Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F50 I3 R1 12 64.6 2041532 97.6% 1992535 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 962,056 G→T G21V (GGT→GTT)  rpsA → 30S ribosomal subunit protein S1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913962,0560GT100.0% 261.0 / NA 74G21V (GGT→GTT) rpsA30S ribosomal subunit protein S1
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (45/29);  total (45/29)

GCAATGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTGACG  >  NC_000913/961911‑962202
                                                                                                                                                 |                                                                                                                                                  
gCAATGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCt                                                                                                                                                <  2:738263/150‑1 (MQ=255)
  aaTGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTAt                                                                                                                                              >  1:523655/1‑150 (MQ=255)
  aaTGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTGGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTAtc                                                                                                                                             <  1:619865/151‑1 (MQ=255)
   aTGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTAtcg                                                                                                                                            >  1:865136/1‑151 (MQ=255)
      gAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTAtcgttc                                                                                                                                         <  1:657410/151‑1 (MQ=255)
        aTGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTAtcgttcgt                                                                                                                                       <  2:894259/151‑1 (MQ=255)
        aTGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGAGTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTAtcggtcg                                                                                                                                        >  2:413653/1‑150 (MQ=255)
         tGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTg                                                                                                                                      >  2:692696/1‑151 (MQ=255)
           aCAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGc                                                                                                                                    >  1:1004509/1‑151 (MQ=255)
            cAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCg                                                                                                                                   >  1:764339/1‑151 (MQ=255)
             aGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCgt                                                                                                                                  <  2:229387/151‑1 (MQ=255)
             aGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCgt                                                                                                                                  >  2:13132/1‑151 (MQ=255)
                gggTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCgttgt                                                                                                                               >  2:768678/1‑151 (MQ=255)
                 ggTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCgttgtt                                                                                                                              <  2:653645/151‑1 (MQ=255)
                  gTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCAGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTGTAAGAGTCCTTAAAAGAAATCGAAACCCGCCCTGTTTCTATCGTTCGTGGCgttgtt                                                                                                                              <  2:614461/150‑1 (MQ=255)
                   tATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCgttgttgt                                                                                                                            >  1:777745/1‑151 (MQ=255)
                    aTGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCgttgttgtt                                                                                                                           >  1:13331/1‑151 (MQ=255)
                           acaacCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCg                                                                                                                    <  1:114715/151‑1 (MQ=255)
                            caacCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCg                                                                                                                    >  2:428732/1‑150 (MQ=255)
                            caacCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGa                                                                                                                   <  2:207751/151‑1 (MQ=255)
                             aacCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGAc                                                                                                                  >  1:454805/1‑151 (MQ=255)
                              acCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACa                                                                                                                 <  2:802219/151‑1 (MQ=255)
                                 ccATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAg                                                                                                              <  2:856078/151‑1 (MQ=255)
                                  cATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGa                                                                                                             <  2:910806/151‑1 (MQ=255)
                                   aTCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGAc                                                                                                            >  2:881717/1‑151 (MQ=255)
                                        gtaTGGAGCCAGCTGCACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACgtagt                                                                                                       >  2:278167/3‑151 (MQ=255)
                                        gCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACgtagt                                                                                                       >  1:470035/1‑151 (MQ=255)
                                          aTGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTAc                                                                                                     >  2:337625/1‑151 (MQ=255)
                                          aTGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTAc                                                                                                     >  2:461700/1‑151 (MQ=255)
                                          aTGGAACCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTAc                                                                                                     >  2:609801/1‑151 (MQ=255)
                                            ggAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACt                                                                                                    <  1:228712/150‑1 (MQ=255)
                                             gAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTg                                                                                                   >  2:109664/1‑150 (MQ=255)
                                               gCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAACCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGtt                                                                                                <  2:886270/151‑1 (MQ=255)
                                                  aGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGAc                                                                                             >  1:820277/1‑151 (MQ=255)
                                                      ggACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTg                                                                                         <  1:27116/151‑1 (MQ=255)
                                                             aaaTATAACCCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGaa                                                                                  <  1:497393/151‑1 (MQ=255)
                                                              aaTATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGaa                                                                                  >  2:654623/1‑150 (MQ=255)
                                                               atatAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGaaa                                                                                 <  1:348244/150‑1 (MQ=255)
                                                               atatAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGaaa                                                                                 >  2:348194/1‑150 (MQ=255)
                                                                  taAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTg                                                                             >  1:972886/1‑151 (MQ=255)
                                                                   aaaCCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTg                                                                             >  2:102659/1‑150 (MQ=255)
                                                                            gATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCAt                                                                   >  2:380765/1‑151 (MQ=255)
                                                                                aaaCATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAACGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATccc                                                                >  2:756949/1‑150 (MQ=255)
                                                                                 aaCATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCgg                                                              >  1:166648/1‑151 (MQ=255)
                                                                                  aCATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGc                                                             <  1:868373/151‑1 (MQ=255)
                                                                                  aCATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGc                                                             >  2:328919/1‑151 (MQ=255)
                                                                                   cATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCgg                                                              >  1:358438/1‑149 (MQ=255)
                                                                                      gACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAg                                                         <  1:958445/151‑1 (MQ=255)
                                                                                          gAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGt                                                     >  2:212846/1‑151 (MQ=255)
                                                                                                tttGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTc                                                   <  2:894157/147‑1 (MQ=255)
                                                                                                tttGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCaaa                                                >  1:180275/1‑150 (MQ=255)
                                                                                                 ttGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGGAGTACTGGTTGACGCTGGTCTGACATCTGACTCCGCCATCCCGGCTGAGCAGTTCaa                                                 >  2:821467/1‑148 (MQ=255)
                                                                                                  tGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCaaaa                                               >  2:207386/1‑149 (MQ=255)
                                                                                                   gCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAAc                                             <  1:212892/150‑1 (MQ=255)
                                                                                                       aaCTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGccc                                         >  2:347462/1‑150 (MQ=255)
                                                                                                         ctctTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGCTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGTCAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCACAAACGCCCa                                        >  2:921682/1‑149 (MQ=255)
                                                                                                           ctTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAgg                                      <  2:214204/149‑1 (MQ=255)
                                                                                                            tttGAATAGTCCTTAAAATAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTTTCGACAAATACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAAGCCGCCATCCCGTCTGAGCTGTTCAAAAACGCCCAGGGCg                                   >  2:904769/1‑151 (MQ=255)
                                                                                                              tGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCg                                   >  1:392350/1‑149 (MQ=255)
                                                                                                              tGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCg                                   >  2:129255/1‑149 (MQ=255)
                                                                                                                 agagTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTg                              <  1:270253/151‑1 (MQ=255)
                                                                                                                   agTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAGAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTgg                             >  2:247412/1‑150 (MQ=255)
                                                                                                                    gTCCTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGaa                           <  1:697218/151‑1 (MQ=255)
                                                                                                                      ccTTAAAAGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAAt                         >  1:371466/1‑151 (MQ=255)
                                                                                                                            aaGAAATCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCaggt                   >  2:963111/1‑151 (MQ=255)
                                                                                                                                aaTCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGTGAGCTGGAAATCCaggtaggt               <  2:865036/151‑1 (MQ=255)
                                                                                                                                aaTCGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCaggtaggt               <  2:58385/151‑1 (MQ=255)
                                                                                                                                   cGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGAc            <  2:200119/151‑1 (MQ=255)
                                                                                                                                   cGAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGAc            >  1:57580/1‑151 (MQ=255)
                                                                                                                                    gAAACCCGCCCGGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACg           >  2:888830/1‑151 (MQ=255)
                                                                                                                                          cgcccgGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTg     <  2:199406/151‑1 (MQ=255)
                                                                                                                                          cgcccgGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTg     >  1:612841/1‑151 (MQ=255)
                                                                                                                                            cccgGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTGAc   >  2:474393/1‑151 (MQ=255)
                                                                                                                                             ccgGTTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTGACg  <  1:576922/151‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
GCAATGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTTGTTGTTGCTATCGACAAAGACGTAGTACTGGTTGACGCTGGTCTGAAATCTGAGTCCGCCATCCCGGCTGAGCAGTTCAAAAACGCCCAGGGCGAGCTGGAAATCCAGGTAGGTGACGAAGTTGACG  >  NC_000913/961911‑962202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A