Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A3 F50 I1 R1
|
300 |
54.7 |
1718999 |
98.4% |
1691495 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
1,002,538 |
A→G |
V244V (GTA→GTG) |
elfG → |
putative fimbrial‑like adhesin protein |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 1,002,538 | 0 | A | G | 98.0%
| 167.3
/ ‑6.8
| 50 | V244V (GTA→GTG) | elfG | putative fimbrial‑like adhesin protein |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (29/20); minor base T (1/0); total (30/20) |
Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACGACTACAGGTACACCGGTTTTAGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTAGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGACGTCACGTC > NC_000913/1002404‑1002683
|
aCGACTACAGGTACACCGGTTTTAGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTg < 2:711864/151‑1 (MQ=255)
cacCGGTTTTAGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGc > 2:744973/1‑151 (MQ=255)
cacCGGTTTTAGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGc < 1:437365/151‑1 (MQ=255)
acCGGTTTTAGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGc > 2:656834/1‑150 (MQ=255)
tAGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTg < 2:566569/150‑1 (MQ=255)
aatgtATTACCTGTCTGGTACGATCAATTCAATTGGGTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGGTGATTTAGTTGATGTCTTAGCTGCCAATTTTCGTGTTGTTGGGCATAAAACTCTTGGGGCCAGAACGGCAGAACTTg > 1:830693/3‑149 (MQ=255)
aGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGc < 2:440833/150‑1 (MQ=255)
gtATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAAt < 2:488039/150‑1 (MQ=255)
gtATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAAt < 1:701904/150‑1 (MQ=255)
aTTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTcc > 1:184508/1‑151 (MQ=255)
tACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTcc > 2:615967/1‑149 (MQ=255)
aCCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGt > 2:57934/1‑151 (MQ=255)
aCCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGt > 2:207545/1‑151 (MQ=255)
ccTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTc > 1:795120/1‑151 (MQ=255)
cTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTc > 2:24583/1‑150 (MQ=255)
tGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTc > 1:161755/1‑149 (MQ=255)
gTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAgg > 1:726772/1‑151 (MQ=255)
gTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAgg > 2:727481/1‑151 (MQ=255)
gTACGGACAATCCGCATGGCGCAGGGTCCGTCATTGCCGGAGAGACCCTTGAAGATGATTTAGGCGATGTCTTCGCTGACAGTTTCCGTGTTGTGGGGCATAAACCTGTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGgtgga > 1:359627/1‑148 (MQ=255)
gATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACg > 2:355624/1‑151 (MQ=255)
aTCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACgg > 1:479474/1‑151 (MQ=255)
aaTTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGaa < 2:76252/151‑1 (MQ=255)
aaTTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGa > 2:397600/1‑150 (MQ=255)
ccGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGt < 2:425745/151‑1 (MQ=255)
cGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTc < 2:295850/151‑1 (MQ=255)
gTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTc > 2:393225/1‑150 (MQ=255)
tGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCt > 2:181335/1‑150 (MQ=255)
gCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTg < 1:25923/150‑1 (MQ=255)
ccGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAg < 2:225737/151‑1 (MQ=255)
agaCAATGGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGAGTAGTTAATGTCAACCTGAGTCTGAc < 1:314096/151‑1 (MQ=255)
cAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACgg > 2:185534/1‑150 (MQ=255)
cAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGc < 1:243744/151‑1 (MQ=255)
aaGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACca > 1:478112/1‑150 (MQ=255)
aaGTTGATTTAGGTGATGTCTTCGCTGCCAAGTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACcac < 1:9889/151‑1 (MQ=255)
aGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACcaca < 2:317530/151‑1 (MQ=255)
aTTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGAccc > 2:821449/1‑151 (MQ=255)
ttAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGAcccc > 2:231882/1‑150 (MQ=255)
tAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGAcccc > 1:345161/1‑149 (MQ=255)
ggTGATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCt > 2:9139/1‑151 (MQ=255)
gATGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGCCTGACGGCAACCACAGACCCCAGCTATc > 2:608392/1‑151 (MQ=255)
aTGTCTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATcc < 2:482443/151‑1 (MQ=255)
cTTCGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATcccc > 1:504409/1‑149 (MQ=255)
cGCTGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCg < 1:49426/151‑1 (MQ=255)
tGCCAATTTCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGAtt > 2:277775/1‑151 (MQ=255)
ttCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGacgt > 2:258443/1‑151 (MQ=255)
tCCGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGacgt < 2:637855/150‑1 (MQ=255)
ccGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGacgtc < 1:370479/150‑1 (MQ=255)
ccGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGacgtc < 1:160600/150‑1 (MQ=255)
cGTGTTGTGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGacgtcac > 1:196109/1‑151 (MQ=255)
gttgtGGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGacgtcacgtc > 2:456118/1‑151 (MQ=255)
|
ACGACTACAGGTACACCGGTTTTAGTGTATTACCTGTCTGGTACGATCAATTCACTTGGCTCATGTTCCGTCAATGCCGGAGAGACAATTGAAGTTGATTTAGGTGATGTCTTCGCTGCCAATTTCCGTGTTGTAGGGCATAAACCTCTTGGGGCCAGAACGGCAGAACTTGCAATTCCAGTCAGGTGTAACACGGGAAACGCGGGATTAGTTAATGTCAACCTGAGTCTGACGGCAACCACAGACCCCAGCTATCCCCAGGCGATTAAGACGTCACGTC > NC_000913/1002404‑1002683
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A