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCtt < 1:1953106/70‑1 (MQ=255)
gCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCtt < 1:258037/70‑1 (MQ=255)
gCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCtt < 1:63615/70‑1 (MQ=255)
gCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCtt < 1:1151674/70‑1 (MQ=255)
ccAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCa < 1:2522891/71‑1 (MQ=255)
ccAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCa < 1:650191/71‑1 (MQ=255)
cAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCa < 1:304623/70‑1 (MQ=255)
gAGCTGTATTCCGGGTTAGCCGCAATCGCGAGATGATAATGGCATTTCTACAACTCTTCa < 1:2858006/60‑1 (MQ=255)
ccGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTcg > 1:2819441/1‑71 (MQ=255)
ccGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTcg > 1:2182774/1‑71 (MQ=255)
aGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:4716054/1‑56 (MQ=255)
aGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:4653393/1‑56 (MQ=255)
aGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:407351/1‑56 (MQ=255)
aGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:3656892/1‑56 (MQ=255)
aGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:759741/1‑56 (MQ=255)
aGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:2895433/1‑56 (MQ=255)
aGCCGCAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:1665404/1‑56 (MQ=255)
aGCCACAATCGCGACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGa > 1:148510/1‑56 (MQ=255)
gcgACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAgcgc > 1:1128348/1‑71 (MQ=255)
gcgACATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCAGACGCGCTCGCGACCAAACACCAgcgc > 1:650376/1‑71 (MQ=39)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACAcc > 1:1684507/1‑62 (MQ=255)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCAcc > 1:371165/1‑71 (MQ=255)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCAcc > 1:1009067/1‑71 (MQ=255)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCAcc > 1:4863785/1‑71 (MQ=255)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCAcc > 1:1167241/1‑71 (MQ=255)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCAcc > 1:3487221/1‑71 (MQ=255)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCAcc > 1:3166431/1‑71 (MQ=255)
cATGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCAcc > 1:2190760/1‑71 (MQ=255)
aTGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCg > 1:1292407/1‑71 (MQ=255)
aTGATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCg > 1:507135/1‑71 (MQ=255)
gATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCggg > 1:2332686/1‑71 (MQ=255)
gATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCggg > 1:1782149/1‑71 (MQ=255)
gATAATGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCggg > 1:1166037/1‑71 (MQ=255)
aTGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTa < 1:1387880/70‑1 (MQ=255)
aTGGCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTa < 1:19136/70‑1 (MQ=255)
gaaTTTCTACAACTCTTCATTGGTCAGGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGGATTTg > 1:4414669/3‑71 (MQ=38)
gCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTATTTg > 1:3274310/1‑71 (MQ=255)
gCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTATTTg > 1:4310799/1‑71 (MQ=255)
gCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTATTTg > 1:1563063/1‑71 (MQ=255)
gCATTTCTACAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTATTTg > 1:1914977/1‑71 (MQ=255)
|
GCCAGGTTCAGCGAGCTGTATTCCGGGTTAGCCGCAATCGCGACATGATAATGGCATTTCTGCAACTCTTCATTGGTCAAGCCGACGCGCTCGCGACCAAACACCAGCGCCACCGGGGTATTTG > minE/1695573‑1695696
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
