Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,103,846 |
T→C |
Y5H (TAC→CAC) |
ompR → |
DNA‑binding response regulator in two‑component regulatory system with EnvZ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,103,846 | 0 | T | C | 100.0%
| 535.3
/ NA
| 141 | Y5H (TAC→CAC) | ompR | DNA‑binding response regulator in two‑component regulatory system with EnvZ |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (82/59); total (82/59) |
Only 100 of 141 total aligned reads displayed.
CTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTAT > W3110S.gb/4103798‑4103902
|
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGCGAACCACAAGATTCtggtgg > 1:1769583/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:765238/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:1729887/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:171063/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:1786194/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:1801803/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:1631715/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:1981573/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:2014838/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:204647/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:2113863/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:1285913/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:2126830/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:260071/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:272314/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCtggtgg > 1:344294/1‑64 (MQ=255)
cTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATACtggtgg > 1:348707/1‑64 (MQ=255)
aaTTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2264368/64‑1 (MQ=255)
aaTTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2061309/64‑1 (MQ=255)
aaTTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:472110/64‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:1763458/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:1012025/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:597618/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:569085/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:564279/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:1894935/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2027589/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2030683/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2058217/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2526209/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2421072/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:1006388/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:105323/40‑1 (MQ=255)
caaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:151825/40‑1 (MQ=255)
aaacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:982369/39‑1 (MQ=255)
aacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:2492986/38‑1 (MQ=255)
aacaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATg < 1:1149478/38‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGctgctgta < 1:174139/65‑3 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1755091/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:120847/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:311646/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:84173/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:31530/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:770109/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1304126/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1418513/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1424081/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:693265/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1688607/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:102838/65‑1 (MQ=255)
acaaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1954315/65‑1 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGCCGACATGCGCCTGCGTGCGCTGCTGGa > 1:1280314/1‑64 (MQ=39)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTgcgc > 1:182974/1‑57 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:378520/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:358114/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:354088/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1108119/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:568534/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:590608/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1015658/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:60273/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1136444/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:426821/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:813663/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:646352/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2525781/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:850380/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1967714/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1628781/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1665886/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1877945/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2003999/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1877412/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1313876/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:1290672/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2129296/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2189170/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2228565/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:888813/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2306529/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2320036/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:243790/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2466264/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGaa > 1:2496841/1‑65 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1195158/64‑1 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:504745/64‑1 (MQ=255)
caaTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGa < 1:1084168/64‑1 (MQ=255)
caaTGAAAGAGAACCACAAGATTCTGGTGGTCGATgacga > 1:1262744/1‑40 (MQ=38)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAAc > 1:866641/1‑64 (MQ=255)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAAc > 1:985951/1‑64 (MQ=255)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAAc > 1:444015/1‑64 (MQ=255)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAAc > 1:1117974/1‑64 (MQ=255)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAAc > 1:2529608/1‑64 (MQ=255)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAAc > 1:226632/1‑64 (MQ=255)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAAc > 1:1529744/1‑64 (MQ=255)
aTGCAAGAGAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTCCGTGCGCTGCTgg > 1:1694097/1‑61 (MQ=255)
agagAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACg > 1:1874558/1‑60 (MQ=255)
agagAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTAt > 1:384206/1‑64 (MQ=255)
agagAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTAt > 1:2161080/1‑64 (MQ=255)
agagAACCACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTAt > 1:1750861/1‑64 (MQ=255)
|
CTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTAT > W3110S.gb/4103798‑4103902
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
