Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
300 |
54.7 |
1718999 |
98.4% |
1691495 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,286,334 |
T→C |
L22P (CTT→CCT) |
agaI → |
galactosamine‑6‑phosphate isomerase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,286,334 | 0 | T | C | 100.0%
| 195.7
/ NA
| 56 | L22P (CTT→CCT) | agaI | galactosamine‑6‑phosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (33/23); total (33/23) |
GTGAAAAAAGCGCATCCGGTGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCTTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTACTGACGTATCATTATCTGGTAGAAAAAATCC > NC_000913/3286189‑3286480
|
gTGAAAAAAGCGCATCCGGTGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGc < 2:624516/151‑1 (MQ=255)
gAAAAAAGCGCATCCGGTGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCaa < 1:441248/151‑1 (MQ=255)
aaaaaaGCGCATCCGGTGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCa > 2:539503/1‑149 (MQ=255)
cATCCGGTGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACt > 1:854665/1‑151 (MQ=255)
cGGTGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATAc > 2:552110/1‑151 (MQ=255)
tGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGc > 2:6333/1‑151 (MQ=255)
aaTCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGt < 1:687947/151‑1 (MQ=255)
cGGCGTGACTTTTGTGCTCTCTATTGTTTTTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGa < 1:478990/150‑1 (MQ=255)
cGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGaa < 1:121984/151‑1 (MQ=255)
gCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACg > 2:505300/1‑151 (MQ=255)
gTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTg > 2:5638/1‑151 (MQ=255)
tGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGc > 1:368124/1‑151 (MQ=255)
aCTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCACACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGcc > 2:800539/1‑150 (MQ=255)
tgtgCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGa > 1:249388/1‑150 (MQ=255)
tctctATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAAtattt > 2:512334/1‑151 (MQ=255)
ctctATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAAtattt > 1:750346/1‑150 (MQ=255)
ctctATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAAtatt < 1:657834/149‑1 (MQ=255)
ctctATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAAtatt < 2:161754/149‑1 (MQ=255)
tctATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAAtatttat > 2:691861/1‑151 (MQ=255)
ctATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAAtattta < 2:425099/149‑1 (MQ=255)
gtttgttCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCg > 2:621984/1‑151 (MQ=255)
gttCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGa < 2:34179/150‑1 (MQ=255)
tCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATcc > 1:284005/1‑151 (MQ=255)
cGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGt > 1:653614/1‑151 (MQ=255)
gCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTa < 2:378723/151‑1 (MQ=255)
aTTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGc > 1:193355/1‑151 (MQ=255)
aTTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGc > 2:627343/1‑151 (MQ=255)
ggCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAAc > 2:698677/1‑151 (MQ=255)
ggCATTTTGTAAATGGAACGAGGCACTGCGTCTGGCGGGGCCTCTTTACTTAAGGAATTTCATACTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAGTATTTATTGGCCGTGATCCGTAGCAAAc > 1:327355/1‑151 (MQ=255)
tGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATg < 2:566891/150‑1 (MQ=255)
tGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATg < 1:642783/150‑1 (MQ=255)
aTGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGa < 1:653649/151‑1 (MQ=255)
tGGAACGAGGTACTGCGTCTGGCGGTGCCTCTATACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTTAAAACTATACGGCGTTAAGTGAACGTCCCAGCGAAGATTTATTGGCCCTGGTCCGGAGCAAAGCGCATGCCGTGAt > 1:284304/1‑151 (MQ=255)
ggAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGAt < 1:172106/150‑1 (MQ=255)
gAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCt > 2:465404/1‑151 (MQ=255)
gAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTAATCCTGGGAAAACCCCTAAGCAGGTTGAAAACTATACGGCGTAAAGGGAACGTGCAAGCGAATATTTATGGGCCGTGATCCGAAGCAAACCGAATGCCGGGATTTGc > 1:150121/1‑149 (MQ=255)
aGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTg < 2:732379/151‑1 (MQ=255)
aGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTg > 2:429386/1‑151 (MQ=255)
cTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGAc > 2:15610/1‑151 (MQ=255)
tGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGAcc > 1:558455/1‑151 (MQ=255)
tGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGAcc > 2:386496/1‑151 (MQ=255)
cTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAg > 2:444226/1‑150 (MQ=255)
cTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGc > 2:436392/1‑151 (MQ=255)
ggtggtGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCCGCGAATATTTATTGGCCGGGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGTCCGGAGc < 1:835581/149‑1 (MQ=255)
ggtgCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGc < 2:734873/151‑1 (MQ=255)
gCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCAt < 2:441720/151‑1 (MQ=255)
gCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCAt > 2:565393/1‑151 (MQ=255)
ccTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCAtt > 2:469638/1‑151 (MQ=255)
tctTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTAc > 1:837270/1‑151 (MQ=255)
ctTTACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTACt > 2:205627/1‑151 (MQ=255)
ttACTTAAGGAATTTCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTGGCCTGGCGACCGGAGCCACGCCATTAc < 2:104263/148‑1 (MQ=255)
ggAAATTCGTCCTGTGCATGCACCTCAGCAAGTTGAAAACTATACGGCTTTAAGGGAGCGTGCCAGCGAATATTCATTGGCCGTGAGCCGTTGCAAACTGAATGCCGAGATTTGCCTATCGCCCGGCGCCGCGCCATAACTGACGtctctt < 1:298753/151‑3 (MQ=255)
tttCATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTACTGACGTATCATTATc > 1:446528/1‑151 (MQ=255)
cATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTACTGACGTATCATTATCTg < 2:519222/150‑1 (MQ=255)
cATCCTGTGCAAACCCCTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTACTGACGTATCATTATCTg < 2:165532/150‑1 (MQ=255)
aCCCCTCAGCAAGTGGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTACTGACGTATCATTATCTGGTAGAAAAAATcc < 2:505363/151‑1 (MQ=255)
|
GTGAAAAAAGCGCATCCGGTGCTGTTAATCGGCGTGACTTTTGTGCTCTCTATTGTTTGTTCCGCATTCGGCATTTTGTAAATGGAACGAGGCACTGCGTCTGGTGGTGCCTCTTTACTTAAGGAATTTCATCCTGTGCAAACCCTTCAGCAAGTTGAAAACTATACGGCGTTAAGTGAACGTGCCAGCGAATATTTATTGGCCGTGATCCGTAGCAAACCGAATGCCGTGATTTGCCTGGCGACCGGAGCCACGCCATTACTGACGTATCATTATCTGGTAGAAAAAATCC > NC_000913/3286189‑3286480
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A