Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F21 I0 R1	61	33.6	2680365	96.0%	2573150	61.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	W3110S.gb	2,058,034	C→T	70.7%	G279G (GGC→GGT)	amn →	AMP nucleosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	W3110S.gb	2,058,034	0	C	T	70.7%	54.1 / 31.9	41	G279G (GGC→GGT)	amn	AMP nucleosidase
Reads supporting (aligned to +/- strand): ref base C (7/5); new base T (18/11); total (25/16)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.54e-01

AACATCAGATGCCAGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCTACGCCCGGATGTCTGGTT  >  W3110S.gb/2057967‑2058099

aaCATCAGATGCCAGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGtgtg                                                                <  1:1607760/71‑1 (MQ=255)

     cAGATGCCAGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGAcc                                                           >  1:2148362/1‑71 (MQ=255)

     cAGATGCCAGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGAcc                                                           >  1:1678502/1‑71 (MQ=255)

     cAGATGCCAGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGAcc                                                           >  1:1367901/1‑71 (MQ=255)

             aGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGACCGTCaaa                                                     <  1:2047118/69‑1 (MQ=255)

             aGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGACCGTCaaa                                                     <  1:1193998/69‑1 (MQ=255)

             aGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGACCGTCaaa                                                     <  1:2534727/69‑1 (MQ=255)

                 tGGCATTTAATTACCGCCGATGGTCAGGGTATTACTATGGTGAATATTGGTGTGGGACCGTCAAATGCTaa                                               <  1:2535045/71‑1 (MQ=255)

                   gCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGACCGTCAAATGCTaaaa                                             >  1:2623243/1‑71 (MQ=255)

                     aTTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTaaaa                                             >  1:983005/1‑69 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCa                                                       >  1:2013821/1‑56 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATc                                        >  1:2671489/1‑71 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATc                                        >  1:329427/1‑71 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATc                                        >  1:564006/1‑71 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATc                                        >  1:619217/1‑71 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATc                                        >  1:1104349/1‑71 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATc                                        >  1:2025731/1‑71 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATc                                        >  1:1294745/1‑71 (MQ=255)

                        tAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTggg                                                              >  1:2086020/1‑49 (MQ=255)

                                          aGGGTATTACTCTGGTGAATATTGGCGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTg                      >  1:44142/1‑71 (MQ=255)

                                            ggTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCt                    <  1:622250/71‑1 (MQ=255)

                                            ggTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCt                    <  1:1645028/71‑1 (MQ=255)

                                             gTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCTa                   >  1:12891/1‑71 (MQ=255)

                                             gTATTACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCTa                   >  1:313518/1‑71 (MQ=255)

                                                ttACTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAAcc                                           <  1:2033430/44‑1 (MQ=255)

                                                ttACTCTGGTGAATATTGGCGTGGGACCGTCAAATGCTAAAACCATCTGCGatcat                               <  1:1756812/56‑1 (MQ=255)

                                                ttACTCTGGTGAATATTGGCGTGGGACCGTCAAATGCTAAAACCATCTGCGatcat                               <  1:340678/56‑1 (MQ=255)

                                                  aCTCTGGTGAATATTGGTGTGGGACCGTCAAATGCTAAAACCAt                                         >  1:1189423/1‑44 (MQ=255)

                                                      tGGTGAATATTGGTGTGGGACCGTCAAATGCTaaaa                                             >  1:1222384/1‑36 (MQ=255)

                                                           aaTATTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCTACGCCCGGATGTCt      >  1:106825/1‑70 (MQ=255)

                                                             tatTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCg                                    <  1:2641044/38‑1 (MQ=255)

                                                             tatTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCg                                    <  1:1465868/38‑1 (MQ=255)

                                                             tatTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCg                                    <  1:2294926/38‑1 (MQ=255)

                                                             tatTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCg                                    <  1:2169876/38‑1 (MQ=255)

                                                             tatTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCg                                    <  1:46761/38‑1 (MQ=255)

                                                             tatTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCg                                    <  1:2117742/38‑1 (MQ=255)

                                                             tatTGGTGTGGGACCGTCAAATGCTAAAACCATCTGCg                                    <  1:798750/38‑1 (MQ=255)

                                                             tatTGGCGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCTACGCCCGGATGTCTGGt   >  1:1699144/1‑71 (MQ=255)

                                                               ttGGTGTGGGACCGTCAAATGTTAAAACCATCTGCGATCATCTGGCAg                        >  1:21479/1‑48 (MQ=255)

                                                               ttGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAg                        >  1:587151/1‑48 (MQ=255)

                                                               ttGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAg                        >  1:1923237/1‑48 (MQ=255)

                                                               ttGGTGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCTACGCCCGGATGTCTGGtt  >  1:1978010/1‑70 (MQ=255)

AACATCAGATGCCAGCATGGCATTTAATTACCGCCGATGGTCAGGGTATTACTCTGGTGAATATTGGCGTGGGACCGTCAAATGCTAAAACCATCTGCGATCATCTGGCAGTGCTACGCCCGGATGTCTGGTT  >  W3110S.gb/2057967‑2058099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A