Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R1
|
176 |
0.0 |
1562086 |
58.2% |
909134 |
66.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
730,183 |
G→T |
A87S (GCC→TCC) |
fabG → |
3‑oxoacyl‑[acyl‑carrier‑protein] reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 730,183 | 0 | G | T | 100.0%
| 43.8
/ NA
| 13 | A87S (GCC→TCC) | fabG | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (13/0); total (13/0) |
CCTGGTCAATAATGCCGGTATCACTCGTGATAACCTGTTAATGCGAA > minE/730170‑730216
|
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATga > 1:1536817/1‑43 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGc > 1:822150/1‑44 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1040831/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1081547/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1113287/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1122808/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1236302/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1305315/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1337425/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:1466180/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:259658/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:343113/1‑47 (MQ=255)
ccTGGTCAATAATTCCGGTATCACTCGTGATAACCTGTTAATGCGaa > 1:614355/1‑47 (MQ=255)
|
CCTGGTCAATAATGCCGGTATCACTCGTGATAACCTGTTAATGCGAA > minE/730170‑730216
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
