Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A3 F50 I1 R1
|
300 |
54.7 |
1718999 |
98.4% |
1691495 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
1,265,331 |
A→G |
D107G (GAC→GGC) |
prfA → |
peptide chain release factor RF‑1 |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 1,265,331 | 0 | A | G | 98.2%
| 173.0
/ NA
| 55 | D107G (GAC→GGC) | prfA | peptide chain release factor RF‑1 |
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (29/25); total (30/25) |
Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
CAGGAAGATATCGAAACCGCACAGATGATGCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGACGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGCGAGGGTG > NC_000913/1265186‑1265474
|
cAGGAAGATATCGAAACCGCACAGATGATGCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAAc > 2:544/1‑151 (MQ=255)
cGCACAGATGATGCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGa > 2:681249/1‑150 (MQ=255)
aGATGATGCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTcc > 2:614082/1‑150 (MQ=255)
aGATGATGCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCg > 2:741622/1‑151 (MQ=255)
aGATGATGCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCg > 1:585869/1‑151 (MQ=255)
tgatgCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGc > 2:362142/1‑151 (MQ=255)
atgCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCg > 2:682507/1‑151 (MQ=255)
gCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCgg > 1:707123/1‑150 (MQ=255)
cTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGa > 2:837046/1‑150 (MQ=255)
cGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGaa < 2:424658/149‑1 (MQ=255)
cGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAAcc > 2:117258/1‑151 (MQ=255)
tgatCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACcggc > 1:153761/1‑151 (MQ=255)
atCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACcggcgg < 1:725373/151‑1 (MQ=255)
cTGCAATGCGAGAGATGACGCAGGATGAACTGCGAGAGCCTAAAGAAAACAGCGAGCAACCGGAACAGCAATTACAGGTTCTGCTACTGCCAAAAGATACTGATGACCAACGTAACGCCTTCCTCGAAGTCCGAGCCGGCACCggcggc > 1:49666/1‑149 (MQ=255)
gCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTGGAAGTCCGAGCCGGAACCGGCGGCGACGAAgcg > 1:440320/1‑151 (MQ=255)
cGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAgcgg < 1:184131/151‑1 (MQ=255)
cAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCgg < 1:486775/151‑1 (MQ=255)
gcgAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCg > 2:10211/1‑151 (MQ=255)
gAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGt > 2:3151/1‑150 (MQ=255)
aaGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTAt < 2:361098/151‑1 (MQ=255)
cTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGt > 2:740319/1‑150 (MQ=255)
aaaGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTAc > 2:649036/1‑150 (MQ=255)
aaaGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACa < 1:541596/151‑1 (MQ=255)
aGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGc < 1:217599/130‑1 (MQ=255)
aGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGc > 2:217623/1‑130 (MQ=255)
aGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGc > 2:301352/1‑151 (MQ=255)
aaaaGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGtt > 1:778139/1‑151 (MQ=255)
aaaGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGtt > 1:111454/1‑150 (MQ=255)
aaaGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTa < 2:686064/151‑1 (MQ=255)
aaGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTAt < 2:122940/151‑1 (MQ=255)
aGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATg > 2:249076/1‑151 (MQ=255)
gAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCg > 2:283580/1‑151 (MQ=255)
aaCTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGc > 2:14857/1‑151 (MQ=255)
aaCAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCccgccg < 2:398784/151‑1 (MQ=255)
aaTTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTACCGCCTCCCTCGAAGTCCGAGCCGGAACGGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTCCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTgg < 2:131871/149‑1 (MQ=255)
aaTTACAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCTTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCg < 2:843091/151‑1 (MQ=255)
aCAGGTTCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCggg > 1:285683/1‑149 (MQ=255)
cAGGTTATGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCgggggg > 1:642269/1‑148 (MQ=255)
gtttCTGTTACTGCCAAAAGATCCTGATGGCGAACGTATCGCCTCCCTCGAAGCCCGCGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGaa < 1:614579/149‑1 (MQ=255)
ttCTGTTACTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGaaa < 2:23224/150‑1 (MQ=255)
cTGTTCCTGCCAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAAt < 2:277673/149‑1 (MQ=255)
ttACTGCAAAAAGATCCTGAGGGCGAACGTACCGCCTTCCCCGAAGTCCGAGCCGAAACGGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCAt < 1:96440/149‑1 (MQ=255)
ttACTGCAAAAAGATCCGGAGGGCGAACGTAACCCTTTCCTCGAAGCCGGGGCCGGAACCGGGGGCGACGAGGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCAt < 1:490698/149‑1 (MQ=255)
actccaaaaaGATCCGGATGGCGAACGTACCGCCTTCCGCGAGGCCCGGGCCGGAACCGGCGGCGACGAAGCGGCGTTGTCCGCGGGCGATCTGTCCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAg < 2:11942/144‑1 (MQ=255)
ccAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGcc > 2:850190/1‑150 (MQ=255)
caaaaaGACCCGGATGGGGAACGTAACGCCTTCCTGGAAGTCGGAGCCGGAACCGGCGGCGACGAAGGGGCGCTGTTCGGGGGGGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAgcgc < 1:648994/147‑1 (MQ=255)
cAAAAGATCCTGATGGCGAACGTAACGCCTTCCTCGAGGTCCGAGCCGGACCCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCa < 2:78850/150‑1 (MQ=255)
aaaaGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGc < 2:201379/151‑1 (MQ=255)
aGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGCg > 2:443733/1‑149 (MQ=255)
aGATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGCGAg < 2:546232/151‑1 (MQ=255)
gATCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGGAGAAATCATGAGCGCCAGCGAgg > 1:368742/1‑151 (MQ=255)
gATCCTGAGGGCGAACGTAACGCCTTCCTGGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTCCGCGGGCGATCTGTTCCGTAGGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGCGAgg < 2:497514/151‑1 (MQ=255)
aTCCTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGGGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGCGAggg < 2:34921/151‑1 (MQ=255)
ccTGAGGGCGAACGTACCGCCTTCCTCGAAGTCCGAGCCGGACCCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGCGAGGGTg < 1:14836/151‑1 (MQ=255)
cTGATGGCGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGGAGAAATCATGAGCGCCAGCGAGGGTg > 1:120258/1‑150 (MQ=255)
|
CAGGAAGATATCGAAACCGCACAGATGATGCTCGATGATCCTGAAATGCGTGAGATGGCGCAGGATGAACTGCGCGAAGCTAAAGAAAAAAGCGAGCAACTGGAACAGCAATTACAGGTTCTGTTACTGCCAAAAGATCCTGATGACGAACGTAACGCCTTCCTCGAAGTCCGAGCCGGAACCGGCGGCGACGAAGCGGCGCTGTTCGCGGGCGATCTGTTCCGTATGTACAGCCGTTATGCCGAAGCCCGCCGCTGGCGGGTAGAAATCATGAGCGCCAGCGAGGGTG > NC_000913/1265186‑1265474
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A