Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
847,104 |
A→G |
R146R (CGT→CGC) |
glnP ← |
glutamine transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 847,104 | 0 | A | G | 100.0%
| 96.6
/ NA
| 27 | R146R (CGT→CGC) | glnP | glutamine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/0); total (27/0) |
TGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGA > W3110S.gb/847073‑847137
|
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGcc > 1:675504/1‑44 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGc > 1:1911683/1‑43 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1947016/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:818638/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:763455/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:446154/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:440687/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:412470/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:258798/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:2488076/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:2410071/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:2317611/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:2110282/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:2034995/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1977224/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1874427/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:178337/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1768386/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1678504/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1597207/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1566437/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1519540/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:147059/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1455760/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:1439506/1‑65 (MQ=255)
tgatCCACTGGTTACCCAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAGCGa > 1:130290/1‑65 (MQ=255)
tgatCCACTGGTTACACAGCGGCGGCAGCATGCGACGCAGTGCCAGCGGTAAAATGACGTAg > 1:1252090/1‑62 (MQ=255)
|
TGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGA > W3110S.gb/847073‑847137
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
