Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I3 R2
|
52 |
92.4 |
4932871 |
87.1% |
4296530 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,042,482 |
C→T |
M57I (ATG→ATA) |
glgS ← |
predicted glycogen synthesis protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,042,482 | 0 | C | T | 100.0%
| 184.3
/ NA
| 57 | M57I (ATG→ATA) | glgS | predicted glycogen synthesis protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (24/33); total (24/33) |
CAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGCATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCATGT > minE/2042419‑2042546
|
cAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTatcatc < 1:131336/70‑1 (MQ=255)
cAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTatcatc < 1:3824809/70‑1 (MQ=255)
cAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTatcatc < 1:4230698/70‑1 (MQ=255)
cAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTatcatc < 1:4626538/70‑1 (MQ=255)
cacTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGtt > 1:4911698/1‑70 (MQ=255)
acTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGa < 1:1012647/71‑1 (MQ=255)
acTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGa < 1:335586/71‑1 (MQ=255)
acTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGa < 1:3518313/71‑1 (MQ=255)
acTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGa < 1:3837265/71‑1 (MQ=255)
gCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtat > 1:778737/1‑43 (MQ=255)
gCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtat > 1:3688084/1‑43 (MQ=255)
gCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtat > 1:1516692/1‑43 (MQ=255)
cccGTTATATCAGTGCTCTAACTCTAGCTCTCTTGCCTGtatcat < 1:2317692/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4034036/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:2764044/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:2854911/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3905278/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3875743/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:711875/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3801493/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3773975/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3053951/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3328928/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3744444/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3162374/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3577004/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:1689186/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:2501578/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4154218/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4160395/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:420771/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4209828/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:1571859/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4298662/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:440894/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:2056109/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:2055456/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4454767/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4856748/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4769176/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:1811671/45‑1 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:1232877/1‑55 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:3747181/1‑55 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:4130490/1‑55 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:2377633/1‑55 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:248721/1‑55 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:2865501/1‑55 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:3126569/1‑55 (MQ=255)
cccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACaa > 1:3081334/1‑55 (MQ=255)
cccGTTATATCACTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:4719483/45‑1 (MQ=38)
ccGTTATATGAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:3306219/44‑1 (MQ=38)
ccGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:1596992/44‑1 (MQ=255)
cGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGtatcat < 1:416057/43‑1 (MQ=255)
atatCAGTGCTCTAACTGCAGCTATCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCaa < 1:4061823/70‑1 (MQ=255)
atatCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGTaa < 1:555807/70‑1 (MQ=255)
atatCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCaa < 1:3024399/70‑1 (MQ=255)
atatCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCaa < 1:4871358/70‑1 (MQ=255)
atatCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCaa < 1:2246174/70‑1 (MQ=255)
atatCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGGGCGCaa < 1:2295/70‑1 (MQ=255)
atCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAAc > 1:2297578/1‑71 (MQ=255)
atCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAAc > 1:2791615/1‑71 (MQ=255)
atCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAAc > 1:922478/1‑71 (MQ=255)
tCAGTGCTCTAACTCCAGCTCTCTTGCCTGTatcatc < 1:837587/37‑1 (MQ=255)
tCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAAcc < 1:1447802/71‑1 (MQ=255)
tCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAAcc < 1:3566835/71‑1 (MQ=255)
tCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAAcc < 1:3864233/71‑1 (MQ=255)
tCAGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAAcc < 1:382251/71‑1 (MQ=255)
aGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAAt > 1:2182459/1‑45 (MQ=255)
aGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATa > 1:2047825/1‑46 (MQ=255)
aGTGCTCTAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATa > 1:2938660/1‑46 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:2359699/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:597473/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:3798463/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:2793798/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:48211/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:1823399/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:470802/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:796507/69‑1 (MQ=255)
tAACTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCt < 1:2878923/69‑1 (MQ=255)
aCTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCTAAACCAGGTTCTATGt > 1:1293070/1‑71 (MQ=255)
aCTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGt > 1:4814288/1‑71 (MQ=255)
aCTCCAGCTCTCTTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGt > 1:738412/1‑71 (MQ=255)
ctctTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATc > 1:3230490/1‑70 (MQ=255)
ctctTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATc > 1:2968758/1‑70 (MQ=255)
tctTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATcc > 1:4279470/1‑70 (MQ=255)
tctTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCa > 1:1653580/1‑71 (MQ=255)
tctTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCa > 1:3111964/1‑71 (MQ=255)
tctTGCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCa > 1:2889582/1‑71 (MQ=255)
gCCTGTATCATCTGTTGACAATACCAGGCATAACGTGGGCAAAACCAGGTTCTATGTTCTTCATCCATGt < 1:3617414/70‑1 (MQ=255)
gCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCATGt < 1:68582/70‑1 (MQ=255)
gCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCATGt < 1:1880804/70‑1 (MQ=255)
gCCTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCATGt < 1:94705/70‑1 (MQ=255)
ccTGTATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCATGt < 1:88825/69‑1 (MQ=255)
|
CAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTCTAACTCCAGCTCTCTTGCCTGCATCATCTGTTGACAATACCAGGCATAACGTGCGCAAAACCAGGTTCTATGTTCTTCATCCATGT > minE/2042419‑2042546
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
