Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R1
|
178 |
99.0 |
1887089 |
95.3% |
1798395 |
63.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,460,454 |
(A)6→7 |
intergenic (‑163/‑13) |
fbp ← / → mpl |
fructose‑1,6‑bisphosphatase I/UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,460,448 | 1 | . | A | 100.0%
| 262.2
/ NA
| 71 | intergenic (‑157/‑19) | fbp/mpl | fructose‑1,6‑bisphosphatase I/UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (71/0); total (71/0) |
TAAAATGAGCGGCAGATT‑AAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTTGT > W3110S.gb/4460431‑4460493
|
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTa > 1:292672/1‑38 (MQ=37)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCa > 1:516295/1‑44 (MQ=38)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:289126/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:429609/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:419395/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:400654/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:360549/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:358987/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:351257/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:483682/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:263592/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:261937/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:236169/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:218629/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:211624/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:195175/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:187239/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1047373/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:687215/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:949841/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:92627/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:923427/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:800111/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:795143/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:781429/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:764377/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:733024/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:439821/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:675333/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:638510/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:581921/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:56938/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:534186/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:523882/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1872012/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1268433/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:182791/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1421252/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1408154/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1368480/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1363353/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1349969/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1281284/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1281178/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1421315/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1207599/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1188703/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1143144/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1138881/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1133032/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1091522/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1087523/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:107139/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1609133/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1765418/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1727439/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1724458/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1708009/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1677619/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1655848/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1650773/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1425231/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1464199/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1452262/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1450945/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1442727/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1442275/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:143588/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtgt > 1:1430043/1‑64 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTtg > 1:808858/1‑63 (MQ=255)
tAAAATGAGCGGCAGATTAAAAAAAGGATAGTGACGTATGCACATTCATATTTTAGGAATTtgt > 1:292223/1‑64 (MQ=255)
|
TAAAATGAGCGGCAGATT‑AAAAAAGGATAGTGACGTATGCGCATTCATATTTTAGGAATTTGT > W3110S.gb/4460431‑4460493
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
