Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I3 R1 283 58.3 1819865 98.8% 1798026 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,416,884 G→A G618S (GGC→AGC)  acrF → multidrug efflux system protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,416,8840GA100.0% 247.8 / NA 65G618S (GGC→AGC) acrFmultidrug efflux system protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (35/30);  total (35/30)

GGTGTCTTTCTGACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCGGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGTTTTGTCATTCCATT  >  NC_000913/3416737‑3417026
                                                                                                                                                   |                                                                                                                                              
ggTGTCTTTCTGACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGcc                                                                                                                                             >  2:588263/1‑151 (MQ=255)
 gtgtCTTTCTGACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCa                                                                                                                                            <  1:306862/151‑1 (MQ=255)
  tgtCTTTCTGACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCa                                                                                                                                            <  1:54609/150‑1 (MQ=255)
  tgtCTTTCTGACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCa                                                                                                                                            <  1:283690/150‑1 (MQ=255)
         cTGACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACaa                                                                                                                                     >  2:807674/1‑150 (MQ=255)
           gACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAAc                                                                                                                                  <  2:85921/151‑1 (MQ=255)
              cATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGcc                                                                                                                               >  2:159619/1‑151 (MQ=255)
                tGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCgg                                                                                                                             >  2:296482/1‑151 (MQ=255)
                         tACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCt                                                                                                                     <  2:731262/150‑1 (MQ=255)
                          aCCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTc                                                                                                                   <  1:119501/151‑1 (MQ=255)
                             cGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTc                                                                                                                <  2:819921/151‑1 (MQ=255)
                              gCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTc                                                                                                                >  2:692689/1‑150 (MQ=255)
                                tGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGt                                                                                                             >  2:135564/1‑151 (MQ=255)
                                tGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGt                                                                                                             >  1:46024/1‑151 (MQ=255)
                                  gcgcGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCt                                                                                                           <  1:834646/151‑1 (MQ=255)
                                  gcgcGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCt                                                                                                           <  1:469510/151‑1 (MQ=255)
                                   cgcgACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTg                                                                                                          >  1:195304/1‑151 (MQ=255)
                                      gACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGaa                                                                                                        >  2:606604/1‑150 (MQ=255)
                                           aaGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGACCGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAAcc                                                                                                     >  2:615875/1‑148 (MQ=255)
                                             gagCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTggg                                                                                                >  1:868911/1‑151 (MQ=255)
                                              agCGGACGCAAACAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTggg                                                                                                >  2:455875/1‑150 (MQ=255)
                                                cGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGa                                                                                               >  1:95954/1‑149 (MQ=255)
                                                 ggACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGa                                                                                               >  1:206502/1‑148 (MQ=255)
                                                 ggACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAaga                                                                                            <  1:509551/151‑1 (MQ=255)
                                                 ggACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAaga                                                                                            <  2:422922/151‑1 (MQ=255)
                                                    cGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCg                                                                                         <  2:559502/151‑1 (MQ=255)
                                                    cGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCg                                                                                         >  1:628720/1‑151 (MQ=255)
                                                     gCAAAAAGTGTTGGATCAAGATACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCg                                                                                         >  2:483603/1‑150 (MQ=255)
                                                         aaaGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATg                                                                                    <  1:206513/151‑1 (MQ=255)
                                                          aaGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATgg                                                                                   >  1:6494/1‑151 (MQ=255)
                                                           aGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGt                                                                                  <  2:312088/151‑1 (MQ=255)
                                                                     cAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAAc                                                                         >  1:395254/1‑150 (MQ=255)
                                                                     cAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACa                                                                        <  2:349871/151‑1 (MQ=255)
                                                                           aaggATTAATGCCTGAAGAACGCGAAAGAGAACGTTGAAAGAGGCTTTACGGTTAACGACTTTAGCTTCAACAGCAAAGCACAACACGCCGGTATGGCCTTCGTCAGTCTGTAACAGTGGGAAGAGCGTATTGGTGACGAAAACAGTGc                                                                    >  2:101562/3‑149 (MQ=255)
                                                                             ggATTGATATCTGAAGAACGAGAAAGCGAACATTGAAAGTGTCTTCACGGTTACCTGCTTTAGCTTCAGCAGCCAGGCACAAAACGACGGTATGGCCTTCGTCAGTCAGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGCaa                                                                <  2:475802/151‑1 (MQ=255)
                                                                               aTTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGc                                                              <  1:263941/151‑1 (MQ=255)
                                                                                 tACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCg                                                             >  2:73500/1‑150 (MQ=255)
                                                                                 tACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCg                                                             <  1:73522/150‑1 (MQ=255)
                                                                                  aCTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGt                                                           <  2:558454/151‑1 (MQ=255)
                                                                                  aCTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGt                                                           >  1:898020/1‑151 (MQ=255)
                                                                                         gaagaaCGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCa                                                     <  1:450986/150‑1 (MQ=255)
                                                                                               cGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGcc                                              >  1:714691/1‑151 (MQ=255)
                                                                                                  gaAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCaa                                            >  1:169656/1‑150 (MQ=255)
                                                                                                      gCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATgg                                       >  2:854762/1‑151 (MQ=255)
                                                                                                        gAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGa                                      >  1:770918/1‑150 (MQ=255)
                                                                                                         aaCGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAAt                                    >  2:769529/1‑151 (MQ=255)
                                                                                                          aCGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAAtt                                   <  1:379990/151‑1 (MQ=255)
                                                                                                            gTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTgg                                 <  1:489471/151‑1 (MQ=255)
                                                                                                            gTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGAGGTAATCCATCGTGCCAAAATGGAATTgg                                 >  1:583587/1‑151 (MQ=255)
                                                                                                             ttGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTggg                                >  1:490603/1‑151 (MQ=255)
                                                                                                               gAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGc                               <  1:905650/150‑1 (MQ=255)
                                                                                                                  aGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGa                           <  1:882643/151‑1 (MQ=255)
                                                                                                                      tCTTTACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCcg                       >  2:509709/1‑151 (MQ=255)
                                                                                                                         ttACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCcgcg                     <  1:820473/150‑1 (MQ=255)
                                                                                                                         ttACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCcgcg                     >  2:747898/1‑150 (MQ=255)
                                                                                                                         ttACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCcgc                      <  2:897947/149‑1 (MQ=255)
                                                                                                                         ttACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCcgc                      <  1:178653/149‑1 (MQ=255)
                                                                                                                          tACGGTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGAc                   >  1:623300/1‑151 (MQ=255)
                                                                                                                             ggTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGt                >  1:315122/1‑151 (MQ=255)
                                                                                                                              gTTAACGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTAGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGtt               >  1:599176/1‑151 (MQ=255)
                                                                                                                               ttATCGGCTTTAGCTTCAGAAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGATGACAACAGTGCGGAAGCGGTAATCCATCGAGCCAAATTGGAATTGGGCAAGCTCAGCGACGGgtt              >  2:151890/1‑151 (MQ=255)
                                                                                                                                 aaCGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGTTTTg            <  1:544746/151‑1 (MQ=255)
                                                                                                                                  aCGGCTTTAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGTTTTGt           <  2:626337/151‑1 (MQ=255)
                                                                                                                                       tttAGCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGTTTTGTcattc      >  1:249482/1‑151 (MQ=255)
                                                                                                                                           gCTTCAGCAGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGTTTTGTcattccatt  <  1:777337/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                              
GGTGTCTTTCTGACCATGATTCAGTTACCCGCTGGCGCGACGCAAGAGCGGACGCAAAAAGTGTTGGATCAAGTTACGGATTACTATCTGAAGAACGAGAAAGCGAACGTTGAAAGTGTCTTTACGGTTAACGGCTTTAGCTTCAGCGGCCAGGCACAAAACGCCGGTATGGCCTTCGTCAGTCTGAAACCGTGGGAAGAGCGTAATGGTGACGAAAACAGTGCGGAAGCGGTAATCCATCGTGCCAAAATGGAATTGGGCAAGATCCGCGACGGTTTTGTCATTCCATT  >  NC_000913/3416737‑3417026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A